NO25G00030.1, NO25G00030.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO25G00030.1
Unique Name	NO25G00030.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1638
Alignment location	chr25:3256..5434 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr25	genome	chr25:3256..5434 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO25G00030.1 vs.

BLAST of NO25G00030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO25G00030	NO25G00030	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO25G00030.1	NO25G00030.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO25G00030.1.cds1	NO25G00030.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00030.1.cds2	NO25G00030.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00030.1.cds3	NO25G00030.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO25G00030.1.cds4	NO25G00030.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr25:3256..5434-
coding sequence from alignment at chr25:3256..5434-

mRNA sequence

>NO25G00030.1 ID=NO25G00030.1|Name=NO25G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1638bp
ATGCCTTCCAGTCCTCCCACGCAACCAAGTACAAGGGAGGGGATGGAGGC
TGCCCCGGCGACGCAAGAAGAAGAGGAAGAGGAAGAGGGAACGTATTGCG
ATGAAGAAGAGGGAGAAGAAGAGGGGACATATTGCGATGACGATGAGATG
GAGGGACGAACGCTTTGCGACTCAGTCGACACAATATTTGTAGAGGACGA
GGGGGACGGGGAGGAGGACGAGGGGAAGGCGGAAGGGGTGCAGGTAGCAA
CAGGCTCTCTGGAGGGAGGGACAAGTGTAGGGAGGTGGGGGCTAGAAGAC
AAGGAGGAAGAGGGTGCAGAATCGGTTGTGAGACGTTTCTCTCGCCTGAG
TGTAGGGCAGCAGCCGCACCACCACCAGCAGCCGCAGCAGCAGCACCTCC
AGCAGCAGCAGCACCAGCACCAGCAGCAATGGCAGGAGGAGCAACAGCAG
GCCACACAGTGTGAGGAGGAGGAGGAGGAAAAGGAGGAAGAAGAGGAGGA
CGGGAACGGGGAAGAGGGAGGAAAGGAGGGAGGGAAGGGGGTTAAAGAGG
AAACCCCAGAAATCCTTGAGGAGGAGGAGGAGAAGGAAGGTCGCTGCCAT
CATCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCATCA
GCAGCAAGAGGAGGAGGGGCAGCAGCAGCAGCAAGCCACGCAACCTCTCC
CGCTGCCCTTCACCCCTCCCTCCGCCTTGAGAAAGGAAGAGAAGGAGGGG
CAGGGGCAGGGGAGGAGGGGAGGAGGGAGGGCGAGGGTGGTTGGAAGTGG
CGGTGGAGGGGAGTGGTGCATGACTACTCTTGACGCTGATAACGAGGAAG
AGGAGGAGGAGGAGGACGAGGAGGAGGAAGAGGAGGAGACTCAAGACCCA
CGACAGCAGCAGCTCCCTCCCTCCCTCCCTCCCCAGCAACAGCAACAGCA
ACAGCAGCAGCACAACCCACCTCATTCCTCCGCTTCCTCGCTCCCGCCCT
CATGCTCCTCCCCCTCGACCTCTCGTCGTCTGTGGGCCATGGACAAGCCC
GAGGCCCTGCCGTCCAACGAGCTGGTGGACCTGGAGCGGAGGGAGGGAGG
GAGGGAGGGAGGAAGAGAGAGAGGTCGAGGAGCTGCTTCTGGACTGGTGG
ACCCGGAGTATAGGAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGTGGA
GGAGGAGGGGGCGACGACGAACGGCACACCGACCCACAAGTTTCCTTTCC
GACCTCGCCCCCCCCCCTTGTCCTCCACCCCTCCCTCCCCCTCCCTCCCT
CCCCCTCCTTCGCGCCTTCCGCAGTGAAGCCCAACGCCTGCTGGCCTGGA
CGGCCCATCGAGAAGGCCATGACCTCCTCCCTCCCGCCTTCCCTCCCTCC
CTCCCTCCCGTCCTCCGCCCCCTCAGCAACAACGTACCCAAGCAGCAGCA
GCAGCAGCAGTACGACAAACACCTCTTCTACCAGCAGCAGCAGCAGCAGC
AACAACAACAACAGCTAAGCAAGCCAAAGCACACAGCCCCCTCTCCCCTC
CCCTCTTCCCTCTCTGCCTCCCTCCCCACCTGCAGCTCTCTCGTCTATCT
TCCCCCCCCTCCCTCCCTCCCTCCCTCGACCACCAGCC

