NO24G02420.4, NO24G02420.4 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G02420.4
Unique NameNO24G02420.4
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2450
Alignment locationchr24:661469..664753 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:661469..664753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G02420.4 vs.
Match: XP_008872693.1 (hypothetical protein H310_08634 [Aphanomyces invadans]; ETV98496.1 hypothetical protein H310_08634 [Aphanomyces invadans])

HSP 1 Score: 287.7 bits (735), Expect = 4.900e-74
Identity = 165/340 (48.53%), Postives = 219/340 (64.41%), Query Frame = 0 
Query:   15 FVVGAASASSLLYIFLHRQRQQRLRQSQQYQPQQGQASSSPITSSTSLPASLEQELFARVLSFFGEASFPPIPQAFIVVVGLGGVGSHAAQMLVRSGVKRLRVIDFDQVTLSSLNRHAVARLADVGLPKADVLKTRLLELGLPGLQIDACRALMNKESAPVLLGGWEGGKEGQASLPTYVLDCIDDVQTKAELLSYCKDQNLQVICSLGAGLKADPTRLCVGELDNTKNEPLAIKLRYLLRKQGRTSCGITAVYSHEKPRGSLLPLTHEQEAAPSDFGVLENMRLRVLPVLGTMPALFGQAMAAYVLCEVAGQPIQPVAVEGLSRNVKHRLLQHLRNRER 355
            F +G  +A+   Y+   +Q ++  +      P    ++  P+ ++TS  A+L  E F+R+ SFFGE  F  I  AF++V+GLGGVGSHAA ML RSGV+ LR+IDFD VTLSSLNRHAVA  ADVGL KA VLK RLLE+ +P   I+A   +     A  LL G           PTYVLDCIDDV TK  LL+    ++L+VI +  AG KADPTR+ +G L ++  + LA K+RY L+K+G  +  IT VYS EK R  LLPL  +Q   P+ FG +EN R+RV+PVLGTMPA+FGQ+MAA+VL E+AG PI P  V  L R+ +++  Q L+ RE+
Sbjct:   16 FTLGVVTAAVGQYLLAQQQPRRAAK------PLATPSAPQPV-AATSADAALSTEQFSRICSFFGEEGFEKIQNAFVIVIGLGGVGSHAAHMLARSGVRHLRLIDFDNVTLSSLNRHAVATRADVGLSKAQVLKQRLLEI-VPQANIEAVPVMFEDAVADELLAG----------NPTYVLDCIDDVTTKVALLTAASAKSLKVITATSAGAKADPTRIHIGTLHDSVRDNLATKIRYFLKKKGVDASTITTVYSSEKSRCKLLPLDSDQVDNPNQFGNVENFRIRVIPVLGTMPAMFGQSMAAFVLTEIAGSPITPENVAKLGRDQRNKYYQRLQQREK 337
The following BLAST results are available for this feature:
BLAST of NO24G02420.4 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800200022002400Expect = 4.90e-74 / Id = 48.53SequenceXP_008872693.1
Match NameE-valueIdentityDescription
