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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr24 | genome | chr24:529492..533596 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G02010.1 vs.
Match: EWM24413.1 (hypothetical protein Naga_101484g2 [Nannochloropsis gaditana]) HSP 1 Score: 195.7 bits (496), Expect = 4.100e-46 Identity = 118/172 (68.60%), Postives = 136/172 (79.07%), Query Frame = 0
Query: 1 MDKAGG-DSKLVLGLAIGSAYTRSATATAACFPKEGGREGEKDSGFILNRPEIVVNADGDRGTATLVALRKEEQDGGGKQKEGEWLVGAAAKTAMGGRYASQVQSWGGMTILQALLGEKKEDE-EDEEEEEEEVVDEEEE-GREEKVGMEEVCSQLLQHVIEQAENSSGECP 170
MDK+GG ++KLV+GLAIGSA+TR+ATA +C G G+K S +L RPEIVVNADGDR TLVALRKEE+ G KEGEWLVG+AAKTAMGGRY +QVQSW G+ ILQ+ +GEK+E+E EDEEEEEEE +EEEE RE KVGMEEVC QLLQHVIEQAEN SG P
Sbjct: 1 MDKSGGGEAKLVMGLAIGSAFTRAATALISCPTASGAGMGDKGSNLVLMRPEIVVNADGDRAIPTLVALRKEEEGG----KEGEWLVGSAAKTAMGGRYNAQVQSWQGVKILQSFMGEKEEEEVEDEEEEEEEEEEEEEERERERKVGMEEVCGQLLQHVIEQAENFSGVRP 168
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G02010.1 ID=NO24G02010.1|Name=NO24G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp ATGGATAAAGCCGGAGGAGACAGCAAGCTGGTCTTGGGACTGGCCATTGG CAGTGCGTACACCCGATCTGCTACCGCGACAGCCGCGTGCTTTCCCAAGG AAGGCGGGCGGGAAGGGGAAAAGGATAGCGGATTTATCTTGAACCGTCCA GAGATCGTGGTGAATGCGGACGGGGACCGCGGGACGGCCACGCTGGTGGC GCTGCGGAAGGAGGAGCAGGATGGTGGGGGGAAGCAGAAGGAGGGAGAGT GGTTGGTGGGGGCAGCGGCCAAGACGGCCATGGGCGGGCGCTACGCATCA CAAGTGCAATCTTGGGGAGGTATGACAATCCTACAAGCTTTGCTTGGGGA GAAGAAGGAGGACGAGGAGGATGAGGAAGAGGAGGAGGAAGAGGTGGTGG ACGAGGAGGAGGAAGGGAGGGAGGAGAAGGTGGGCATGGAGGAGGTGTGC AGCCAGTTACTGCAGCATGTAATTGAGCAGGCGGAGAACTCCAGTGGAGA GTGCCCTTCAGAATGTGTCTTGGCTATACCCTCTTGGTGCACGGAAGAGC ACCGTGGCGCCGCCATCCACGCCCTGAACATGGCCGGGCTGTCTGTCTTG GGCGTCATCCGCGAGCCCCTGGCCACCCTCCTCGCCTTCCGGCAGAACGA GGGGGAGAGAGGATGCGCAGGGCTTTTACCAATTACTCCATTCCTCCTCC TCCCCCCTTCCTCCCTCCCTCCTTCCACCCCTGCCCGGGGCGAGGCCTTT GTGGACCGACTCGTCTCCTTGTGCTGCGCGGATTTTCGGAAAAAGGCGGG CTGTGATGCCACAGAGAGCAAGAGAGCGATTGCCAAGCTGAAGAAAGAGT GTGAAAACGCCCTAAAAACTCTATCTACTTCGACCACGGTGGACATTGAA ATCGACTCCCTCTACGAGGGCTTCGACCTTCGCACCCGCATTACCCGTGC