protein sequence of NO25G00030.1

>NO25G00030.1-protein ID=NO25G00030.1-protein|Name=NO25G00030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp
MPSSPPTQPSTREGMEAAPATQEEEEEEEGTYCDEEEGEEEGTYCDDDEM
EGRTLCDSVDTIFVEDEGDGEEDEGKAEGVQVATGSLEGGTSVGRWGLED
KEEEGAESVVRRFSRLSVGQQPHHHQQPQQQHLQQQQHQHQQQWQEEQQQ
ATQCEEEEEEKEEEEEDGNGEEGGKEGGKGVKEETPEILEEEEEKEGRCH
HQQQQQQQQQQQQQQHQQQEEEGQQQQQATQPLPLPFTPPSALRKEEKEG
QGQGRRGGGRARVVGSGGGGEWCMTTLDADNEEEEEEEDEEEEEEETQDP
RQQQLPPSLPPQQQQQQQQQHNPPHSSASSLPPSCSSPSTSRRLWAMDKP
EALPSNELVDLERREGGREGGRERGRGAASGLVDPEYRKGGREGGREGGG
GGGGDDERHTDPQVSFPTSPPPLVLHPSLPLPPSPSFAPSAVKPNACWPG
RPIEKAMTSSLPPSLPPSLPSSAPSATTYPSSSSSSSTTNTSSTSSSSSS
NNNNS*

mRNA from alignment at chr25:3256..5434-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO25G00030.1 ID=NO25G00030.1|Name=NO25G00030.1|organism=Nannochloropsis oceanica|type=mRNA|length=2179bp|location=Sequence derived from alignment at chr25:3256..5434- (Nannochloropsis oceanica)
ATGCCTTCCAGTCCTCCCACGCAACCAAGGTATGTCCTCGTCCTGCACCC
CCCCGCCCCATATCGCTATCTCCCTACATTAAGCATTGTGGATTGGATGG
TGCAAGTAGTTTCGAACGTTTTGAAAGCGTCTGAATTTGGCCTATTATTT
TTGATTCCTCCGTTCCTCCCCGCCCCCACCGTCCTCTCCTTTCTCGCTCT
CCCCTTTGACGGGCAGTACAAGGGAGGGGATGGAGGCTGCCCCGGCGACG
CAAGAAGAAGAGGAAGAGGAAGAGGGAACGTATTGCGATGAAGAAGAGGG
AGAAGAAGAGGGGACATATTGCGATGACGATGAGATGGAGGGACGAACGC
TTTGCGACTCAGTCGACACAATATTTGTAGAGGACGAGGGGGACGGGGAG
GAGGACGAGGGGAAGGCGGAAGGGGTGCAGGTAGCAACAGGCTCTCTGGA
GGGAGGGACAAGTGTAGGGAGGTGGGGGCTAGAAGACAAGGAGGAAGAGG
GTGCAGAATCGGTTGTGAGACGTTTCTCTCGCCTGAGTGTAGGGCAGCAG
CCGCACCACCACCAGCAGCCGCAGCAGCAGCACCTCCAGCAGCAGCAGCA
CCAGCACCAGCAGCAATGGCAGGAGGAGCAACAGCAGGCCACACAGTGTG
AGGAGGAGGAGGAGGAAAAGGAGGAAGAAGAGGAGGACGGGAACGGGGAA
GAGGGAGGAAAGGAGGGAGGGAAGGGGGTTAAAGAGGAAACCCCAGAAAT
CCTTGAGGAGGAGGAGGAGAAGGAAGGTCGCTGCCATCATCAGCAGCAGC
AGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCATCAGCAGCAAGAGGAG
GAGGGGCAGCAGCAGCAGCAAGCCACGCAACGTGAGGATGAGGGCGACGA
CGAGGAAACGGGGAAGAAAAGAAGCAACTTTCCACCACCCATCCCCCAAC
GCCCTTCCCTCCTTTCCTCCCTCCCTCCCTCCCCCATCCCGGACCATGCA
ATCCCACTCGACCAAGACGACAGCGTGCTCCTCTCCCCCGACCTCCTTCA
ATCTATCCCTTCCTCCCTCCCCCCTTCCTCGCTTCCTCCCTCTCTACTTC
CACCCTCTACCCCTCCCCCTCCAACACACCTCGAGCCCCTCAAGCTCTCC
CGCTGCCCTTCACCCCTCCCTCCGCCTTGAGAAAGGAAGAGAAGGAGGGG
CAGGGGCAGGGGAGGAGGGGAGGAGGGAGGGCGAGGGTGGTTGGAAGTGG
CGGTGGAGGGGAGTGGTGCATGACTACTCTTGACGCTGATAACGAGGAAG
AGGAGGAGGAGGAGGACGAGGAGGAGGAAGAGGAGGAGACTCAAGACCCA
CGACAGCAGCAGCTCCCTCCCTCCCTCCCTCCCCAGCAACAGCAACAGCA
ACAGCAGCAGCACAACCCACCTCATTCCTCCGCTTCCTCGCTCCCGCCCT
CATGCTCCTCCCCCTCGACCTCTCGTCGTCTGTGGGCCATGGACAAGCCC
GAGGCCCTGCCGTCCAACGAGCTGGTGGACCTGGAGCGGAGGGAGGGAGG
GAGGGAGGGAGGAAGAGAGAGAGGTCGAGGAGCTGCTTCTGGACTGGTGG
ACCCGGAGTATAGGAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGTGGA
GGAGGAGGGGGCGACGACGAACGGTGCGTACCGTCGTGGGCTTTGGGGGT
AGGAAAGAAGCTGCAGTCGCTCATCCCCTCCTCCCTTCCTCCCTCCCTCC
CTCCCCTCACACAGGCACACCGACCCACAAGTTTCCTTTCCGACCTCGCC
CCCCCCCCTTGTCCTCCACCCCTCCCTCCCCCTCCCTCCCTCCCCCTCCT
TCGCGCCTTCCGCAGTGAAGCCCAACGCCTGCTGGCCTGGACGGCCCATC
GAGAAGGCCATGACCTCCTCCCTCCCGCCTTCCCTCCCTCCCTCCCTCCC
GTCCTCCGCCCCCTCAGCAACAACGTACCCAAGCAGCAGCAGCAGCAGCA
GTACGACAAACACCTCTTCTACCAGCAGCAGCAGCAGCAGCAACAACAAC
AACAGCTAAGCAAGCCAAAGCACACAGCCCCCTCTCCCCTCCCCTCTTCC
CTCTCTGCCTCCCTCCCCACCTGCAGCTCTCTCGTCTATCTTCCCCCCCC
TCCCTCCCTCCCTCCCTCGACCACCAGCC