XP_008872693.14.900e-7448.53hypothetical protein H310_08634 [Aphanomyces invad... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G02420NO24G02420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G02420.4NO24G02420.4-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G02420.4.cds1NO24G02420.4.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02420.4.cds2NO24G02420.4.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02420.4.cds3NO24G02420.4.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02420.4.cds4NO24G02420.4.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02420.4.cds5NO24G02420.4.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G02420.4.cds6NO24G02420.4.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G02420.4 ID=NO24G02420.4|Name=NO24G02420.4|organism=Nannochloropsis oceanica|type=mRNA|length=2450bp
GCAGTGCAGGTGTGGTGCGCTGTTAAAATGAGAAAGGTCAGGGGGAAGGG
GAAAGAGAGGGATGTCAGCTTTGCGCACAGCAGTAGGGCACAGGCGGAAA
AGCTGAGCAGTACTCTTGTCTACTGCAGCCAAGGCTCCATATGGCCGAGG
CTCATACCTGCCGGGGGTGGAAGCTGGGAGAGTCGAGGGAGAGGGAGGGA
AAGGGGGAGGTTACAATGGTCCGCCCTTGTGGACACGCAGCACGCAGGTG
CGTGCATATCGCTGCGTAAGAGACTGTGTTCTTGTCCTTGTTGAATCTAA
GGACGGCAACAGAAGGACAACCAAGTCGCCTGAAGAGGAAGTAACGGCGA
AAGGTGCAAACCACCAGCGTTTTTTGTCCATCTCGACTGCCGCCAGCCCT
CACACACCTTCCTCTACTGCATAGACTACAGGCATTCCCGACTACCATGG
CGTCATCGAGCAGCACTCAAAGGTCTTTAATTCTGTCCTTTGTCGTCGGT
GCCGCATCTGCCTCCTCTCTGCTCTACATCTTCCTCCACCGGCAACGGCA
GCAGCGACTGCGGCAGAGCCAGCAATACCAGCCGCAGCAGGGTCAGGCCT
CTTCCTCTCCCATCACTTCCTCCACCTCCTTACCGGCTTCTCTGGAACAA
GAGCTCTTTGCCCGTGTCCTATCTTTTTTCGGGGAGGCATCATTCCCTCC
GATTCCGCAGGCATTCATTGTAGTAGTGGGGTTGGGAGGGGTAGGGTCTC
ACGCGGCCCAGATGCTCGTGAGAAGCGGTGTGAAGCGGCTTCGCGTCATA
GACTTTGACCAGGTAACCCTGTCCTCCCTCAACCGCCACGCCGTCGCCCG
CCTCGCAGATGTGGGCCTACCCAAGGCCGATGTCCTGAAGACACGTCTGC
TGGAGCTGGGGCTACCAGGTCTGCAGATCGACGCATGCCGAGCCTTGATG
AACAAGGAGAGTGCACCAGTGCTGTTGGGAGGGTGGGAAGGAGGAAAGGA
AGGGCAAGCATCCCTGCCTACCTATGTCCTCGATTGCATCGATGACGTCC
AAACTAAGGCGGAGCTCCTCAGCTACTGCAAAGACCAAAATCTACAAGTA
ATTTGCTCCTTGGGTGCGGGCCTCAAGGCGGACCCGACCCGACTTTGCGT
CGGTGAACTAGACAACACCAAAAATGAGCCTCTGGCCATCAAGCTTCGGT
ACCTCCTCCGCAAGCAAGGCAGAACGAGCTGTGGCATCACCGCTGTCTAC
TCCCACGAGAAGCCTCGAGGCTCTCTCCTCCCTCTCACACACGAACAAGA
GGCTGCTCCCTCGGACTTCGGCGTCCTGGAAAATATGCGTCTGCGCGTAC
TGCCGGTCCTAGGAACCATGCCAGCCCTCTTCGGTCAGGCCATGGCGGCC
TATGTCTTGTGTGAAGTCGCCGGACAGCCCATCCAACCAGTCGCCGTGGA
AGGACTCTCCCGGAATGTGAAGCATCGTCTCCTTCAGCACCTCCGGAATC
GAGAGCGAGTTACCTTTCAGAACCACGACATGTGAGAAAGAGACAAAAGG
