Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr24 genome chr24:543124..549425 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G02060.1 vs.
Match: WP_048673544.1 (5-histidylcysteine sulfoxide synthase [Candidatus Competibacter denitrificans])
HSP 1 Score: 296.2 bits (757), Expect = 3.100e-76
Identity = 144/229 (62.88%), Postives = 165/229 (72.05%), Query Frame = 0
Query: 138 WEDNLRAEDAAWLSGSRPLDWWTGSIPLPGHSCPGLLPDGTLTSLPLPRLASSTLTREQLVDYFDNTWALTEVLFAGLQGPEGFYQPPYHGLRHPLIFYYGHPAVLYVNKFRVAGLMDKPINAYFEALFETGVDEMSWDDMTKNSKAWPSVTEVREYRRQVHAAVRKVILTHPEF-STLATKVEDSPFWAVVMGCEHERIHLETSSVLFRELPLSRLAPPAQWPQPHPS 366
W NLR E A L G RP WWTG P CPG PDGTLTSLPLP LAS +R+Q++DYFDNTW LTE+L AGL G E F++PPYH LRHP+IFYYGHP VLY+NK R+AGL++KP+N YFE LFETGVDEM WDDM+KN WPS+ EV YR+QV+ VR VI THP+ S A P WA+ MG EHERIHLETSSVL RELPL + PA WP+ HPS
Sbjct: 17 WHKNLRHELGAELIGPRPTWWWTGQ---PPQDCPGRQPDGTLTSLPLPDLASH--SRQQVLDYFDNTWTLTEILLAGLCGEEAFFRPPYHHLRHPMIFYYGHPPVLYINKLRIAGLIEKPLNPYFEQLFETGVDEMRWDDMSKNEMLWPSIQEVHAYRQQVYRTVRGVIETHPDLASGHAPITPQHPLWALFMGFEHERIHLETSSVLIRELPLPFIQRPAAWPKLHPS 240
The following BLAST results are available for this feature:
BLAST of NO24G02060.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2400 Expect = 3.10e-76 / Id = 62.88 Sequence WP_048673544.1
Match Name E-value Identity Description
WP_048673544.1 3.100e-76 62.88 5-histidylcysteine sulfoxide synthase [Candidatus ... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO24G02060.1 ID=NO24G02060.1|Name=NO24G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp back to top protein sequence of NO24G02060.1
>NO24G02060.1-protein ID=NO24G02060.1-protein|Name=NO24G02060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=824bp back to top mRNA from alignment at chr24:543124..549425-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G02060.1 ID=NO24G02060.1|Name=NO24G02060.1|organism=Nannochloropsis oceanica|type=mRNA|length=6302bp|location=Sequence derived from alignment at chr24:543124..549425- (Nannochloropsis oceanica)ATGTCCAGCCCATCGTCCAAGCCCGCAGACCTTGCCGCGCCTTGCGGGCG
TGACCCGCCCTCGTTTGCTTTTCACGCACG GTACGCATGTCCTTTTCTAT
GCTGGCAGCAAATCAAGCGGTGCAAGTTATTAAAACGCTCTTGTCACGAT
GTACTCGCGAGACCATAGATTTGGAAATAGGTGGTGGGTGGAGGAGAGGC
