NO25G00070.1, NO25G00070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00070.1
Unique NameNO25G00070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1192
Alignment locationchr25:8608..9997 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:8608..9997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00070NO25G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00070.1NO25G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00070.1.cds1NO25G00070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00070.1.cds2NO25G00070.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00070.1 ID=NO25G00070.1|Name=NO25G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1192bp
CGCCTCCCCTTCCCCCCTCCCCCCCTACCTCAAGGGATGTGGCCGACATG
ATTCTCGTCGCCCGCCGTCTTGTTGCCCGCTTGTGCCAAAACAAATCCAT
TGGATACCATGGAAGGAGGGTGCTCAACTGTCTCATCGTGCAGGAGGTAG
AGCAAGAGACGAAGCGGCGTCTCCCCGCAGTGTGGCTCCAGGCGGTTCTT
CTCGAGATGGAACGTCAAGGCCTGGGGAGACGATTAGCTTCCACCGTCTT
TGCATTTTCCGGACCCCTCGACAGCCGCCTTGTCAGGGAGGGCGAGGAAG
GGAGGGAGGGCGTGAGGGAGGGAAGGCAGGAAGGGAGGGGAGATCGGTCA
GTCTCAGTTGCATTTCTTTCCGATCCCCCCCCCCCTTCCCACCCTCCCTC
CTCCTCCTCAGGGCCGCAGCTGCAGCCCGAGCCGACACAGGACGAAAGAG
GAGGAGGGCAAAGGCGGCGCGGCTGGGGTCAGAGAAGAAATGAGACGGAC
TTTTTCGTGAGCACGCCTGACGTGCCGGGGGAGGGAGGGGGGGATGAGGG
GTTGCTGGTGATGAGGGGGGAAGCGGATGCCTCGGGAGAGGTCACACCGC
GCATGTTAATAAGGCCCGACGCCTCCGAGGGGTGGGACAGGGTGATGGCA
GGGGAAGAGGAGGAAGGAGGGACTTAGGGGGGGTGCAGGGGCGGGAGGAG
GGATGGAAGGAGAGAGGGAGGAAAGAGCAATGGAGGGAGGGAGGCCACTT
TCCGATGTGCTGGTGACTAAGAGATGACGGAGCTCGTGGACTTGGCGGCA
ATGGTGAGACAGTTGGACGATAGCGATGAGGAGTGAGATTAGAAGGAGGG
AGAAGAGAGGGGAGAAAAGTGAGGGAAGGAAGGAGGAAGAGAGGGAGGAC
GAGGGGAAGGAGAGAAGCGGATGTACAGTAGCCCTGGATAAAGAGACTTA
GAATGAAGCTTAAGAGCAAATGCAGGGGCAAGGGCCGATGACAAATTTAT
ACACGAAAGATTATGCATTTAGGGAGTTGTATAATTGTGTCTGTGTTTCT
ACATGTGTCTGCATTTACCTGTTCGTGTCTGCGTGCCTGTGTTGAGAAAC
AGTCCGACGGGAAAAGGGGGCAGAAAGAACAAAACCGGAAACAAGAAACG
AGTTGTGTAATGAAACAAAACGACGCCGTCTATTTACGAGAA
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protein sequence of NO25G00070.1

>NO25G00070.1-protein ID=NO25G00070.1-protein|Name=NO25G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MILVARRLVARLCQNKSIGYHGRRVLNCLIVQEVEQETKRRLPAVWLQAV
LLEMERQGLGRRLASTVFAFSGPLDSRLVREGEEGREGVREGRQEGRGDR
SVSVAFLSDPPPPSHPPSSSSGPQLQPEPTQDERGGGQRRRGWGQRRNET
DFFVSTPDVPGEGGGDEGLLVMRGEADASGEVTPRMLIRPDASEGWDRVM
AGEEEEGGT*
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mRNA from alignment at chr25:8608..9997+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00070.1 ID=NO25G00070.1|Name=NO25G00070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp|location=Sequence derived from alignment at chr25:8608..9997+ (Nannochloropsis oceanica)
