Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr24 genome chr24:668577..672985 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G02440.1 vs.
Match: PRW45135.1 (hypothetical protein C2E21_6370 [Chlorella sorokiniana])
HSP 1 Score: 180.6 bits (457), Expect = 1.700e-41
Identity = 182/632 (28.80%), Postives = 291/632 (46.04%), Query Frame = 0
Query: 82 SSFSTLSTPSPDWHHKTLWPLDTRDYVTLALATIGLILAAGEGMGGGVILVPLFILVLDLPLRRAIPLSNVTILGGALANTWHSLSQSHP-QANRQLVDWNMVLMIGPTAIVSAVAGTSLNKILPEVVIYLLLVAVLAALATRVLQKGLKALELEGRWAHQWYQTRRGQ----GETAALLACP--EGPAHAEGNAS---LSPDAMTQSATPVPAPARAPPRAGVAAAANAATGEGEAKEGEGRLEDGQGGRASSFLPSWIGTIEDQEVVGVSDYGAILSTPPSSAARTRT---PTP---SKAKKKVLLTPVMVLQSEEEGGRAGGEEEDMWSSPFEGLFSPRRGSSLSPSKGKNRVLLTPITPERQREGGGWKVEEEQEWEQAEEVKEEWVSRERGEFKDDMSYATHVSSAELDIMTEEGGGGTDWWKPLALGVCFLGVIVADVLKGGKGSRSPLGITCGSQAYWLVMLATLPWVGVFLYKFRQFIMEDCAAKLRSGYNIHMPGEVWWTRTKAVQAHGLGATAGLAAGVVGIGDIMIEDILLLEMGVLPAVAAASAAVLILYTAAAAAAAFCVFGQLSRDYGALFFVWGLGCTLVGRMVVSRMVRQHNRESLILLSIGAATLLSVIMMGREG 698
S+ S+ T + HK LWPLD D+ L A + L+LAA G+GGG ILVPL+++VL A+ LSN+TI+GG LAN + ++ HP R L+DW++V+++ P+ I+ AVAG +NK+LP + + L +L + ++LQK L E R Q G+ + + P + H EG+AS L+P T+ AT +PA A A + +++AA A G L + +S EV + GA L+ S+ A R P P + ++ +L+P++ Q + G GE + L + G ++ +P++P Q+ G ++ + +KDD +++ W K L + GV+ D+LK S +P C S +YWL A +P L R +++ A+ +GY + G+V WT + L AGL AGV G+G +++ L+LEMGVLP VAAA++A +I +T+ +AA F FG + DY A F GL T+ G++ + + R SL++ + A LS + + +G
Sbjct: 394 SNGSSNGTEAGPQQHKPLWPLDGSDWAGLGTAVVALLLAATGGIGGGAILVPLYLMVLGFSTAGAVALSNITIVGGTLANLAFNTARVHPLHPERPLIDWSLVMVMEPSTILGAVAGGYINKVLPAWLTTITLCLLLLFVTHKMLQKALDIRSKERRALQQSLARLSAVDAEGGDFSDRIPTPLLQPLLHLEGSASEDDLAPAGSTR-ATSLPALAALERHASSSGSSSAAGNSSGAAGAAGVLRQPEDSASS-------------EVHVDVEAGAGLTGEGSAGAMQRAASKPVPIGQASSRALPMLSPIIDHQDTQLGS---GEHHQL----------------LVQADGSHQPPSSPLSPS-QKAG-------------LHSSSSGSLTGKTWPYKDDAQWSSRKGGGSAPARRRRWRPHVPWGKLAVLLLLLAGVVGFDILK----SLAP----CPSLSYWLRATAMVPVTLATLLGVRSYLLRKDRAQRAAGYE-QLEGDVQWTPRSTLLYPALCTFAGLCAGVFGVGGGIVKGPLMLEMGVLPEVAAATSATMIWFTSCSAAVVFISFGAVQWDYAAACFALGLVSTVAGQLAMMWVSRHLRSRSLLVFLMAAVLGLSCLALAAQG 969
The following BLAST results are available for this feature:
BLAST of NO24G02440.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 2600 Expect = 1.70e-41 / Id = 28.80 Sequence PRW45135.1
Match Name E-value Identity Description
