NO25G00040.1, NO25G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00040.1
Unique NameNO25G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length210
Alignment locationchr25:5904..6473 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:5904..6473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00040NO25G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00040.1NO25G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00040.1.cds1NO25G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00040.1.cds2NO25G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00040.1.cds3NO25G00040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00040.1 ID=NO25G00040.1|Name=NO25G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=210bp
ATGTCTAGGACGACCCGATATCCTGCCAATCGCAATGATGAATGCATCAT
TCCCCGACGCAGCACCCATCAACCTTCTCCGCACTACCAGCAGCGGGAAG
GAAGGTGGGCGGGAGGGCGGGGGGAGAGCTTGTACCGGGCGGAGAGCATC
AGTGGAACGCCCAACACGCGGTCCTCCTCGACCCTCCACGACGGACGCGT
GACTGTCTAG
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protein sequence of NO25G00040.1

>NO25G00040.1-protein ID=NO25G00040.1-protein|Name=NO25G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=70bp
MSRTTRYPANRNDECIIPRRSTHQPSPHYQQREGRWAGGRGESLYRAESI
SGTPNTRSSSTLHDGRVTV*
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mRNA from alignment at chr25:5904..6473+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00040.1 ID=NO25G00040.1|Name=NO25G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=570bp|location=Sequence derived from alignment at chr25:5904..6473+ (Nannochloropsis oceanica)
ATGTCTAGGACGACCCGATGTGCGTAACACCCCTCTCTCCCCGTCTCCCT
CCTCCCCTCCCTCCCCCTCTCCTACCTCCCCTCCCTCCCTCCCTCCCTCC
CTCCTTCTCTCCCTGCTTACCTCTCTGCTCTCTCCCACCCAAATTCCCTT
CACCCATCAGATCCTGCCAATCGCAATGATGAATGCATCATTCCCCGACG
CAGCACCCATCAACCTTCTCCGCACTACCAGCAGCGGGAAGGAAGGTGGG
CGGGAGGGCGGGGGGAGAGCTTGTACCGGGCGGAGAGCATCAGTGGAACG
CCCAACACGCGGTCCTCCTCGACCCTCCACGTATCTCCCTCTTACAGCGA
TGACCGACCCCTTCAAGCGCTCGTCTCTCACAGGGGAGGCAGGGAAAGAG
GCACTGAAAGTGGCACGGAAAGAAGCAGGGAAAGAGGCATCGAGGGGGGC
CTCAACGGCCACGGTCCTCTCCTTGCCCTCCCTCCCTTCATCCCTCCCTC
CATCCCTCCATTTCCCCCTACCTCCTCCCTCCCTGACCTCCCCTTCCAGG
ACGGACGCGTGACTGTCTAG
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Coding sequence (CDS) from alignment at chr25:5904..6473+

>NO25G00040.1 ID=NO25G00040.1|Name=NO25G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=210bp|location=Sequence derived from alignment at chr25:5904..6473+ (Nannochloropsis oceanica)
ATGTCTAGGACGACCCGATATCCTGCCAATCGCAATGATGAATGCATCAT
TCCCCGACGCAGCACCCATCAACCTTCTCCGCACTACCAGCAGCGGGAAG
GAAGGTGGGCGGGAGGGCGGGGGGAGAGCTTGTACCGGGCGGAGAGCATC
AGTGGAACGCCCAACACGCGGTCCTCCTCGACCCTCCACGACGGACGCGT
GACTGTCTAG
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Synonyms
Publications