AGGGAGGGGACAAGGGATGGAGGGTGGAGATGAAGGAGGACAAGAATGTG
TAGCTCTTCATGAATCAACCACCTCAATACCGATTTTGCGCAGATTTTGG
AAGCCAAACAAACGAATTCATCCTCCCACTCGCTTATTTCCTCCCTACTA
ACTGTTTTTCTCCTGTAGTAACGACATCTCCTACGAGGATGTTGAAGAAG
TATGCCAAGAAGTATGGCGCTGTCGCTGCGTGATGACAGGCGCAAGGCTG
GGAACAGGAAAAGTATTCGCACTCACTCGGTACAGTATTCTGTTCCCCGT
TGCCTTTCTCCCTTCCTTTCCTCCATATCGCGAATCATGAACTCAAACGC
ACCACCCTCCATTCTCCACTTTCTTTCTTCTCTTAGCTGGGACAAAAAGA
GGCCTCCTTTCATTGAAAACCTCGTTCTTTTTTCGTCCGCCGCGCTAGCG
GACAAATTTGATCTGGAAGGGCCCGCAATGCTGCCTGAGGACAGGAGAAA
GAAGGTGGAAGAACGACTGAGGCACTTATTTTGACAAAAAGGTAGCATGA
GGGTATGGAATGAGAACCTACGGGTTTAATGGAGAATTTCAGGGTTATGT
AAACATCAATCTCAAATAAATACATTTACAAGAAAAAAATAAACGACCGA
ACGAGATTGCTGCTGCTTGCCGCGTTAGATTGATGACATCTGGCGCAGGG
TTATCCTATGTGCTGGTAGCGCAGAATGGGAAGATTCTCGGAAGAATCGT
CTCAGAGACGCCTCAAACGAGTGCTTGGAAGTGGGTACACGTTCCTAAAG
AACATTTTTTCCCGGAGCGTAATTGAGGGGTTGTACTGCCTGAGAAATAA
TAAGTAACGGCTGTTTTAGAGTCGCATTAGCAAACGTCCTCATTATTCCT
back to top

protein sequence of NO24G02420.4

>NO24G02420.4-protein ID=NO24G02420.4-protein|Name=NO24G02420.4|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MASSSSTQRSLILSFVVGAASASSLLYIFLHRQRQQRLRQSQQYQPQQGQ
ASSSPITSSTSLPASLEQELFARVLSFFGEASFPPIPQAFIVVVGLGGVG
SHAAQMLVRSGVKRLRVIDFDQVTLSSLNRHAVARLADVGLPKADVLKTR
LLELGLPGLQIDACRALMNKESAPVLLGGWEGGKEGQASLPTYVLDCIDD
VQTKAELLSYCKDQNLQVICSLGAGLKADPTRLCVGELDNTKNEPLAIKL
RYLLRKQGRTSCGITAVYSHEKPRGSLLPLTHEQEAAPSDFGVLENMRLR
VLPVLGTMPALFGQAMAAYVLCEVAGQPIQPVAVEGLSRNVKHRLLQHLR
NRERVTFQNHDM*
back to top

mRNA from alignment at chr24:661469..664753+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02420.4 ID=NO24G02420.4|Name=NO24G02420.4|organism=Nannochloropsis oceanica|type=mRNA|length=3285bp|location=Sequence derived from alignment at chr24:661469..664753+ (Nannochloropsis oceanica)
GCAGTGCAGGTGTGGTGCGCTGTTAAAATGAGAAAGGTCAGGGGGAAGGG
GAAAGAGAGGGATGTCAGCTTTGCGCACAGCAGTAGGGCACAGGCGGAAA
AGCTGAGCAGTACTCTTGTCTACTGCAGCCAAGGCTCCATATGGCCGAGG
CTCATACCTGCCGGGGGTGGAAGCTGGGAGAGTCGAGGGAGAGGGAGGGA
AAGGGGGAGGTTACAATGGTCCGCCCTTGTGGACACGCAGCACGCAGGTG
CGTGCATATCGCTGCGTAAGAGACTGTGTTCTTGTCCTTGTTGAATCTAA
GGACGGCAACAGAAGGACAACCAAGTCGCCTGAAGAGGAAGTAACGGCGA
AAGGTGCAAACCACCAGCGTTTTTTGTCCATCTCGACTGCCGCCAGCCCT
