NO25G00130.1, NO25G00130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00130.1
Unique NameNO25G00130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1164
Alignment locationchr25:21847..24693 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:21847..24693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00130.1 vs.
Match: YP_002296260.1 (putative membrane protein [Emiliania huxleyi virus 86])

HSP 1 Score: 127.1 bits (318), Expect = 1.200e-25
Identity = 76/222 (34.23%), Postives = 120/222 (54.05%), Query Frame = 0 
Query:  154 MHRFFSHRAWQCSRPTAFVLGCMATLIGNRGPLWWSSKHMRHHKYCENEGPYPHNDPHSHFRYGWWYGYIGWTMAPTEKRVDWDFVLPCFKTWEMALVEALTWIVPVGEAGL-YWYLVNMHFAMWHVYSSTLWIYITLCINSLTHFDGTPEPEPVNGRHKCKATNKPPLIMRYTLDFMGEMSHADHHRYPRKALRPSYVGV---DVMYWAFIRPLEALGVFW 372
            +HR+FSH A++ SR    VLG  +TL    GP+WW+SKH RHHK+C+N    PH DPHS  +  ++Y ++GWT+   E+ +D +FV       E+ L++   +++P     + Y Y+ +    +  V       +ITL  N   H   TP    + G  KC A +      R+  D +GE  HA HH +P + +RPS +G+   D+ Y+ +++PL   G+ W
Sbjct:   26 LHRYFSHSAYKTSRLFQCVLGLFSTLAYQGGPIWWASKHRRHHKHCDN----PH-DPHSVVQTNFFYSFVGWTIMKKEQSIDTEFVQKFMTFPELVLIDRFWYMIPWTIWTISYMYIGSYATCVLFVAPMLGCRFITLLFNVEYH---TPNRHSIPG--KCLALD----TARFLGDCVGESGHARHHIHPSELVRPS-LGIPYFDIPYYIYLKPLMYTGLIW 232
The following BLAST results are available for this feature:
BLAST of NO25G00130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
YP_002296260.11.200e-2534.23putative membrane protein [Emiliania huxleyi virus... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00130NO25G00130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00130.1NO25G00130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00130.1.cds1NO25G00130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds2NO25G00130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds3NO25G00130.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds4NO25G00130.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds5NO25G00130.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds6NO25G00130.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds7NO25G00130.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds8NO25G00130.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds9NO25G00130.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00130.1.cds10NO25G00130.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00130.1 ID=NO25G00130.1|Name=NO25G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ATGGTCCGACGCGACGCTACCGCCGGGCGGGTCTCCCCCACGGCGAGCCC
