NO25G00020.1, NO25G00020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00020.1
Unique NameNO25G00020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length593
Alignment locationchr25:2278..3089 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:2278..3089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO25G00020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00020NO25G00020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00020.1NO25G00020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00020.1.cds1NO25G00020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO25G00020.1.cds2NO25G00020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00020.1 ID=NO25G00020.1|Name=NO25G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=593bp
CTCCCACCCGCCCGCCCTCCTTATCTATCCCCCGGAGGGGAGGGCGCGAG
CCCGTCTCTCTTTGAGCTCGATCAAGGCAGCCAAGATAGTGCTGGTCACA
TGGAAGATCTTCACCTCCAAGGACGTGATTTTGAACCGCCGGACGGGCGA
CTGGCTTCAGGGGCGGAGGAGGCAGTGGGGGAGGGAGGGGGCGAGGAAGG
GAAGGAGAAGGGACGGTGCGGCCAGAGGCGAGGAAGGGAGGGAGGAAAAG
GAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGA
GGAGGAGGAAGGGAGTAGGCTGATGGAAATCAAGTGGTGGAGGGTGGTGA
TAGATGAAGGGCACAAGGCTACCGGAGCGGGAGGGAGGGAGGGAGGGACG
GAGGGAGGGAGGGGGGCGGCGATGCGGAAGTTAAAGGCCGCACATAGGTG
GTTGTTGGTGGATGGGGAGGCAGTGATGACGAAGGGAAGGAGGAAGGGAG
GGAGGAAGGGAGGGAGGGAGAGGGAGAGGGAGGAGTGGGGGATGACGGAG
GACGGGCTGGTGAGGGAGTGGATGGAGGCTCTGTTTGGGAGGG
back to top

protein sequence of NO25G00020.1

>NO25G00020.1-protein ID=NO25G00020.1-protein|Name=NO25G00020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MEDLHLQGRDFEPPDGRLASGAEEAVGEGGGEEGKEKGRCGQRRGREGGK
GEEEEEGGGGGGGGGGRGGGRE*
back to top

mRNA from alignment at chr25:2278..3089-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00020.1 ID=NO25G00020.1|Name=NO25G00020.1|organism=Nannochloropsis oceanica|type=mRNA|length=812bp|location=Sequence derived from alignment at chr25:2278..3089- (Nannochloropsis oceanica)
CTCCCACCCGCCCGCCCTCCTTATCTATCCCCCGGAGGGGAGGGCGCGAG
CCCGTCTCTCTTTGAGCTCGATCAAGGCAGCCAAGATAGTGCTGGTCACA
TGGAAGGTGAGGGAAGGAGGGAAGGAAGGAGGGAGGAAGAGAAGGAGAGA
GGGATTGAAGGAAGGAATGAAGGAGGGAGGGAGCGAGGGAGGGAGCGAGG
GAGGGGCACTTCTTGTGGGATGTCGATCTATAGTTGACACCTGTTTTTTA
TTGTCTTCTTAACTCCTCCCTTCCCCTTCCCTCCCTCCCTCCCATCCTTC
CTTTCCTCCCTCCCTCCCTTCCTAGATCTTCACCTCCAAGGACGTGATTT
TGAACCGCCGGACGGGCGACTGGCTTCAGGGGCGGAGGAGGCAGTGGGGG
AGGGAGGGGGCGAGGAAGGGAAGGAGAAGGGACGGTGCGGCCAGAGGCGA
GGAAGGGAGGGAGGAAAAGGAGAAGAAGAAGAAGAAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAAGAGGAGGAGGAAGGGAGTAGGCTGATGGAAATC
AAGTGGTGGAGGGTGGTGATAGATGAAGGGCACAAGGCTACCGGAGCGGG
AGGGAGGGAGGGAGGGACGGAGGGAGGGAGGGGGGCGGCGATGCGGAAGT
TAAAGGCCGCACATAGGTGGTTGTTGGTGGATGGGGAGGCAGTGATGACG
AAGGGAAGGAGGAAGGGAGGGAGGAAGGGAGGGAGGGAGAGGGAGAGGGA
GGAGTGGGGGATGACGGAGGACGGGCTGGTGAGGGAGTGGATGGAGGCTC
TGTTTGGGAGGG
back to top

Coding sequence (CDS) from alignment at chr25:2278..3089-

>NO25G00020.1 ID=NO25G00020.1|Name=NO25G00020.1|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at chr25:2278..3089- (Nannochloropsis oceanica)
ATGGAAGATCTTCACCTCCAAGGACGTGATTTTGAACCGCCGGACGGGCG
ACTGGCTTCAGGGGCGGAGGAGGCAGTGGGGGAGGGAGGGGGCGAGGAAG
GGAAGGAGAAGGGACGGTGCGGCCAGAGGCGAGGAAGGGAGGGAGGAAAA
GGAGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAG
AGGAGGAGGAAGGGAGTAG
back to top
Synonyms
Publications