Coding sequence (CDS) from alignment at chr25:3256..5434-

>NO25G00030.1 ID=NO25G00030.1|Name=NO25G00030.1|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at chr25:3256..5434- (Nannochloropsis oceanica)
ATGCCTTCCAGTCCTCCCACGCAACCAAGTACAAGGGAGGGGATGGAGGC
TGCCCCGGCGACGCAAGAAGAAGAGGAAGAGGAAGAGGGAACGTATTGCG
ATGAAGAAGAGGGAGAAGAAGAGGGGACATATTGCGATGACGATGAGATG
GAGGGACGAACGCTTTGCGACTCAGTCGACACAATATTTGTAGAGGACGA
GGGGGACGGGGAGGAGGACGAGGGGAAGGCGGAAGGGGTGCAGGTAGCAA
CAGGCTCTCTGGAGGGAGGGACAAGTGTAGGGAGGTGGGGGCTAGAAGAC
AAGGAGGAAGAGGGTGCAGAATCGGTTGTGAGACGTTTCTCTCGCCTGAG
TGTAGGGCAGCAGCCGCACCACCACCAGCAGCCGCAGCAGCAGCACCTCC
AGCAGCAGCAGCACCAGCACCAGCAGCAATGGCAGGAGGAGCAACAGCAG
GCCACACAGTGTGAGGAGGAGGAGGAGGAAAAGGAGGAAGAAGAGGAGGA
CGGGAACGGGGAAGAGGGAGGAAAGGAGGGAGGGAAGGGGGTTAAAGAGG
AAACCCCAGAAATCCTTGAGGAGGAGGAGGAGAAGGAAGGTCGCTGCCAT
CATCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCATCA
GCAGCAAGAGGAGGAGGGGCAGCAGCAGCAGCAAGCCACGCAACCTCTCC
CGCTGCCCTTCACCCCTCCCTCCGCCTTGAGAAAGGAAGAGAAGGAGGGG
CAGGGGCAGGGGAGGAGGGGAGGAGGGAGGGCGAGGGTGGTTGGAAGTGG
CGGTGGAGGGGAGTGGTGCATGACTACTCTTGACGCTGATAACGAGGAAG
AGGAGGAGGAGGAGGACGAGGAGGAGGAAGAGGAGGAGACTCAAGACCCA
CGACAGCAGCAGCTCCCTCCCTCCCTCCCTCCCCAGCAACAGCAACAGCA
ACAGCAGCAGCACAACCCACCTCATTCCTCCGCTTCCTCGCTCCCGCCCT
CATGCTCCTCCCCCTCGACCTCTCGTCGTCTGTGGGCCATGGACAAGCCC
GAGGCCCTGCCGTCCAACGAGCTGGTGGACCTGGAGCGGAGGGAGGGAGG
GAGGGAGGGAGGAAGAGAGAGAGGTCGAGGAGCTGCTTCTGGACTGGTGG
ACCCGGAGTATAGGAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGTGGA
GGAGGAGGGGGCGACGACGAACGGCACACCGACCCACAAGTTTCCTTTCC
GACCTCGCCCCCCCCCCTTGTCCTCCACCCCTCCCTCCCCCTCCCTCCCT
CCCCCTCCTTCGCGCCTTCCGCAGTGAAGCCCAACGCCTGCTGGCCTGGA
CGGCCCATCGAGAAGGCCATGACCTCCTCCCTCCCGCCTTCCCTCCCTCC
CTCCCTCCCGTCCTCCGCCCCCTCAGCAACAACGTACCCAAGCAGCAGCA
GCAGCAGCAGTACGACAAACACCTCTTCTACCAGCAGCAGCAGCAGCAGC
AACAACAACAACAGCTAA

Synonyms

Publications