CAAGAGCTACAGTCGGAAGGGGAAAAAGTCCATGGCCTCCGCCGCCGGCT
CTCCCACCTCCACAGCCCCTTCCTCCCCTACTTCCTCCACCTCTTCCATC
TCCTCCTCCTCCTCCTCCTCCTCCTCCATCGTCGACAGCACCAGCACCGA
GAGCAACACACCTAAAGGCGTCATCAACACGGACGAGCGGGCCACCATGG
AGACCCAGGGGCAAACACCAACGCCTGCTTACATCCTCAAGTACGCGCCC
TACGTCGATAACTTCAATTGGCTCATGGTCTTCCCTCTCTACGCCTTGGC
GCCCGCACTCTTCCTCCTTCAGTGTTATTACAACTACTGGCTCCCCTGGT
ATGCCATGCTCCTCCTTCCCTTCTACGGATACGCGCGCAACATCGTCTGC
TTCGGCCTAATGCACCGCTTTTTCTCCCACCGTGCATGGCAATGCTCAAG
GCCCACCGCGTTCGTGCTCGGGTGCATGGCCACATTGATCGGTAACAGAG
GCCCCCTCTGGTGGTCTTCCAAGCACATGCGTCATCACAAGTACTGCGAG
AACGAAGGGCCGTATCCCCACAACGATCCCCACTCCCATTTCCGCTATGG
ATGGTGGTACGGCTACATTGGCTGGACCATGGCCCCCACTGAAAAACGGG
TCGATTGGGATTTCGTATTGCCCTGCTTTAAGACTTGGGAGATGGCTCTT
GTGGAGGCGCTCACGTGGATCGTGCCCGTAGGCGAGGCTGGCCTCTATTG
GTACCTGGTGAACATGCACTTCGCCATGTGGCACGTGTACTCCTCCACCC
TTTGGATCTACATCACCCTCTGCATTAACAGCTTGACCCACTTCGATGGC
ACGCCCGAACCCGAGCCTGTCAATGGCCGCCATAAGTGCAAGGCCACCAA
CAAGCCCCCTCTAATCATGAGGTATACGTTGGACTTTATGGGAGAAATGA
GCCACGCCGATCACCATCGCTACCCACGCAAGGCTCTCCGTCCCTCCTAC
GTAGGCGTAGATGTGATGTATTGGGCCTTCATTCGGCCGTTGGAGGCTCT
AGGCGTTTTTTGGGATGTGAAAATTGGTGGGGGGATGAAAGCCGCTGAGC
TCCATTCGCATTAA
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protein sequence of NO25G00130.1

>NO25G00130.1-protein ID=NO25G00130.1-protein|Name=NO25G00130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=388bp
MVRRDATAGRVSPTASPKSYSRKGKKSMASAAGSPTSTAPSSPTSSTSSI
SSSSSSSSSIVDSTSTESNTPKGVINTDERATMETQGQTPTPAYILKYAP
YVDNFNWLMVFPLYALAPALFLLQCYYNYWLPWYAMLLLPFYGYARNIVC
FGLMHRFFSHRAWQCSRPTAFVLGCMATLIGNRGPLWWSSKHMRHHKYCE
NEGPYPHNDPHSHFRYGWWYGYIGWTMAPTEKRVDWDFVLPCFKTWEMAL
VEALTWIVPVGEAGLYWYLVNMHFAMWHVYSSTLWIYITLCINSLTHFDG
TPEPEPVNGRHKCKATNKPPLIMRYTLDFMGEMSHADHHRYPRKALRPSY
VGVDVMYWAFIRPLEALGVFWDVKIGGGMKAAELHSH*
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mRNA from alignment at chr25:21847..24693+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00130.1 ID=NO25G00130.1|Name=NO25G00130.1|organism=Nannochloropsis oceanica|type=mRNA|length=2847bp|location=Sequence derived from alignment at chr25:21847..24693+ (Nannochloropsis oceanica)