CGCCTCCCCTTCCCCCCTCCCCCCCTACCTCAAGGGATGTGGCCGACATG
ATTCTCGTCGCCCGCCGTCTTGTTGCCCGCTTGTGCCAAAACAAATCCAT
TGGATACCATGGAAGGAGGGTGCTCAACTGTCTCATCGTGCAGGAGGTAG
AGCAAGAGACGAAGCGGCGTCTCCCCGCAGTGTGGCTCCAGGTACGTCTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTCCCTCCCTCCCTCC
TTCTCTCCCTCTTCCATCGTATCCAGCACCTCGAACCCATCATTCTGACA
CACTCATCTCCCCCTCCCACCAGACAAACCTCAAATGACCCATCGCTCCC
TCCCTCCCTCCCGCCCGCCCTCCCTCCCTCCCTCCTCAGGCGGTTCTTCT
CGAGATGGAACGTCAAGGCCTGGGGAGACGATTAGCTTCCACCGTCTTTG
CATTTTCCGGACCCCTCGACAGCCGCCTTGTCAGGGAGGGCGAGGAAGGG
AGGGAGGGCGTGAGGGAGGGAAGGCAGGAAGGGAGGGGAGATCGGTCAGT
CTCAGTTGCATTTCTTTCCGATCCCCCCCCCCCTTCCCACCCTCCCTCCT
CCTCCTCAGGGCCGCAGCTGCAGCCCGAGCCGACACAGGACGAAAGAGGA
GGAGGGCAAAGGCGGCGCGGCTGGGGTCAGAGAAGAAATGAGACGGACTT
TTTCGTGAGCACGCCTGACGTGCCGGGGGAGGGAGGGGGGGATGAGGGGT
TGCTGGTGATGAGGGGGGAAGCGGATGCCTCGGGAGAGGTCACACCGCGC
ATGTTAATAAGGCCCGACGCCTCCGAGGGGTGGGACAGGGTGATGGCAGG
GGAAGAGGAGGAAGGAGGGACTTAGGGGGGGTGCAGGGGCGGGAGGAGGG
ATGGAAGGAGAGAGGGAGGAAAGAGCAATGGAGGGAGGGAGGCCACTTTC
CGATGTGCTGGTGACTAAGAGATGACGGAGCTCGTGGACTTGGCGGCAAT
GGTGAGACAGTTGGACGATAGCGATGAGGAGTGAGATTAGAAGGAGGGAG
AAGAGAGGGGAGAAAAGTGAGGGAAGGAAGGAGGAAGAGAGGGAGGACGA
GGGGAAGGAGAGAAGCGGATGTACAGTAGCCCTGGATAAAGAGACTTAGA
ATGAAGCTTAAGAGCAAATGCAGGGGCAAGGGCCGATGACAAATTTATAC
ACGAAAGATTATGCATTTAGGGAGTTGTATAATTGTGTCTGTGTTTCTAC
ATGTGTCTGCATTTACCTGTTCGTGTCTGCGTGCCTGTGTTGAGAAACAG
TCCGACGGGAAAAGGGGGCAGAAAGAACAAAACCGGAAACAAGAAACGAG
TTGTGTAATGAAACAAAACGACGCCGTCTATTTACGAGAA
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Coding sequence (CDS) from alignment at chr25:8608..9997+

>NO25G00070.1 ID=NO25G00070.1|Name=NO25G00070.1|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at chr25:8608..9997+ (Nannochloropsis oceanica)
ATGATTCTCGTCGCCCGCCGTCTTGTTGCCCGCTTGTGCCAAAACAAATC
CATTGGATACCATGGAAGGAGGGTGCTCAACTGTCTCATCGTGCAGGAGG
TAGAGCAAGAGACGAAGCGGCGTCTCCCCGCAGTGTGGCTCCAGGCGGTT
CTTCTCGAGATGGAACGTCAAGGCCTGGGGAGACGATTAGCTTCCACCGT
CTTTGCATTTTCCGGACCCCTCGACAGCCGCCTTGTCAGGGAGGGCGAGG
AAGGGAGGGAGGGCGTGAGGGAGGGAAGGCAGGAAGGGAGGGGAGATCGG
TCAGTCTCAGTTGCATTTCTTTCCGATCCCCCCCCCCCTTCCCACCCTCC
CTCCTCCTCCTCAGGGCCGCAGCTGCAGCCCGAGCCGACACAGGACGAAA
GAGGAGGAGGGCAAAGGCGGCGCGGCTGGGGTCAGAGAAGAAATGAGACG
GACTTTTTCGTGAGCACGCCTGACGTGCCGGGGGAGGGAGGGGGGGATGA
GGGGTTGCTGGTGATGAGGGGGGAAGCGGATGCCTCGGGAGAGGTCACAC
CGCGCATGTTAATAAGGCCCGACGCCTCCGAGGGGTGGGACAGGGTGATG
GCAGGGGAAGAGGAGGAAGGAGGGACTTAG
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Synonyms
Publications