GCGTTTCGAGAGTGAAATTTTTGACATTCTCAAGGCCTGCATCTCCGCTG TAGAAGCCGCCCTTGCTGCAGCGGGCGTGGCAAAAGAAGACGTAGGTTTG CTTCTGCTCGCTGGCGGCGCTTCCCGCGTTCCCAAACTCCAGCAATGGCT TCAAGCCTCCTTCCTCTCTCCCGCGGGCAGCACGCGCATCAAATCTGTGG ACACGAACCCAGAGGAGGGGGTGGCCCTGGGAGCCGCACTCCAGGCCCAG CTTCTCTCCCAAGCCGCCGCCACCGCCTCCTCCTCCTCCTCTTCCGCAGG AGGCAGCGGCGACGCTCACCCCTTCACTCACAGCCTCACTACCTCCCCTC TCTCCTTCGGCCTACTGGTCACCGACCTCCCCACAGAGGAGGGAGGGAAG GAGGGAGGGATGACGACGGCGTTTTTCAAGTCCTTCTTGAAGCACGCGTC GATTGCCTCCTCGGCGAAATCAAAAATAGGGGACAGGCAACCGTTCTTCC TGATCCATCAAGGGGAGTTCCTCCCCGCCTCCCAGCGTGTTCGTGTCAAA AAAAGCGCCAACGACCAGGCCGACATTTCTCTGCACGTCGTGGCTGCCGG GTCGGAGGGACCGGTTGAGGAAGGGGGGGAGGAAAGTGTCTTGACGCTGG CGGAGATTACGTACAGAGCTCCAGAGGGAGATCAAACAGAGGAGTGGGAT CTCACCATGACCCTGGCCGCCGACGGCGTGCTGCGTGTCCGACTACAAGA GAAGGACGGTGGGCAGGTCCTAAGGGACGTAGTAATTCGCGCCAAAAAAG AAACTCAAAATTAA back to topprotein sequence of NO24G02010.1 >NO24G02010.1-protein ID=NO24G02010.1-protein|Name=NO24G02010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp MDKAGGDSKLVLGLAIGSAYTRSATATAACFPKEGGREGEKDSGFILNRP EIVVNADGDRGTATLVALRKEEQDGGGKQKEGEWLVGAAAKTAMGGRYAS QVQSWGGMTILQALLGEKKEDEEDEEEEEEEVVDEEEEGREEKVGMEEVC SQLLQHVIEQAENSSGECPSECVLAIPSWCTEEHRGAAIHALNMAGLSVL GVIREPLATLLAFRQNEGERGCAGLLPITPFLLLPPSSLPPSTPARGEAF VDRLVSLCCADFRKKAGCDATESKRAIAKLKKECENALKTLSTSTTVDIE IDSLYEGFDLRTRITRARFESEIFDILKACISAVEAALAAAGVAKEDVGL LLLAGGASRVPKLQQWLQASFLSPAGSTRIKSVDTNPEEGVALGAALQAQ LLSQAAATASSSSSSAGGSGDAHPFTHSLTTSPLSFGLLVTDLPTEEGGK EGGMTTAFFKSFLKHASIASSAKSKIGDRQPFFLIHQGEFLPASQRVRVK KSANDQADISLHVVAAGSEGPVEEGGEESVLTLAEITYRAPEGDQTEEWD LTMTLAADGVLRVRLQEKDGGQVLRDVVIRAKKETQN* back to topmRNA from alignment at chr24:529492..533596+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G02010.1 ID=NO24G02010.1|Name=NO24G02010.1|organism=Nannochloropsis oceanica|type=mRNA|length=4105bp|location=Sequence derived from alignment at chr24:529492..533596+ (Nannochloropsis oceanica) ATGGATAAAGCCGGAGGAGACAGCAAGCTGGTCTTGGGACTGGCCATTGG
CAGTGCGTACACCCGATCTGCTACCGCGACAGCCGCGTGCTTTCCCAAGG
AAGGCGGGCGGGAAGGGGAAAAGGATAGCGGATTTATCTTGAACCGTCCA
GAGATCGTGGTGAATGCGGACGGGGACCGCGGGACGGCCACGCTGGTGGC