ATGGTCCGACGCGACGCTACCGCCGGGCGGGTCTCCCCCACGGCGAGCCC
CAAGAGCTACAGTCGGAAGGGGAAAAAGGTGAGAGAGGGAGAAAGAGGAG
AGTGAAAAGCATGTGGTGCTTCATGTCCGAGTCTCCGAGACAATCACCCA
GTCACACACCCATGAAGCATGCTCGAAACCATGTTGTGACGCGCGTGTAC
CTCCTTGTCAACCACGGGCTCTCCCTACGTACTTCGAACGGCATGTAAAT
GATTGTGTGTCCCCGTTCTTGCCGATCTTCTTAATCATTTACTTACTTAC
TTACCCACTATCTGGTTCATTCACTGTCCTCCTCCCTCCTTCCCTTCCTC
CCTTCCCCCTTCCCTCCAGTCCATGGCCTCCGCCGCCGGCTCTCCCACCT
CCACAGCCCCTTCCTCCCCTACTTCCTCCACCTCTTCCATCTCCTCCTCC
TCCTCCTCCTCCTCCTCCATCGTCGACAGCACCAGCACCGAGAGCAACAC
ACCTAAAGGCGTCATCAACACGGACGAGCGGGCCACCATGGAGACCCAGG
GGCAAACACCAACGCCTGTATGAAAGGGGGAAAGAGGGAGGGAGGGAGGG
CGGAAGTAAAGGAGGGTGGAATGGAAGCCTTAAGCTTCACTTCAGAAAGG
CAGTGTTAACTCTATCCCTCCCTCCCTCCCTCCCCCCCCTTCCCCCCTTC
CCTCCCTCCCTCTCTTTTCTCCTCCATTCTCATCAAGGCTTACATCCTCA
AGTACGCGCCCTACGTCGATAACTTCAATTGGCTCATGGTCTTCCCTCTC
TACGCCTTGGCGCCCGCACGTGCGTGAAGGAGGGAGGAAAGGAGGAAGGA
AAGGAGGGAGGGAGGGAAGGAGGATGTGGGTTACAATTCAAGTAAATAGA
GTGCTCTGTATTGACGTTTCTGCCTTCCTCCCTCCCTCCTTCCCTCCCCC
TCCTGCTCTGTATAGTCTTCCTCCTTCAGTGTTATTACAACTACTGGCTC
CCCTGGTATGCCATGCTCCTCCTTCCCTTCTACGGATACGCGCGCAACAT
CGTCTGCTTCGGCCTAATGCACCGCTTTTTCTCCCACCGTGCATGGCAAT
GCTCAAGGTACGGGCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTTCCTTC
CTCTCTTCCTCCCTCCTCCCCTCCTTTGTACGATCTCGCGCAGAAAGTGT
CACCTTCCCTTCCTCTCACTTCCTACCCCCTCTCTCCTTCCCCAGGCCCA
CCGCGTTCGTGCTCGGGTGCATGGCCACATTGATCGGTAACAGAGGCCCC
CTCTGGTGGTAAGGAGGGAGGGAGGTTGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGTAGGTCGAGTCGCCCTTTCCACATGTCTCTTGGCATGTGTGTA
CCTGCAGGAAACGTTCACTCAACACCCCCTCCCCCCCCCCGTAGGTCTTC
CAAGCACATGCGTCATCACAAGTACTGCGAGAACGAAGGGCCGTATCCCC
ACAACGATCCCCACTCCCATTTCCGCTATGGATGGTGGTACGGCTACATT
GTACGTATATCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCCTCCT
CATCACATCCGCCCCCTCGAGCCCGTCATTTTGACACTTATTTCTCCTAT
TCACTTCCCAACACTTCCCGTCCCTTGCCCCCCTCCTTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGACAGGGCTG
GACCATGGCCCCCACTGAAAAACGGGTCGATTGGGATTTCGTATTGCCCT
GCTTTAAGACTTGGGAGATGGCTCTTGTGGAGGCGCTCACGTGGATCGTG
CCCGTAGGCGAGGCTGGCCTCTATTGGTACCTGGTACGTCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCGTTCCAAAGCC
CGTCGTCCCATCGACATCCCAACGTATGCCCCTCCTCACTAACTCCTCAG
AAACGAATGCTTCTTTCAATCCTTCCCTCCCCCCCTCCCTCCCTCCAACC
CTCCATTCCTCTCACCCTCCCTCCCTCCCCCCTCTTGTCAGGTGAACATG
CACTTCGCCATGTGGCACGTGTACTCCTCCACCCTTTGGATCTACATCAC