PRW45135.1 1.700e-41 28.80 hypothetical protein C2E21_6370 [Chlorella sorokin... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO24G02440.1 ID=NO24G02440.1|Name=NO24G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2748bp back to top protein sequence of NO24G02440.1
>NO24G02440.1-protein ID=NO24G02440.1-protein|Name=NO24G02440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=717bp back to top mRNA from alignment at chr24:668577..672985+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02440.1 ID=NO24G02440.1|Name=NO24G02440.1|organism=Nannochloropsis oceanica|type=mRNA|length=4409bp|location=Sequence derived from alignment at chr24:668577..672985+ (Nannochloropsis oceanica)ATGCAACACTTCAC
ATGTCAAATAAGCAGCAGCCAAGCAGATCATACCAGCACAAGCGCTATGG
TCAAAAGAGTGAGAATACGAAAGGGAGGATGGCAGACCCCCTACTCGGCA
GGCCCGGGTACTGTCATCGCCCTCCTTCTCTTTTTTGGTGCGTCGGTCTC
CATGCTGCCGCTTCGGGGGGAAACTAACGCGGTGAATGACAAGCATCGAT
GTACGTAAAAGGCGGTCACTGGTTCTTGAACATTTTGATTTTTTTTTCAC
ATCCTTTCGCTCACAAACTTCCACCGACAACAGTCTTGCGGGCCAACCTG
CCCTTTATCTCCTCGTCGTTTTCGACTTTGTCTACTCCTTCTCCAGACTG
GCATCACAAGACACTGTGGCCGCTTGATACACGGGACTATGTCACGCTTG
CTCTTGCCACAATCGGTTTAATTCTTGCCGCGGGGGAAGGGATGGGAGGC
GGGGTCATATTGGTGCCGCTTTTTATCCTCGTCCTCGACTTGCCGCTGAG
ACGTGCCATACCCCTATCGAACGTCACCATATTG GTAAGGAGGTCTTTAC
AACGAGGGGAGGAGAGGGAGAGGAAAGGGGTAGGAAAAAAGAGAAGATGG
GGCGAACCTGCGATTGGTCGTGAAAATACATGTTCTCATTGAGTTATTCG
TCACTCGAACACCTCATGTTTTGCCACCAGGGAGGTGCTCTTGCCAACAC
GTGGCACTCCCTCTCTCAGAGTCATCCGCAAGCAAACCGACAACTTGTGG
ACTGG GTAAGAGGAACGATCTGAGAGAGGAAGGGAAGGAGGGAGTGGGTG
GGAAGTGAGAGGAGAAATGTAAAGCCACGAGGCCTGGTGACTCACGCTTT
CGCTTCCTTTTCGACCGTCCCTCCTTCCTTCCTTCCCTCCCTCCATTCCT
GCCTTCCTTGCTATTCTCCATCAGAACATGGTACTCATGATTGGACCCAC
CGCCATCGTCAGCGCTGTGGCCGGAACCTCCCTCAATAAAATCCTGCCCG
AGGTCGTCATCTACCTACTTCTTGTGGCCGTGCTGGCTGCACTGGCGACT
CGGGTGCTGCAAAAG GTAGCGAGGAAAGGAGGAAGAGAGCGAGGAAAGGA
GGGAGACCTTTAAAAGTAGTGACGAGGATAGAGAGCATGTGAATAAGGAT
ATATATATATATATATATATACAGACCCACCTTCTCTCTTTTTGCCCTCC
TCATGCTTTCTTTGCCACCTCCCCTGCTTCCTTGCCTCCCTCCCTCCTCC
CCCTCCACCCTCCCTATACTTCCACGGGATAGGGCTTGAAGGCATTGGAG
TTGGAGGGCAGATGGGCTCATCAGTGGTATCAAACAAGAAGAGGACAGGG
AGAAACAGCTGCCTTATTAG GTGACGAGGGAGGCAGGGAGGGAGGGAGGG
AGGGAGGTTTAAAATCATTGTTTGCACGCGAGATGAGTCTTGCTAAAATT
GTCTCCTTGTTGTTTCCCTTCCTCCCTCTTCTCCTCCCTTTACCCCCCTC
CTCCCCATCTTCCAGCTTGTCCAGAAGGGCCGGCCCATGCAGAAGGTAAT
GCCTCGCTTTCGCCTGATGCCATGACCCAGTCAGCGACACCAGTACCAGC
ACCAGCACGAGCGCCACCACGAGCAGGAGTAGCAGCAGCAGCAAATGCAG
CCACAGGAGAGGGAGAGGCAAAGGAAGGAGAAGGCAGGTTGGAAGACGGG
CAGGGAGGGCGAGCATCTTCTTTCCTGCCGTCCTGGATAGGTACCATCGA