CACACACCTTCCTCTACTGCATAGACTACAGGCATTCCCGACTACCATGG
CGTCATCGAGCAGCACTCAAAGGTCTTTAATTCTGTCCTTTGTCGTCGGT
GCCGCATCTGCCTCCTCTCTGCTCTACATCTTCCTCCACCGGCAACGGCA
GCAGCGACTGCGGCAGAGCCAGCAATACCAGCCGCAGCAGGGTCAGGCCT
CTTCCTCTCCCATCACTTCCTCCACCTCCTTACCGGCTTCTCTGGAACAA
GAGCTCTTTGCCCGTGTCCTATCTTTTTTCGGGGAGGCATCATTCCCTCC
GATTCCGCAGGCATTCATTGTAGTAGTGGGGTTGGGAGGGGTAGGGTCTC
ACGCGGCCCAGATGCTCGTGAGAAGCGGTGTGAAGCGGCTTCGCGTCATA
GACTTTGACCAGGTAAATAGAAATAAATTGAAGAAAGAGTATGGGAAATT
ACATATGCATCCTCACTGTATTTTCCCTGGCTCCCTCCCTCTCCAAGGTA
ACCCTGTCCTCCCTCAACCGCCACGCCGTCGCCCGCCTCGCAGATGTGGG
CCTACCCAAGGCCGATGTCCTGAAGACACGTCTGCTGGAGCTGGGGCTAC
CAGGTCTGCAGATCGACGCATGCCGAGCCTTGATGAACAAGGAGAGTGCA
CCAGTGCTGTTGGGAGGGTGGGAAGGAGGAAAGGAAGGGCAAGCATCCCT
GCCTACCTATGTCCTCGATTGCATCGATGACGTCCAAACTAAGGCGGAGC
TCCTCAGCTACTGCAAAGACCAAAATCTACAAGTAATTTGCTCCTTGGGT
GCGGGCCTCAAGGCGGACCCGACCCGACTTTGCGTCGGGTGAGTGATTGT
GGTTGGACCAAATGTTGTGCTGGATCTGGTTCGGTTATCGTTCCCGGGCA
CAGTTGTGGGGCCTTAGGGGCTAGGAGCTGCGGTCTCATATAGTGTATGC
AGTTGCTTACACTATGGAATCCTTCTTTCCTTGTCCCACGACATGGAGGC
GGGGACACCGGTACCGACAATTCTCTGTTAACCTTCTAATCCTCCCTCCC
TCCCTTCCTTCCTTGCACTTTTCCTTCCGACTATTTACAGTGAACTAGAC
AACACCAAAAATGAGCCTCTGGCCATCAAGCTTCGGTACCTCCTCCGCAA
GCAAGGCAGAACGAGCTGTGGTAGGTCCCTCCCTCCCTCCTTCCCTCCCT
CTTTCCTTCTTGTCATCTACTCTCTCAATCAACCCCGCCTCCCTCTCTTC
CTCCTTCCCCCTCCCCCTCAGGCATCACCGCTGTCTACTCCCACGAGAAG
CCTCGAGGCTCTCTCCTCCCTCTCACACACGAACAAGAGGCTGCTCCCTC
GGACTTCGGCGTCCTGGAAAATATGCGTCTGCGCGTACTGCCGGTCCTAG
GTGCGTCCCCTGGTTCCCTCCTTTCCTCCCCTCCTGCCCTCTGACCTACT
AGCAAGAGTCGCCTTCTCTGGGAGATATCTTCGAGAAGAATCTTCTGCTC
CCACGCACACGTTTTGTTTTTCCGGGGTACGCCCCCTCCTTCCCTCCCAC
CTCCATTTTTTTTTCTTTCCTCATTCCGATCCTCTTTTTCTTTCCTCTTT
TGCTCCCGAAGGAACCATGCCAGCCCTCTTCGGTCAGGCCATGGCGGCCT
ATGTCTTGTGTGAAGTCGCCGGACAGCCCATCCAACCAGTCGCCGTGGTA
CGTCCTCTATCTTTTCCTTCCTCCCTTGCTTCCCATCACATCAACCATTT
CCCTTCCTTCCTTCATTTTTCTCTCTCTCTCTGTCTCCTTCTCTTGCCAT
AAGCATCGGCCTTTTTCGTGACGTTTTAAAACTCACAGTCCCTCGTTCCT
TCCCTCCTCTCTCCCTCCCTTCCTCCTCCGCAGGAAGGACTCTCCCGGAA
TGTGAAGCATCGTCTCCTTCAGCACCTCCGGAATCGAGAGCGAGTTACCT
TTCAGAACCACGACATGTGAGAAAGAGACAAAAGGAGGGAGGGGACAAGG
GATGGAGGGTGGAGATGAAGGAGGACAAGAATGTGTAGCTCTTCATGAAT
CAACCACCTCAATACCGATTTTGCGCAGATTTTGGAAGCCAAACAAACGA
