NO25G00120.1, NO25G00120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00120.1
Unique NameNO25G00120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr25:18985..21040 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:18985..21040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00120.1 vs.
Match: XP_016612195.1 (hypothetical protein SPPG_01591 [Spizellomyces punctatus DAOM BR117]; KND04156.1 hypothetical protein SPPG_01591 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 201.4 bits (511), Expect = 4.500e-48
Identity = 109/228 (47.81%), Postives = 144/228 (63.16%), Query Frame = 0 
Query:   72 MTTTPETPASARRPLAQYLEEKGLIAPGVARATQAASVEKPFGSAPEGPNYKKMGTPLRSVMQQHVDFFDRDGDGVITMRDTFFGFRRLGFNWAFCLWAVFVINPAFSIASYPGYFIDPFMCIYSRNIHRGKHGSDQEVYDHEGRFIPQRFEDIFAKWDQEGKGGLSLRDLWKMTQSSFEVNDFFGWFAGKFEWFTLWLLTADDKGLVTKEAVRSVYDGSLFYKMEAK 300
            ++   + PA+   P+ + L+ K +  PG  RA  A S E P GS     +         +VMQQH++FFDR  DG+I   +T+ GFR +GFN AF + AVFVI+  FS  S   +   P   IY +NIHR KHGSD   YD EGR+IPQRFE+IF K+D+ GKGGL+LR++  MT+    V DFFG FA  FEW TLWLL  D+ G+V KE +R VYDG+LFY +E++
Sbjct:   45 VSAVDKCPATKAFPVPEDLD-KYIRNPGCPRANAAPSAEHPTGSHDNKRDL--------TVMQQHIEFFDRVKDGIIWPWETYVGFRAIGFNIAFSIMAVFVIHGGFSYFSIDSWIPHPGFPIYIKNIHRCKHGSDTGTYDTEGRYIPQRFEEIFTKFDKTGKGGLTLREILTMTREIRNVMDFFGVFANLFEWVTLWLLCKDEHGVVKKEQLRRVYDGTLFYHIESE 263
The following BLAST results are available for this feature:
BLAST of NO25G00120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_016612195.14.500e-4847.81hypothetical protein SPPG_01591 [Spizellomyces pun... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00120NO25G00120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00120.1NO25G00120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00120.1.cds1NO25G00120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00120.1.cds2NO25G00120.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00120.1.cds3NO25G00120.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00120.1.cds4NO25G00120.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00120.1.cds5NO25G00120.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00120.1.cds6NO25G00120.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00120.1.cds7NO25G00120.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00120.1 ID=NO25G00120.1|Name=NO25G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1059bp
ATGACAACCATAAACAGAAGCAGCAGTTGCAGCAGCAGCAGCAGCGTCGG
CGTGGGTGGCCACATGCATGCTACCGATTCTTCCTCCCCCTCCTTTAACA
AACCCACTCTCCCCAGCCAGACGCAGCTCGCCAGCGCCAACGCGCCCATG
TCCAGCCAGCAAGAAGCATACCTCCCTGAAATCCAGTCTTATGCCCACAG
CAATCTTCCCTTCATGACCACCACGCCCGAGACTCCTGCCAGTGCGCGTC
