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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:520652..525240 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01990.1 vs.
Match: CEM37823.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 366.3 bits (939), Expect = 1.600e-97 Identity = 221/538 (41.08%), Postives = 314/538 (58.36%), Query Frame = 0
Query: 3 LQSLLPTKALVTIYSKRFASEADQAETWYRTPYKEFDV-SAQLVAYEQQEKKRAFPLLTKQPPPLQIHQPNPFLPRDLDLKAPTVPQPAIGSPIPGPSLLNDGESWRVFHKLDRTFGKPRVYAIFQVANPAFGSNPRNVALTRLLKVAFQDALSEFSYPAALAGLSYEVDFTAKGLRLAVGGYHDKLPQYTREVAARLYNFYQQLSSPSSSPSSASFDRYKDIVTRELEAFDNLQPYQHAGYHANLLLEEPKWPIPTIRDALLPLTLADLAAFASPSTLF-SQGYGTALLQGNILESEAIALTETVAAAIPFGAVLPKEKRTSRQITRLPATPS--------SSWG--LLLRRPEENKENTNGACQLCFQVESKEMKTRVTAELFSQLVEQPFYETLRTQQQLGYLVFSGMRVTEGIPSLLFIVQSNVADPETLADRMLLFIESCGKI-LEGLRQGEFESFVAGLVGKKLEREKRLEQQAGRHWEEISLGEYKYDRPQKEAALLRQLTKQNVVSFYRSFLLSQGPSRRLLTTQVYPQK 528
+Q+L P + LVT +K F D+ E WY TPY+E + L + QQ K PP L NPF+P D+ LK P A P+P P ++ D +WRVF+K DR FG P+ Y +F ++ A +P N L+RL +++ D L+EF+Y A LAGLSY VDF AKGL+L+ GGY+DKL + V+ R+ + F R++DI RE AFDN QPY+HA Y + L E P + +R AL LTL+DL F+S T+F S G+G L+QGN+ +SEA L TV + PF LP ++R +R++ LP TPS SS G L+LRR E N N N A L FQ+ +EMK ++TA++ L+E PFY LRT+QQLGY+V SG+ +T GIPSL F++QS+VADPETL R F++ + L L Q E + +A + L ++++L + RHW EI++G Y++ R +EA +LR L +V+SF+ +++ G RR+L+ +VY K
Sbjct: 580 IQNLTPQRVLVTCIAKDFEGTTDKTEEWYGTPYRERLIRETTLEEWAQQ----------KAPPDLTYPPANPFIPSDVSLKFSQTPD-AGRQPLP-PEIIRDDGTWRVFYKGDRKFGTPKAYGLFSLSTNAPLVSPENQVLSRLYELSVNDDLNEFAYDAGLAGLSYGVDFNAKGLQLSFGGYNDKLQDFVERVSRRI--------ATHMPTDEDKFSRFQDIARREFAAFDNQQPYEHARYFISRLTEIPTPSVEAVRQALEKLTLSDLQRFSS--TIFESGGFGETLIQGNLQQSEAKKLVATVENSFPF-TPLPPDQRPTRRVVELPRTPSTDKLSDPPSSLGEALVLRRQEPNVANPNSAASLVFQIGDREMKNKLTAQVVRSLLESPFYSELRTKQQLGYIVGSGLSLTSGIPSLRFVIQSSVADPETLVARAADFLDDFRRTRLAKLTQRELDGSIAAERDRILRKDQQLAAEVYRHWAEINIGTYRFGRQLEEAEMLRGLKVGDVLSFWDTYIGRGGRERRVLSCEVYASK 1094
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G01990.1 ID=NO24G01990.1|Name=NO24G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp
ATGCTGCTGCAGTCACTCCTTCCTACGAAGGCGCTCGTCACCATCTACTC
CAAGCGCTTTGCTTCAGAAGCCGATCAGGCCGAGACCTGGTACCGCACCC
CCTACAAGGAATTCGATGTGTCTGCGCAGTTGGTCGCCTACGAACAACAA
GAGAAAAAGCGAGCTTTTCCCTTGCTCACGAAACAGCCACCTCCCCTCCA