TGTTGTTGACCGTGAGAACCGGCATGCAAACATCAACTCACCTGACGCAC
AAGCAGCACCGCCCCTCAATCTATGTTCTCCCTTTCGTCCATACCAGTCC
CCTAAACAGGCAGTACGACGGGGTGGACGTCGTATACGCCATGATTCGTA
TTGCGACATGTCCCAAGAGGTTTTGCGCGGCCAATAAGCACCGGCAAAAA
TCGTCCATGAAAAGCTTTGCCGCCTCCTGCGTCATGTCCCGCCACTCCTC
CTTCACCTCCTCCTCCTCCTCCTCCTCCTCCATCCCCTTCTCTGCTGTCA
CGAGAAGGACCAAGCCGAT GTTCACCTATCACATCTCTCGCTCCTCTTCC
TTCCACTCCACTGCCTTCCGCTCCAACCCCTCCTTTACGCCTCCTTCTAA
AAAGGCTGCCGTCTCCCTCGCAGATACCCTCGAGCCCATCTGCTCCTCCC
CTCCCCCTCACTGACATCTCCCCACCATTCCTCCCTACCCCCTTCGTCCC
TTCCGTCCTATCACCATCCAAACGTGACCTCGTGGGAAGATAACTTGCGA
GCGGAGGATGCGGCATGGCTTTCGGGATCCCGGCCTCTGGATTGGTGGAC
TG GTATGTGCAAGCAGGGGAGAGAGGGAGGGAAAGGAGGAGGGAGAGAGG
GAGGGAAGGGAGGAAGGGAGGGAGGAAGGACAAGAGATTGAAAGAGAATC
CAAAAACTCAAATATCACGCCGACACTATTTGCCATTTAATACACGTGTT
CCAATACCTCTTCCCTCCACTCTTTCCCTTTCTCTCTCCTGTAGGTTCCA
TCCCCTTACCCGGACACAGTTGCCCCGGTCTGCTCCCCGACGGAACGCTC
ACTTCCCTCCCTCTTCCCCGTCTTGCCTCCTCAACCTTGACGAGGGAGCA
GCTGGTGGATTATTTCGACAACACATGGGCCCTGACGGAGGTGTTGTTCG
CGGGGTTGCAGGGACCGGAAGGCTTCTACCAACCGCCGTACCACGGCTTG
AGGCACCCTCT GTGAGTGATGGGGAGGGACGGACGGGAGAGTGGGAGGGA
GAGAAGAAAACAGGAAGGAAAGGATAAAAAGGGGGAGAGAATATTCCATC
GCTGTCAACATTCCACATGGTTCTCACGTCCTCCTCCCCTCCTTCCCTCA
TTCCCTCCTTGCCTCCCTCCCTCCCTCCTTCCATTTGTCGTCACCTCAGG
ATATTTTACTACGGCCATCCGGCCGTGCTGTACGTCAATAAGTTCCGCGT
GGCTGGCTTGATGGATAAGCCTATCAATGCCTACTTCGAGGCTCTGTTTG
AAACGGGCGTGGACGAG GTAGGGAGGGAGGGAGGGAGGGAGGAAAAGCCC
ATGTTGCACTTAATTTGCCTTTGGGCTCACCAGTGTGGTTAAACCCTCCC
TTTCCCTTTCTCCTTCCCTCCCTTCCTCCCTCTCTTTCCCATTAGATGTC
GTGGGACGACATGACCAAGAACAGCAAAGCATGGCCGTCGGTGACTGAGG
TGCGGGAATACCGACGTCAGGTGCATGCGGCCGTGCGGAAAGTGATTTTG
ACACACCCGGAATTCAGCACGCTGGCCACGAAA GTGAGGGAGGGAGGGAG
GCAGGGGTGGAGGGGAAGAGGGAAGGAGGGGAGGGAGGGGAGGTAGAAAA
ATGTAGAGGAGGAAATCGTCGTTTTATGCTGCGTCCCTCACCCCCTGCCC
TCCCTCCGCCCCTCCGCCCTCCCTCCCTCCCTCTCTCACCTCCTTCTCTC
CCTCCCCAGAGATTGTCGGTTTATGCTGTGTCTCTCACCCCCTGCCCTCC
CTCCCCCCTCCGTCCCTCCCTCTCTGACCTCCCTCCCTCCCCTTAGGTCG
AGGACTCCCCGTTTTGGGCTGTGGTGATGGGCTGTGAGCATGAGAGGATC
CACTTGGAGACGTCCTCGGTGCTCTTCCGCGAGCTCCCGCTGTCCCGCCT
TGCGCCCCCTGCCCAGTGGCCTCAG GTAGGTACGTAGGTAGCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCACGTGTCCCTGTTTCCAA
GCTCCGGAAAAACACCGAAAAGGTGAACATTAAACACATACCCTCCCCCC
CCACTCCCTCCCTCCCCTCCCTCCCTCCCTCCCTCCTTCCCCCCTCAGCC