GGATCAG GTAGGGAGAGAGGGAGGAAGGGAGGGATGGAGGGAGGGAGAGG
GAGAAGGTCGGAGACATAAACCCAATATACAGGCGCATGCACTGTAAACA
GAAGCACGCATCAGGTAATATCCTCTTTTTTCCTCCGTCCTCTCGTCCCT
CCCCGTCCCCACAGGAGGTCGTGGGCGTCTCGGACTACGGAGCTATACTC
TCCACCCCTCCCTCCTCCGCCGCCAGGACCCGCACCCCCACCCCCTCGAA
AGCAAAAAAAAAGGTTCTCCTAACGCCCGTGATGGTGCTGCAAAGCGAGG
AGGAGGGCGGGAGGGCGGGTGGGGAGGAGGAGGACATGTGGTCTTCTCCC
TTTGAAGGCCTTTTCTCTCCTCGTCGTGGCTCCAGTCTGTCGCCGAGCAA
GGGAAAAAATCGAGTGCTCTTGACGCCCATCACCCCGGAGAGGCAGAGGG
AGGGGGGAGGATGGAAAGTGGAGGAGGAACAAGAGTGGGAGCAGGCGGAG
GAAGTGAAGGAGGAATGGGTGTCGAGGGAAAGGGGGGAATTCAAGGACGA
TATGAG GTTTGTTGGAAGGAAGGGAGAGAGGGAGAGAGGTAAAGGAAGTG
AGAGAGAGGCAAGTATGAAAAAGAGGAAGAGGTCAAGAGTGCAGGGCACC
GAGCTGATGGCTCATAACACGAATTCTTCCCTCCCTCCCTTCTTCCCTCC
CTCCCTTCTTCCCTCCATCCTCAGCTATGCCACCCACGTCTCCTCTGCGG
AACTGGACATTATGACGGAGGAGGGAGGAGGGGGCACTGACTGGTGGAAG
CCTTTGGCCCTCGGCGTCTGCTTCCTGGGCGTCATCGTCGCGGACGTGCT
CAAG GTACAGAGGCAGGGAAAGGGGAAGGGCGGGCGGAACATTTATATGT
TTTTTAGCCTTCTTTTCTTCTTGACCTTCTTGCTCTCTGGCGGGAGAGCC
CATTCACTTTTCGAGAATAATATTGCCCGTCTGTTCACCTTTGATATTCT
TCTCCTGCTTGACTGTCACAATCACCCCTTCCTTTCCTCCCTCCTTCCCT
CCCTCCCTCCCTCCCTCTCCCCCTAGGGTGGCAAAGGATCTCGCTCCCCC
CTCGGCATCACCTGCGGTTCTCAAGCTTACTGGCTGGTCATGCTGGCGAC
CTTGCCCTGGGTGGGAGTTTTCCTTTACAAATTCCGACAATTTATCATGG
AGGACTGCGCTGCTAAG GTAGGGAAGGAGGAAAACGGGGAGGCGAGGGGG
GGAAGAGCCAAAAGATGGGAAGCAGTCGATTTCCTCATCCCCCTCCCCCC
TCCCTCCCTCTCTCCCTTCTTGAAGCTACGGTCAGGCTACAATATCCACA
TGCCGGGCGAGGTCTGGTGGACGCGGACAAAGGCCGTGCAGGCCCATGGG
CTCGGCGCCACCGCG GTAGGAAAAACAGAAAAAGCGATGGAGGGAGGGGA
GAGGGGATGGGCGGAAAGAGGAAGCGAAGGGCGGGAGGGAGAGACTTAAA
GTCATTGATAGAGAGAGCCTCGGTCCTTGTGTCTTGTTCCATTTTCATAC
TGAAACCTTGACGAAATCACAGGGCCTGGCCGCTGGTGTCGTCGGTATAG
GCGACATTATGATCGAAG GTACGGAGGATTCCTCCCCTCCTCCTGCCTCC
TCCTTCCTCCCTCCACCTGAAACCCTTCCCTTCCTTTCTCTTTTTTTCTT
TTCACAGACATTCTCCTGCTCGAAATGGGCGTCCTACCTGCCGTGGCCGC
CGCTTCAGCCGCTGTTTTGATCCTGTACACTGCTGCTGCTGCTGCTGCTG
CTTTCTGTGTCTTTGGACAGCTGTCAAGAGATTACGGCGCCCTTTTCTTT
GTGTGGGGATTGGGATGTACGCTAGTGGGGCGCATGGTCGTCAGTCGTAT
GGTAAGGCAGCATAACAGGGAGAGTTTAATTCTCTTGTCGATTGGGGCCG
CTACTTTGTTGAGTGTGATTATGATGGGTCGGGAGGGGATTCGAGAATAC
ACCCGAGATACGGCTAAGGCTGTCAGGATGTCGTCTATGTGTGAATAA back to top Coding sequence (CDS) from alignment at chr24:668577..672985+
>NO24G02440.1 ID=NO24G02440.1|Name=NO24G02440.1|organism=Nannochloropsis oceanica|type=CDS|length=2151bp|location=Sequence derived from alignment at chr24:668577..672985+ (Nannochloropsis oceanica) back to top