GATCCATCAACCTAACCCCTTCCTCCCCCGAGACCTCGACCTGAAAGCAC
CGACGGTGCCACAACCTGCTATCGGCTCCCCTATTCCTGGCCCCTCCCTA
CTAAATGACGGGGAGTCATGGCGTGTCTTCCACAAGCTGGATCGAACGTT
CGGTAAACCGAGGGTCTACGCCATCTTCCAGGTGGCCAACCCGGCGTTTG
GCTCCAATCCGCGCAATGTGGCCTTGACGCGTCTCCTCAAGGTAGCTTTC
CAAGACGCCCTGAGCGAGTTTTCTTACCCCGCAGCCCTGGCTGGTTTGTC
GTACGAAGTGGATTTCACGGCAAAAGGTCTCCGACTGGCTGTAGGTGGGT
ACCACGACAAGCTCCCGCAGTACACCAGGGAGGTTGCTGCCCGCCTCTAC
AATTTCTACCAGCAGCTCTCCTCCCCTTCCTCCTCCCCTTCATCCGCCTC
CTTCGACCGTTACAAGGATATCGTCACCCGCGAGCTCGAGGCCTTTGACA
ATCTCCAGCCCTACCAGCACGCAGGCTACCACGCCAACCTCCTCCTCGAG
GAACCCAAATGGCCCATTCCCACCATCAGAGACGCCCTTCTCCCCCTCAC
CCTCGCGGACTTGGCTGCCTTTGCCTCACCTTCGACGTTATTTTCCCAGG
GGTACGGAACGGCGTTGCTCCAGGGCAATATCCTCGAGAGCGAGGCCATA
GCCCTGACTGAGACGGTGGCTGCTGCCATCCCATTTGGTGCGGTCCTTCC
CAAGGAAAAGCGCACGTCGCGTCAAATCACCCGCCTCCCCGCAACGCCTT
CCTCGTCCTGGGGCCTGCTTCTTCGTAGGCCGGAAGAGAACAAAGAGAAC
ACCAACGGCGCGTGTCAGCTGTGCTTTCAGGTGGAGAGCAAGGAGATGAA
GACGAGGGTCACGGCCGAGCTCTTCTCCCAACTTGTCGAGCAGCCTTTCT
ATGAGACCCTGCGGACGCAGCAACAGCTCGGCTATCTGGTTTTCTCGGGC
ATGCGAGTGACGGAGGGCATTCCCTCGCTCCTCTTCATCGTCCAGTCCAA
CGTCGCAGACCCGGAGACCCTGGCGGACCGCATGCTCCTTTTTATCGAGT
CCTGCGGGAAGATTTTGGAGGGATTACGTCAAGGAGAATTCGAGTCGTTC
GTGGCAGGCTTGGTTGGAAAGAAGCTGGAGCGCGAAAAGCGGTTGGAGCA
ACAGGCAGGTCGTCACTGGGAAGAGATTTCGTTGGGGGAGTACAAATATG
ACCGTCCTCAGAAGGAGGCTGCGCTCCTGAGACAGCTGACCAAGCAAAAT
GTGGTTTCCTTCTACCGCTCCTTCCTCCTCTCCCAGGGCCCCTCCCGCCG
CCTCCTCACCACTCAGGTGTACCCGCAGAAAATGATGGAGGGCGGGAGGG
GGGAGGGAAGGAGGAGGTGA back to topprotein sequence of NO24G01990.1 >NO24G01990.1-protein ID=NO24G01990.1-protein|Name=NO24G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MLLQSLLPTKALVTIYSKRFASEADQAETWYRTPYKEFDVSAQLVAYEQQ
EKKRAFPLLTKQPPPLQIHQPNPFLPRDLDLKAPTVPQPAIGSPIPGPSL
LNDGESWRVFHKLDRTFGKPRVYAIFQVANPAFGSNPRNVALTRLLKVAF
QDALSEFSYPAALAGLSYEVDFTAKGLRLAVGGYHDKLPQYTREVAARLY
NFYQQLSSPSSSPSSASFDRYKDIVTRELEAFDNLQPYQHAGYHANLLLE
EPKWPIPTIRDALLPLTLADLAAFASPSTLFSQGYGTALLQGNILESEAI
ALTETVAAAIPFGAVLPKEKRTSRQITRLPATPSSSWGLLLRRPEENKEN
TNGACQLCFQVESKEMKTRVTAELFSQLVEQPFYETLRTQQQLGYLVFSG
MRVTEGIPSLLFIVQSNVADPETLADRMLLFIESCGKILEGLRQGEFESF
VAGLVGKKLEREKRLEQQAGRHWEEISLGEYKYDRPQKEAALLRQLTKQN