CCACCCCTCCACCTTCTCTCGCTCCTCCCCCCTCTCCTCCCCCTGCCCAC
GACCGACTTCCCAGCGAATCCCTTCCTCCCCCTCCCTGCCCAACGC GTGC
GTCTGGGGAAACACAAGCAAGGGCAGGGAGAGAGGGAGGGAGAGAGGGGG
GAGACGCCGGTGGTTTCGGGTGGGACAACGCCTATGGGCAGAAGGAGATG
GAAGTCAAGGCCTGTGAGGTGACGCGGCAAAAAATCTCCAACGGGGAATT
TTATGCCTTCGTGAAGGGAGGAGGCTACTTCGATCCGAGCCACTGGAGCC
AGGAGGGATG GTGAGGAGGGAGGAAGGAAGGGAGGGAGGGAGAAAGAGGA
GAGGCGTCAGTGTCTTAACATCTTCTCCCCCCTCCGAATTTTGCCTTAAT
TTGTCCCTCCCTCCCTCCCTCTCTCCCTCCATCCCTCTCTCCCTCTTTCC
CTTCCTCCCTTCCTCCCTCCGTCCCTTCCTCCCTCAGGAAATGGCGCTGT
TTCCGAAATACGCGTCATCCCACCTTCTGGGTTCCCATCGGCCCCTCTGG
CTTGCAG GTACATGAAGCCCTTCCTCCCTCCCTCCCTTCCTCTCTCCCTC
CCTGTCTCCCTCCCTTCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTCTCG
TTAAGCCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCATCAGGCCTTCCGC
CTTCGGACCGTCTTCGAACAGGTGGACATGCCCTGGTCCTGCCCTGTGGA
GGTTAATTACCACGAGGCATCGGCCTACGCACGGTGGCGCTCTCGACAAG
ATGAAGCCGCCGCAGCCGCAACAGACGCAGCAGGAGGAGGGGGAGGGGAG
GTACAGACTACCCCTTCCTCCCTCCCGTCCTCCCCCCTCCCTACCGGCTG
CTGACGGAGGCCGAGCACCATTGCCTCCGAGCGTCGAGGGACAAGGGCAC
GGGCGAGGGCGGGACGGAGGGCGGGACGGAGATCGAGGACGTGGTCCTTT
CCCATTCGGGGGCGGAGCTGCGGCCCATATTCAATTTGAACCTGGCGTGG
GGCATGGCGAGTCCTGTGGATGCTTACCCCCCAACGGCAAGGGGTTCAGG
GACGTGCGGGGGAATGTGTGGGAATG GTAAGAGGGAGGGAGGGAGGGAGG
GGGGAGGGGGGAGATGGAGGGGAGGGGGGTGGGAGGGGAGGAGTTGATTG
CCTGGACGGGGGAACGTAGGGGGTTGGTGAGAGGGAGGGAAGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGAAAGGGAGGGAGGGAGGGAGGGATT
CACATCTACTGCCCAGACGTCCTTGTCTTTGATCTCAGTAAAATAAATCT
CTCCCTTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTTCCTCAGGTGT
GAAGATCATTTTTCCCCTCTTCCAGGATTTGAGCCTCATCCGCACTACAT
GGATTTCTCCCTTCCCTGCTTCGATGGGGAGCATCAGATGATAATG GTGC
GCCCTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCACTTTCGATCC
CCTCCCTTCCTTTCCTCCTCTCCTTCCTGCATCGCTTCCTGGGATTGGAT
TCTCTCGCTTTCATGTTTCAAATTATATTCTTCCCATCTCATCATATTTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TACCTCCCTCCTTCTCTCCCTCAGGGTGGCTCGTTCGCTTCTACGGGAGA
AGAAGCTTCTCTGCATGCCCGCTTCCATTTCCGGCCCCATTTTTTCCAGC
ACGCGGGCTTCCGGCTTGTCAGGCCCAATAAGGAG GTAGGTAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGGAGGAGGGAGGGAGGGAAGGAGGGTAGACAGGGAGGTGCTGCTGG
GTGGTAAAAGGAGAGGAAGAGAAAGAGGGAGGGAGAAAGGGAGGGAAGGA
GGGAGGGAGGGAGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