GCTGCGGAAGGAGGAGCAGGATGGTGGGGGGAAGCAGAAGGAGGGAGAGT
GGTTGGTGGGGGTAAGTGTTTGGGTATTGGGTTCAAAAAAAGGAGGGAAA
GAAAGACGGGCGGATTGATGTAAGTAGCGTGCCTGCGGCATGAAAAATAA
CGCGCGCGTGACAATAGATTCAGTCAACCTCCCACCCTTTCTTTCCACTA
ACATCCTTCTTTCCCTCCCTCCCTCCCTTCCTCCCTCATCACAGGCAGCG
GCCAAGACGGCCATGGGCGGGCGCTACGCATCACAAGTGCAATCTTGGGG
AGGTATGACAATCCTACAAGCTTTGCTTGGGGAGAAGAAGGAGGACGAGG
AGGATGAGGAAGAGGAGGAGGAAGAGGTGGTGGACGAGGAGGAGGAAGGG
AGGGAGGAGAAGGTGGGCATGGAGGAGGTGTGCAGCCAGTTACTGCAGCA
TGTAATTGAGCAGGCGGAGAACTCCAGTGGAGTACGTAAAAAGAACGGGA
AGGGAGGGGGGGAGGGAGGGAGGGAGAGAAAGAAGGAAGTAATCCTGACA
GTCCTTGCTGTCCGCTCACTTCCCTCGCTTCCTCCCCCTCCGTCCCTCCC
TTCCTCCTCCTTTCTTCAGGAGTGCCCTTCAGAATGTGTCTTGGCTATAC
CCTCTTGGTGCACGGAAGAGCACCGTGGCGCCGCCATCCACGCCCTGAAC
ATGGCCGGGCTGTCTGTCTTGTGAGGAGGGAGGGAGGGAGGGAGGGAGAG
AGGGAGGAAAGGAAGGACAAGATACCTCCAGGGAGGCGGAGAAGGAAGGA
AAGTTAGATGGAAAATCATTGCTGTGTCCGCTTCTGACTCTTCCTTCTCT
TCATTTCGTGTTTCTCCTCCCCTTCCTCCCCCTCTCCCTCTTCCCCTCCT
TACCTCCCAGGGGCGTCATCCGCGAGCCCCTGGCCACCCTCCTCGCCTTC
CGGCAGAACGAGGGGGAGGTCGGGGGGGAAGGAGGGAAAGAGGAAGGGCG
GTACATTGTCATTTATGACCTAGGACACTCTCATTGTGACGTCTCGGTTG
TCAGAGAGGATGCGCAGGTACAAGCCAGCCCTCCCTCCCTCCCTCCCTCC
TCCCTCTCTCATTCCCTCCCTCCTGCGAATCAACTTTCATCAAAATCACG
CCAAGATAGCGTTTCCCTTTTCGTTGCTGACCTTCCTGTCCTCCTTTCCT
CCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCCGT
CCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCCCCTTCACCCACCACCC
ATCCATACAGGGCTTTTACCAATTACTCCATTCCTCCTCCTCCCCCCTTC
CTCCCTCCCTCCTTCCACCCCTGCCCGGGGCGAGGCCTTTGTGGACCGAC
TCGTCTCCTTGTGCTGCGCGGATTTTCGGAAAAAGGCGGGCTGTGATGCC
ACAGAGAGCAAGAGAGCGATTGCCAAGGTAACCCCCTCCCTCCTCCCTCC
CTCCCTCCTCGTCCTCATCACCGTGTCCACCGTGTCCAACTCCCTCCTCT
TATCTTCCCTCCCTCCCTCCCTCCCTCCCCCCAGCTGAAGAAAGAGTGTG
AAAACGCCCTAAAAACTCTATCTACTTCGACCACGGTGGACATTGAAATC
GACTCCCTCTACGAGGGCTTCGACCTTCGGTCCGTCCCTCCCACCATCCT
TCCTTCCCTCCCTTCTTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTC
CCTCCTTTCCTCCTTCTCTCCTTCCTTCTCTCGTGTCCCCTCCTCCCTTA
TTCACATTGCCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCTTC
CTTCCCTCCCTGCAGCACCCGCATTACCCGTGCGCGTTTCGAGAGTGAAA
TTTTTGACATTCTCAAGGCCTGCATCTCCGCTGTAGAAGCCGCCCTTGCT