CCTCTGCATTAACAGCTTGACCCACTTCGATGGCACGCCCGAACCCGAGC
CTGTCAATGGCCGCCATAAGGTACGACATGCCCCTCCCCTCCTTCCTCCC
TCCCTCCTTCCCTCCCTCCCTCCCTCTCTTCCTCCCTCCCTCCCGTCAAT
TCCATCTCTGAGACAGACTGCGACCTCTCTCCTTCCCTTCACCCTTCCCT
TTCTCTCTCCCTCCCTCCCTCGCGCAGTGCAAGGCCACCAACAAGCCCCC
TCTAATCATGAGGTATACGTTGGACTTTATGGGAGAAATGAGCCACGCCG
ATCACCATCGCTACCCACGGTAAGGATCACCTTCCCTCATCCCCTCCCTT
CCGTTCCTGTCTCTTCCATCTCTCCCTCCGTCACTCCCACTCTTCCTGCA
CTCCAGCAAGACTTTCTCTCACTCTAATACAATAGGAGACCCTTCAGATG
CTTCCCCCTCCTCACACCCCCCTCCCTCCCTCCCTTCATTCCCCCACCCT
CTCCTCACTCCTCCCTCCTTCCATTCCTCCCTTCATCCTCCCACCCTCTC
CTCACTTACAGCAAGGCTCTCCGTCCCTCCTACGTAGGCGTAGATGTGAT
GTATTGGGCCTTCATTCGGCCGTTGGAGGCTCTAGGCGTTTTTTGGGATG
TGAAAATTGGTGGGGGGATGAAAGCCGCTGAGCTCCATTCGCATTAA
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Coding sequence (CDS) from alignment at chr25:21847..24693+

>NO25G00130.1 ID=NO25G00130.1|Name=NO25G00130.1|organism=Nannochloropsis oceanica|type=CDS|length=1164bp|location=Sequence derived from alignment at chr25:21847..24693+ (Nannochloropsis oceanica)
ATGGTCCGACGCGACGCTACCGCCGGGCGGGTCTCCCCCACGGCGAGCCC
CAAGAGCTACAGTCGGAAGGGGAAAAAGTCCATGGCCTCCGCCGCCGGCT
CTCCCACCTCCACAGCCCCTTCCTCCCCTACTTCCTCCACCTCTTCCATC
TCCTCCTCCTCCTCCTCCTCCTCCTCCATCGTCGACAGCACCAGCACCGA
GAGCAACACACCTAAAGGCGTCATCAACACGGACGAGCGGGCCACCATGG
AGACCCAGGGGCAAACACCAACGCCTGCTTACATCCTCAAGTACGCGCCC
TACGTCGATAACTTCAATTGGCTCATGGTCTTCCCTCTCTACGCCTTGGC
GCCCGCACTCTTCCTCCTTCAGTGTTATTACAACTACTGGCTCCCCTGGT
ATGCCATGCTCCTCCTTCCCTTCTACGGATACGCGCGCAACATCGTCTGC
TTCGGCCTAATGCACCGCTTTTTCTCCCACCGTGCATGGCAATGCTCAAG
GCCCACCGCGTTCGTGCTCGGGTGCATGGCCACATTGATCGGTAACAGAG
GCCCCCTCTGGTGGTCTTCCAAGCACATGCGTCATCACAAGTACTGCGAG
AACGAAGGGCCGTATCCCCACAACGATCCCCACTCCCATTTCCGCTATGG
ATGGTGGTACGGCTACATTGGCTGGACCATGGCCCCCACTGAAAAACGGG
TCGATTGGGATTTCGTATTGCCCTGCTTTAAGACTTGGGAGATGGCTCTT
GTGGAGGCGCTCACGTGGATCGTGCCCGTAGGCGAGGCTGGCCTCTATTG
GTACCTGGTGAACATGCACTTCGCCATGTGGCACGTGTACTCCTCCACCC
TTTGGATCTACATCACCCTCTGCATTAACAGCTTGACCCACTTCGATGGC
ACGCCCGAACCCGAGCCTGTCAATGGCCGCCATAAGTGCAAGGCCACCAA
CAAGCCCCCTCTAATCATGAGGTATACGTTGGACTTTATGGGAGAAATGA
GCCACGCCGATCACCATCGCTACCCACGCAAGGCTCTCCGTCCCTCCTAC
GTAGGCGTAGATGTGATGTATTGGGCCTTCATTCGGCCGTTGGAGGCTCT
AGGCGTTTTTTGGGATGTGAAAATTGGTGGGGGGATGAAAGCCGCTGAGC
TCCATTCGCATTAA
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Synonyms
Publications