GGGGCAAGGGTGGTGTTCGCTTTTTTCCCTCATTACGCCCTTGGCTTTCG
TCTTCCCTTCCTCTTGACAGGGATAGACATTTAGGGGAGGGGGAAGGGAG
GAAGGGAGGGAGGGAGGAAGGGAGGGCTCCTGTTTATAAGGGATAAGCAG
GACGGACTGGCAGTCTCAAGGAAGAAGGGAGGAAGGGAGGGAAGGAAGGA
GGGAGGGAAGGAGGGACTCCCTCGTTGTCATGAGGGGTCGAATCGGGCCT
CATGCTGCTGCTGCTGCTGCTGCTGCTGCCCTGGTTGTAATTTTGGCTAT
GATTGTCGCTGCTGCTGCTGCTGCTGTAGCAAGAAGCTGCGAAGACCTCT
CTTCAACTGCCTGCATAATCACTCACCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCAGGACCCGTCCCTCCTCACCTCTTGCATGGACAACCAAGGCC
CGTAC GTAGGCGAGAACCCCTACCGGTCCTCCCTCCCTTCCTCCCCCCTC
CCTCCTCCTCTTCCTCCCCCTCCACCGCTGCTGCCGCCGTTGCCCCCTGC
CCTTCCTCCCTCCCTTCTCAAGCACAATCTGACGCCTCCTATCGGGCCAA
TACGCAGCAGTACGACCAGGACACTGAGTGGCTTCAACGATACCTGCACC
TCCACTACTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTCCTCCTCTCTC
CCGTCCTCCTTCCTAGATTTCCCTGTGAGATGCGCGACACTCCTGGCCGA
AGCCGCCGCTGCCACCGGCGGGAAGACAAGGAAGGCCTTAGATTTGG GTA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAA
GGAAGGAAGGAGGGAGGGAAGGAGGGAAGCAGAGAGGGAAGGTGGAGCAA
CGCACTTATTTCCTCGCCTGCTGTCCATCAACGCCTCAACATTTTCTGTA
TTTCCATACCCTGGGACTTTATCTTCTCCCTCCCTCCCTCCCTCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCAGGCTGTGCGGTGGG
TGGTTCCTCCTTCGCGTTGGCCAGAACGTACGATCACGTGGACGGCCTCG
AGCTCTCGCCTGCCTTCGTCAAC GTATGTCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTTCTTCATGCTGTCTGGCTCCAGAGACCACCCG
AAGAAACCCTGACCGCCCTCCCTCCTACCTCTCCATTTTTTCTTCTCCCG
CCCCTGTACTGTTTCGTCCGGCCTCTCTGACCATCTTTCCCTCCCTCCCT
CCCTCCCTCCTTCCCTGCAGGCCGCCCAGCAGCTCAAGGAGCAGGGAGAA
ATGCC GTATGAGTTGAAGAAGGAGGGAGAGACCTTCCTCTCTTGCGTGGC
GCGTGTACCCGGGGGGTCGATAGGCAGCGGGTCTCGTTCAGTGTGGGCGA
TGCCCTGGCTTTACCTGCAGATATGAAAG GTGAGGAGGGCAGGGAAAGGA
GGGGAGGGAAAGGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCACAAATCCAGGGC
AACTGTGTCTGAAGGGAGGAATGAAGGGAGGAAAGAAAGATGGATGTCGT
CCTACCATCGTCTCAGGAGATGCAAGCTCACGTCCCTCCCTCTCTCCCTC
CCTCCCTCCCTCCCTCCTTCCCTCCCTTGATAGGCACATACGACGCCGTT
CTTCTCGCTAATGTTTTATGTCGTCTCCCAAACCCTCGCGGCGCCCTTCA
CCTGATTGCAGGGAGGGGGGAAGGAGGGAGGGAGGGAGGGAGGGAGTGCT
GA back to top Coding sequence (CDS) from alignment at chr24:543124..549425-
>NO24G02060.1 ID=NO24G02060.1|Name=NO24G02060.1|organism=Nannochloropsis oceanica|type=CDS|length=2472bp|location=Sequence derived from alignment at chr24:543124..549425- (Nannochloropsis oceanica) back to top