GGCCCCTGGCACAGTACCTCGAGGAAAAGGGGTTAATTGCACCAGGGGTA
GCTCGTGCGACCCAGGCGGCATCGGTTGAAAAGCCGTTTGGATCGGCGCC
TGAAGGGCCGAATTATAAGAAGATGGGGACCCCCTTGCGTTCGGTGATGC
AGCAACACGTGGATTTCTTCGACCGTGACGGGGACGGGGTCATTACCATG
CGGGACACCTTTTTCGGGTTTCGCCGCCTGGGCTTCAATTGGGCCTTTTG
CCTGTGGGCAGTCTTCGTCATTAATCCCGCGTTTTCCATTGCCTCTTACC
CGGGCTATTTCATTGACCCCTTCATGTGCATCTACTCCCGTAACATCCAC
CGTGGCAAGCATGGAAGTGACCAGGAGGTATACGATCACGAAGGTCGCTT
CATTCCTCAGCGCTTTGAAGACATTTTTGCCAAGTGGGATCAAGAGGGAA
AGGGCGGCCTTAGCCTCCGTGACTTGTGGAAAATGACGCAGAGCTCCTTC
GAGGTGAATGATTTCTTCGGCTGGTTCGCCGGCAAGTTCGAGTGGTTTAC
CCTCTGGCTTCTCACTGCTGATGACAAGGGCCTGGTGACCAAAGAGGCCG
TGCGGAGTGTTTATGACGGAAGCTTGTTCTACAAGATGGAGGCCAAGTGG
GGGCATGGGGCGCCGGCGAGTGAGTTGGGTGAATACGCGAACATGGGAGA
AGGGTCGACGTTCAGCGCCTTGTGGGCACGGCTGAGGGGAGGACAGAAGG
GTCGAGAGAAAGCGGTGACGGAGCAGGTGACGATGGAGGGGAAGAGCAAG
CGTCAGTAA
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protein sequence of NO25G00120.1

>NO25G00120.1-protein ID=NO25G00120.1-protein|Name=NO25G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MTTINRSSSCSSSSSVGVGGHMHATDSSSPSFNKPTLPSQTQLASANAPM
SSQQEAYLPEIQSYAHSNLPFMTTTPETPASARRPLAQYLEEKGLIAPGV
ARATQAASVEKPFGSAPEGPNYKKMGTPLRSVMQQHVDFFDRDGDGVITM
RDTFFGFRRLGFNWAFCLWAVFVINPAFSIASYPGYFIDPFMCIYSRNIH
RGKHGSDQEVYDHEGRFIPQRFEDIFAKWDQEGKGGLSLRDLWKMTQSSF
EVNDFFGWFAGKFEWFTLWLLTADDKGLVTKEAVRSVYDGSLFYKMEAKW
GHGAPASELGEYANMGEGSTFSALWARLRGGQKGREKAVTEQVTMEGKSK
RQ*
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mRNA from alignment at chr25:18985..21040+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00120.1 ID=NO25G00120.1|Name=NO25G00120.1|organism=Nannochloropsis oceanica|type=mRNA|length=2056bp|location=Sequence derived from alignment at chr25:18985..21040+ (Nannochloropsis oceanica)
ATGACAACCATAAACAGAAGCAGCAGTTGCAGCAGCAGCAGCAGCGTCGG
CGTGGGTGGCCACATGCATGCTACCGATTCTTCCTCCCCCTCCTTTAACA
AACCCACTCTCCCCAGCCAGACGCAGCTCGCCAGCGCCAACGCGCCCATG
TCCAGCCAGCAAGAAGCATACCTCCCTGAAATCCAGTCTTATGCCCACAG
CAATCTTCCCTTCATGACCACCACGCCCGAGACTCCTGCCAGTGCGCGTC
GGCCCCTGGCACAGTACCTCGAGGAAAAGGGGTTAATTGCACCAGGGGTA
GCTCGTGCGACCCAGGCGGCATCGGTTGAAAAGCCGTTTGGATCGGCGCC
TGAAGGGCCGAATTATAAGAAGATGGGGACCCCCTTGCGTTCGGTGTGTG
AGAATGGGAGGGAGGATGCCGAGAGATGAAAAATAGGGGAGGGAGGGCGA
ACTTTGTGAAGAGGAAGGAAGGGAAAGAGGGAGGGAGGATACTCGTGGGA
AAAAAAGGTATTGCGAGGCCCACGGCTAAAGGAACTCTTATTCTGTTAAC
CACCAGGTGATGCAGCAACACGTGGATTTCTTCGACCGTGACGGGGACGG
GGTCATTACCATGCGGGACACCTTTTTCGGGTACGTTTTTAGGGTTAAGG
CTCGATCCTGCTCCCCCTCTTTCCCTCCTTCCTTCATTCTTCCTCTGGCT
CCTTTTGGAGCCGTCATTTTATCACCAATCGCTATCTCACTCTTCCTTTC
AACCTTTCCCTCGCTCTTTCTTCTCCACAGGTTTCGCCGCCTGGGCTTCA
ATTGGGCCTTTTGCCTGTGGGCAGGTACACTTACACCTCGTCCTCCTTCC
CTCCCTCATCTCTTTCCCCCTCCGTTGCTTTCTCCCACCGCTCATTTTTC