GCAGCGGTGCGTCCCTTCCCTCCCTCCTTCCCTTCCTCCCTCCCTCCCTT
CAACCGACCATTAACTCAGACCTACCCTTCCCTCTCCTCCCTCCCTCCCT
CCCAGGGCGTGGCAAAAGAAGACGTAGGTTTGCTTCTGCTCGCTGGCGGC
GCTTCCCGCGTTCCCAAACTCCAGCAATGGCTTCAAGGTATCTCCCTCCC
TCCCTCCTCCTCCCTCCCTCCCTCCCTCCCTTCCTCTTTTATTCTTTATG
GTGGTGTAAGGTATCTCTTCGCCTTCCCTCCCTTGACCGCATTAGCAGTC
GTCCTCCCTCTCTTCCTCCCTCCCTTCCTACCTCCGACTCATCCATTCCC
TTTGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGCCTCCTT
CCTCTCTCCCGCGGGCAGCACGCGCATCAAATCTGTGGACACGAACCCAG
AGGAGGGGGTGGCCCTGGGAGCCGCACTCCAGGTAAAAAGGGAGGAAGGG
AGAGAGGAAGGGAGGGAGGAAGGGAGGGAGAGAAACAAGAACAACAGGAG
CAGGAGGCAGCAACAACGACACCCCAACCTGTAATCAGCACCCTCACCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCCCAG
CTTCTCTCCCAAGCCGCCGCCACCGCCTCCTCCTCCTCCTCTTCCGCAGG
AGGCAGCGGCGACGCTCACCCCTTCACTCACAGCCTCACTACCTCCCCTC
TCTCCTTCGGCCTACTGGTCACCGACCTCCCCACAGAGGAGGGAGGGAAG
GAGGGAGGGATGACGACGGCGTTTTTCAAGTCCTTCTTGAAGCACGCGTC
GATTGCCTCCTCGGCGAAATCAAAAATAGGGGACAGGCAACCGTTCTTCC
TGATCCATCAAGGGGAGGTACGTCTTGAGGCCCCGCCTGCCCTCCCTCCC
TTCCTCCTTCCCCTCCTCCTTTGTCAAGGTTCTCTCTCTTTCTTTTTTTC
CCCGTCTTATTGAAAAAACAATAATCCAAAAAACGTAAATCCTCCCCCTA
CATTTTTTACATTCAATCCTCCCTCCCTCCCCTCTCTCCCTCCCTCCCTC
CCTCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGTT
CCTCCCCGCCTCCCAGCGTGTTCGTGTCAAAAAAAGCGCCAACGACCAGG
CCGACATTTCTCTGCACGTCGTGGCTGCCGGGTCGGAGGGACCGGTTGAG
GAAGGGGGGGAGGAAAGTGTCTTGACGCTGGCGGAGATTACGTACAGAGC
TCCAGAGGGAGATCAAACAGAGGAGGTATGTACAGCAGAAAAAGAATCAA
TCCTCTCTCCTTCCCTCCCTCTCTCTTTCCCTCCCTCTCACCTTCCCTCC
CTCCCTCCGGATTTTCCTTCCTTCAGTTGGACTTGATATCCTCCATATCT
CACCCTTCCCTCCTCCCTCCCTCCCTCCCTCCTCTCCTCCCTCCCTCCCC
TCCCTCCCTCCCTCCCCCCTCCCTCCAGTGGGATCTCACCATGACCCTGG
CCGCCGACGGCGTGCTGCGTGTCCGACTACAAGAGGTACGCCCTTCCTTT
ATCCCTCCTTCCCTCCCTTCCTCCCTTCCTCCTTCTACACTTCTTGTCGC
CTTCCCCCAAGCACATTTTCCCTCCTTCAATTGTTACCACATTTCCTTCC
CTTTCCTTCTATGTTCCCTCTCATGCCCCCTATGCCCTCCCTCCTTTCTT
CCCACACCTCCCTCCCTACTTCCCCCCTTCCTCCTCTGGCACCCACCCAC
CCACCCCTCCCCTCTTCACCCCATCCCTCCATCTATCTCATGCATACTCC
CCTTTCTCCCTTCCCTCTTCCTCCCTCCCTCCCTCTCCATAGAAGGACGG
TGGGCAGGTCCTAAGGGACGTAGTAATTCGCGCCAAAAAAGAAACTCAAA