ATTCATCCTCCCACTCGCTTATTTCCTCCCTACTAACTGTTTTTCTCCTG
TAGTAACGACATCTCCTACGAGGATGTTGAAGAAGTATGCCAAGAAGTAT
GGCGCTGTCGCTGCGTGATGACAGGCGCAAGGCTGGGAACAGGAAAAGTA
TTCGCACTCACTCGGTACAGTATTCTGTTCCCCGTTGCCTTTCTCCCTTC
CTTTCCTCCATATCGCGAATCATGAACTCAAACGCACCACCCTCCATTCT
CCACTTTCTTTCTTCTCTTAGCTGGGACAAAAAGAGGCCTCCTTTCATTG
AAAACCTCGTTCTTTTTTCGTCCGCCGCGCTAGCGGACAAATTTGATCTG
GAAGGGCCCGCAATGCTGCCTGAGGACAGGAGAAAGAAGGTGGAAGAACG
ACTGAGGCACTTATTTTGACAAAAAGGTAGCATGAGGGTATGGAATGAGA
ACCTACGGGTTTAATGGAGAATTTCAGGGTTATGTAAACATCAATCTCAA
ATAAATACATTTACAAGAAAAAAATAAACGACCGAACGAGATTGCTGCTG
CTTGCCGCGTTAGATTGATGACATCTGGCGCAGGGTTATCCTATGTGCTG
GTAGCGCAGAATGGGAAGATTCTCGGAAGAATCGTCTCAGAGACGCCTCA
AACGAGTGCTTGGAAGTGGGTACACGTTCCTAAAGAACATTTTTTCCCGG
AGCGTAATTGAGGGGTTGTACTGCCTGAGAAATAATAAGTAACGGCTGTT
TTAGAGTCGCATTAGCAAACGTCCTCATTATTCCT
back to top

Coding sequence (CDS) from alignment at chr24:661469..664753+

>NO24G02420.4 ID=NO24G02420.4|Name=NO24G02420.4|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr24:661469..664753+ (Nannochloropsis oceanica)
ATGGCGTCATCGAGCAGCACTCAAAGGTCTTTAATTCTGTCCTTTGTCGT
CGGTGCCGCATCTGCCTCCTCTCTGCTCTACATCTTCCTCCACCGGCAAC
GGCAGCAGCGACTGCGGCAGAGCCAGCAATACCAGCCGCAGCAGGGTCAG
GCCTCTTCCTCTCCCATCACTTCCTCCACCTCCTTACCGGCTTCTCTGGA
ACAAGAGCTCTTTGCCCGTGTCCTATCTTTTTTCGGGGAGGCATCATTCC
CTCCGATTCCGCAGGCATTCATTGTAGTAGTGGGGTTGGGAGGGGTAGGG
TCTCACGCGGCCCAGATGCTCGTGAGAAGCGGTGTGAAGCGGCTTCGCGT
CATAGACTTTGACCAGGTAACCCTGTCCTCCCTCAACCGCCACGCCGTCG
CCCGCCTCGCAGATGTGGGCCTACCCAAGGCCGATGTCCTGAAGACACGT
CTGCTGGAGCTGGGGCTACCAGGTCTGCAGATCGACGCATGCCGAGCCTT
GATGAACAAGGAGAGTGCACCAGTGCTGTTGGGAGGGTGGGAAGGAGGAA
AGGAAGGGCAAGCATCCCTGCCTACCTATGTCCTCGATTGCATCGATGAC
GTCCAAACTAAGGCGGAGCTCCTCAGCTACTGCAAAGACCAAAATCTACA
AGTAATTTGCTCCTTGGGTGCGGGCCTCAAGGCGGACCCGACCCGACTTT
GCGTCGGTGAACTAGACAACACCAAAAATGAGCCTCTGGCCATCAAGCTT
CGGTACCTCCTCCGCAAGCAAGGCAGAACGAGCTGTGGCATCACCGCTGT
CTACTCCCACGAGAAGCCTCGAGGCTCTCTCCTCCCTCTCACACACGAAC
AAGAGGCTGCTCCCTCGGACTTCGGCGTCCTGGAAAATATGCGTCTGCGC
GTACTGCCGGTCCTAGGAACCATGCCAGCCCTCTTCGGTCAGGCCATGGC
GGCCTATGTCTTGTGTGAAGTCGCCGGACAGCCCATCCAACCAGTCGCCG
TGGAAGGACTCTCCCGGAATGTGAAGCATCGTCTCCTTCAGCACCTCCGG
AATCGAGAGCGAGTTACCTTTCAGAACCACGACATGTGA
back to top
Synonyms
Publications