TTTTTTGCTACATACACCTCATCGGTGACCATATCTTAGAATTGCACCTA
CATCATCATCATTAATCGCGTTAATATCTAATCCTCTTTCTCCCCACCCT
CCTTCCCCTTCTTCCTCCCTTTATTACTTCCGATCCCCGTCTTCTCCTCT
CAGTCTTCGTCATTAATCCCGCGTTTTCCATTGCCTCTTACCCGGGCTAT
TTCATTGACCCCTTCATGTGCATCTACTCCCGTAACATCCACCGTGGCAA
GCATGGAAGTGACCAGGAGGTATACGATCACGAAGGTAGGAGGGAGGGCA
GGGAGGGGAGGAGGGGCAGGGAAGAGGGGAGGGAAGATCCGACGCTGGAA
CCTTCTCTTTTCACATTATTCTTCTTTTCTAAGGCTCTCTTCTTCTATCC
TACCCTTCCTCTATATATAGGTCGCTTCATTCCTCAGCGCTTTGAAGACA
TTTTTGCCAAGTGGGATCAAGAGGGAAAGGGCGGCCTTAGCCTCCGTGAC
TTGTGGTACAAAGGGACGAGGGGAAGGAGAGAGGGAGAGGAGGAGCAAGG
AAAAGACAAAGCCCACAAGAGAAGCGGATTTAGAGACATTGTCGAAGTTT
CGTGTTCATAGCAAACTGCTCACCTTGCGTCTTATCTTTGCTCCCTCCTT
CTACCCTTTCCCCTTCCCTCCCCTTTCCTCCCTTTTCTCCTTTAACCGTT
AGGAAAATGACGCAGAGCTCCTTCGAGGTGAATGATTTCTTCGGCTGGTT
CGCCGGCAAGTTCGAGTGGTTTACCCTCTGGCTTCTCACTGCTGATGACA
AGGGCCTGGTGACCAAAGAGGCCGTGCGGAGTGTTTATGACGGAAGCTTG
TTCTACAAGATGGAGGTAGGGGGGGAGGGGCTTTTCGGAGGGGAGGGGGG
AGGGATGGGAAGTAGAAGGATAAGAAAGTGGTGTATGACCTAATCATGTG
CCCTCTCCATTATCACTCCCTCCCTTCTTGAAATATAGGCCAAGTGGGGG
CATGGGGCGCCGGCGAGTGAGTTGGGTGAATACGCGAACATGGGAGAAGG
GTCGACGTTCAGCGCCTTGTGGGCACGGCTGAGGGGAGGACAGAAGGGTC
GAGAGAAAGCGGTGACGGAGCAGGTGACGATGGAGGGGAAGAGCAAGCGT
CAGTAA
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Coding sequence (CDS) from alignment at chr25:18985..21040+

>NO25G00120.1 ID=NO25G00120.1|Name=NO25G00120.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr25:18985..21040+ (Nannochloropsis oceanica)
ATGACAACCATAAACAGAAGCAGCAGTTGCAGCAGCAGCAGCAGCGTCGG
CGTGGGTGGCCACATGCATGCTACCGATTCTTCCTCCCCCTCCTTTAACA
AACCCACTCTCCCCAGCCAGACGCAGCTCGCCAGCGCCAACGCGCCCATG
TCCAGCCAGCAAGAAGCATACCTCCCTGAAATCCAGTCTTATGCCCACAG
CAATCTTCCCTTCATGACCACCACGCCCGAGACTCCTGCCAGTGCGCGTC
GGCCCCTGGCACAGTACCTCGAGGAAAAGGGGTTAATTGCACCAGGGGTA
GCTCGTGCGACCCAGGCGGCATCGGTTGAAAAGCCGTTTGGATCGGCGCC
TGAAGGGCCGAATTATAAGAAGATGGGGACCCCCTTGCGTTCGGTGATGC
AGCAACACGTGGATTTCTTCGACCGTGACGGGGACGGGGTCATTACCATG
CGGGACACCTTTTTCGGGTTTCGCCGCCTGGGCTTCAATTGGGCCTTTTG
CCTGTGGGCAGTCTTCGTCATTAATCCCGCGTTTTCCATTGCCTCTTACC
CGGGCTATTTCATTGACCCCTTCATGTGCATCTACTCCCGTAACATCCAC
CGTGGCAAGCATGGAAGTGACCAGGAGGTATACGATCACGAAGGTCGCTT
CATTCCTCAGCGCTTTGAAGACATTTTTGCCAAGTGGGATCAAGAGGGAA
AGGGCGGCCTTAGCCTCCGTGACTTGTGGAAAATGACGCAGAGCTCCTTC
GAGGTGAATGATTTCTTCGGCTGGTTCGCCGGCAAGTTCGAGTGGTTTAC
CCTCTGGCTTCTCACTGCTGATGACAAGGGCCTGGTGACCAAAGAGGCCG
TGCGGAGTGTTTATGACGGAAGCTTGTTCTACAAGATGGAGGCCAAGTGG
GGGCATGGGGCGCCGGCGAGTGAGTTGGGTGAATACGCGAACATGGGAGA
AGGGTCGACGTTCAGCGCCTTGTGGGCACGGCTGAGGGGAGGACAGAAGG
GTCGAGAGAAAGCGGTGACGGAGCAGGTGACGATGGAGGGGAAGAGCAAG
CGTCAGTAA
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Synonyms
Publications