ATTAA back to topCoding sequence (CDS) from alignment at chr24:529492..533596+ >NO24G02010.1 ID=NO24G02010.1|Name=NO24G02010.1|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at chr24:529492..533596+ (Nannochloropsis oceanica) ATGGATAAAGCCGGAGGAGACAGCAAGCTGGTCTTGGGACTGGCCATTGG CAGTGCGTACACCCGATCTGCTACCGCGACAGCCGCGTGCTTTCCCAAGG AAGGCGGGCGGGAAGGGGAAAAGGATAGCGGATTTATCTTGAACCGTCCA GAGATCGTGGTGAATGCGGACGGGGACCGCGGGACGGCCACGCTGGTGGC GCTGCGGAAGGAGGAGCAGGATGGTGGGGGGAAGCAGAAGGAGGGAGAGT GGTTGGTGGGGGCAGCGGCCAAGACGGCCATGGGCGGGCGCTACGCATCA CAAGTGCAATCTTGGGGAGGTATGACAATCCTACAAGCTTTGCTTGGGGA GAAGAAGGAGGACGAGGAGGATGAGGAAGAGGAGGAGGAAGAGGTGGTGG ACGAGGAGGAGGAAGGGAGGGAGGAGAAGGTGGGCATGGAGGAGGTGTGC AGCCAGTTACTGCAGCATGTAATTGAGCAGGCGGAGAACTCCAGTGGAGA GTGCCCTTCAGAATGTGTCTTGGCTATACCCTCTTGGTGCACGGAAGAGC ACCGTGGCGCCGCCATCCACGCCCTGAACATGGCCGGGCTGTCTGTCTTG GGCGTCATCCGCGAGCCCCTGGCCACCCTCCTCGCCTTCCGGCAGAACGA GGGGGAGAGAGGATGCGCAGGGCTTTTACCAATTACTCCATTCCTCCTCC TCCCCCCTTCCTCCCTCCCTCCTTCCACCCCTGCCCGGGGCGAGGCCTTT GTGGACCGACTCGTCTCCTTGTGCTGCGCGGATTTTCGGAAAAAGGCGGG CTGTGATGCCACAGAGAGCAAGAGAGCGATTGCCAAGCTGAAGAAAGAGT GTGAAAACGCCCTAAAAACTCTATCTACTTCGACCACGGTGGACATTGAA ATCGACTCCCTCTACGAGGGCTTCGACCTTCGCACCCGCATTACCCGTGC GCGTTTCGAGAGTGAAATTTTTGACATTCTCAAGGCCTGCATCTCCGCTG TAGAAGCCGCCCTTGCTGCAGCGGGCGTGGCAAAAGAAGACGTAGGTTTG CTTCTGCTCGCTGGCGGCGCTTCCCGCGTTCCCAAACTCCAGCAATGGCT TCAAGCCTCCTTCCTCTCTCCCGCGGGCAGCACGCGCATCAAATCTGTGG ACACGAACCCAGAGGAGGGGGTGGCCCTGGGAGCCGCACTCCAGGCCCAG CTTCTCTCCCAAGCCGCCGCCACCGCCTCCTCCTCCTCCTCTTCCGCAGG AGGCAGCGGCGACGCTCACCCCTTCACTCACAGCCTCACTACCTCCCCTC TCTCCTTCGGCCTACTGGTCACCGACCTCCCCACAGAGGAGGGAGGGAAG GAGGGAGGGATGACGACGGCGTTTTTCAAGTCCTTCTTGAAGCACGCGTC GATTGCCTCCTCGGCGAAATCAAAAATAGGGGACAGGCAACCGTTCTTCC TGATCCATCAAGGGGAGTTCCTCCCCGCCTCCCAGCGTGTTCGTGTCAAA AAAAGCGCCAACGACCAGGCCGACATTTCTCTGCACGTCGTGGCTGCCGG GTCGGAGGGACCGGTTGAGGAAGGGGGGGAGGAAAGTGTCTTGACGCTGG CGGAGATTACGTACAGAGCTCCAGAGGGAGATCAAACAGAGGAGTGGGAT CTCACCATGACCCTGGCCGCCGACGGCGTGCTGCGTGTCCGACTACAAGA GAAGGACGGTGGGCAGGTCCTAAGGGACGTAGTAATTCGCGCCAAAAAAG AAACTCAAAATTAA back to top
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