VVSFYRSFLLSQGPSRRLLTTQVYPQKMMEGGRGEGRRR* back to topmRNA from alignment at chr24:520652..525240- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G01990.1 ID=NO24G01990.1|Name=NO24G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=4589bp|location=Sequence derived from alignment at chr24:520652..525240- (Nannochloropsis oceanica)
ATGCTGCTGCAGGTACGCCGTCCTTTCCTTCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCAGCCCTTACCCCATATATGTTTTGGCTTCAATC
ATCGTGCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCC
CTCCCTCCCTCAGTCACTCCTTCCTACGAAGGCGCTCGTCACCATCTACT
CCAAGCGCTTTGCTTCAGAAGCCGATCAGGCCGAGACCTGGTACCGCACC
CCCTACAAGGTATGCTCTTCCCTCCCTCCCGCCCTCCGTCCCTCCCTCCC
TCCCTCAAAATCCTCTCTTCTCCTTCCTTCTGACCGCCCTCCCTTCCCTC
TCTCCCTACCTCCCTCTCACCCTCCCTCTTCCTTTCTTCCCAGGAATTCG
ATGTGTCTGCGCAGTTGGTCGCCTACGAACAACAAGAGAAAAAGCGAGCT
TTTCCCTTGCTCACGAAACAGCCACCTCCCCTCCAGATCCATCAACCTAA
CCCCTTCCTCCCCCGAGACCTCGACCTGAAAGCACCGACGGTGCCACAAC
CTGGTGAGGAGAGGGATAGGGGGAGGAAGTGAGGGAGGGAGTGAGGGAGG
GGATATAAACGAGTTACCTATCTTCGCCATCTCCTGATATCCCACCCCTC
CTCTCTCCGGCACTCCCTCCCTCCCTCCCTCCCCTCTCCCTCCCTTCCTC
CCAGCCGTTGGCTCCCCTATTCCTGGCCCTCCCTACTAAATGACGGGGAG
TCATGGCGTGTCTTCCACACTCACCCTCCCTCCCTCCCTCCCTCCCCCCT
CACTCCCTTCCTCTCAGCTATCGGCTCCCCTATTCCTGGCCCCTCCCTCC
TAAATGACGGGGAGTCATGGCGTGTCTTCCACACTCACCCTCCCTCCTCC
CTCCCTCCCCCCCCTCCCTTCCTCTCAGCTATCGGCTCCCCTATTCCTGG
CCCCTCCCTCCTAAATGACGGGGAGTCATGGCGTGTCTTCCACACTCACC
CTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCTTCCTCTCAGCTATCGGC
TCCCCTATTCCTGGCCCCTCCCTCCTAAATGACGGGGAGTCATGGCGTGT
CTTCCACACTCACCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCTTCCT
CTCAGCTATCGGCTCCCCTATTCCTGGCCCCTCCCTACTAAATGACGGGG
AGTCATGGCGTGTCTTCCACAAGCTGGATCGAACGTTCGGTAAACCGAGG
GTCTACGCCATCTTCCAGGTAAGCCCCTCCCTCCCTCGCTCCCTTCCTTC
CTCCCTCCTCATCACCGTCTTCCAAAACCCTATTAGGTGAGAACTTCCTG
AACAAACCCTCAGTCGCCTCTATCCACCCTGTCGCGAGGAAGAGAGAAAA
AAGGGGGCAAAGGGAGAAAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
CACGGGATCTGGCCGATGTCCGAGTTTATTGCCTACATGCCTCAATGGCT
TTATTATATCACACAGGTGGCCAACCCGGCGTTTGGCTCCAATCCGCGCA
ATGTGGCCTTGACGCGTCTCCTCAAGGTAAGGGAGCGAGAAAGATCAAGA
GAGAGAGAGAGGAAGAGAGCTATCATTTCAACTCCTCCTCCCTCCCTCCC
TCTTATTTCTCCCCCCTCCCCTCCTCCCTCCCTATCTCCCTTCCTCCCTC
CCTCCCTTCCTCCCTCCCTTCCTCCAGGTAGCTTTCCAAGACGCCCTGAG
CGAGTTTTCTTACCCCGCAGCCCTGGCTGGTTTGTCGTACGAAGTGGATT
TCACGGCAAAAGGTCTCCGACTGGCTGTAGGTGGGTACCACGACAAGCTC
CCGCAGTACACCAGGTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
TGAGGGAGGGAGAGAGGGAGGGAGGGACTGCTTTTCGAGCGTTGATGCTC
CGTCATACATGCACAGACAAATTGCACAAGAGTCATCTCATCTTTTGTAC
TCTCTAGTTCTCATAATAATCGTCTCTTCCTCTAGTTCTCACCCCCCCTC
CTTTCCTTCTTTCCTTCCCAATCAACCTCTTTGCTTCCTTCCTCTCTCCC
TCCCCTTCCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCATCATCCCAGGGAGGTTGCTGCCCGCCTCTACAATTTCTACCAGCA
GCTCTCCTCCCCTTCCTCCTCCCCTTCATCCGCCTCCTTCGACCGTTACA
AGGATATCGTCACCCGCGAGCTCGAGGCCTTTGACAATCTCCAGCCCTAC
CAGCACGCAGGGTGAGCCCGGCCTCCCTCCCTCCCTCCCTCCCTCCCCCC
TTTCCTCCCTCCCTTCCTTCCTCCCTTCCCTCTCTTTATTCGTGCCGATC
TCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCGTAGCTACCAC
GCCAACCTCCTCCTCGAGGAACCCAAATGGCCCATTCCCACCATCAGAGA
CGCCCTTCTCCCCCTCACCCTCGCGGACTTGGCTGCCTTTGCCTCACCTT
CGACGTTATTTTCCCAGGGGTACGGAACGGCGTTGCTCCAGGTAAGGCGG
GAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCATGTGACCACCA
GCACGCTAAACCTTCTCCCTTTCCCTCCCTTCCTCCCTCCATCCCTGCCT
CCCTTCCTCCCTCCCTCAAGGGCAATATCCTCGAGAGCGAGGCCATAGCC
CTGACTGAGACGGTGGCTGCTGCCATCCCATTTGGTGCGGTCCTTCCCAA
GGAAAAGCGCACGTCGGTAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGG
GAAAGAGAGAATCCATTTGACCTCTTTAAAGTGTCTCTCATTCTCACTCG
CCCTGCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTGCAGCGTCAAATCA
CCCGCCTCCCCGCAACGCCTTCCTCGTCCTGGGGCCTGCTTCTTCGTAGG
CCGGAAGAGAACAAAGAGAACACCAACGGCGCGTGTCAGCTGTGCTTTCA
GGTGGAGAGCAAGGAGATGAAGACGAGGGTGAGGAGGGAGGGGAGGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTTCGCTTGGCTTGACTGCA
CCACCATCTATCTCCCTCTTTCCTTTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTGCATGAGGTCATTCCCATGTGCCACCATTCATCTCCCTCCCTC
CCTCCTCCCTCCTCCTTTTCTTCCTCCCTCCCTCCCTCCTCCCTCCTCCT
TTTCTTCCTCCCTTCCTCCCTCCCTCAGGTCACGGCCGAGCTCTTCTCCC
AACTTGTCGAGCAGCCTTTCTATGAGACCCTGCGGACGCAGCAACAGCTC
GGCTATCTGGTTTTCTCGGGTAGGGAGGGAGGGAGGGAGGCAAGGAAAGA
GGGACGGCGGCACGGAGGCAGCTTCGAAGGGAGGGAAGGAGGGAAGGAGT
GCGGTGTGTAAAATTGTAACCGACTCTACTTAGGTGTGCGTGTGTATGAA
TAATATACACCTAGATCTAATCTAATCTAACTGAATCGAATTGACTCTTA
TCAAATCTAATCTAATCTAATCTAACCTAATGTAATTTAACCACAGGCAT
GCGAGTGACGGAGGGCATTCCCTCGCTCCTCTTCATCGTCCAGTCCAACG
TCGCAGACCCGGAGGTAAGAGGGGGGGAGGGAGAGAGGGAAGGGAGGAGG
GCGGTCGCTTCCCCAGCACCCGAGAAAATTAAACCCTCCCTCCCTCCGTC
CTTCCCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTAGACCCTGG
CGGACCGCATGCTCCTTTTTATCGAGTCCTGCGGGAAGATTTTGGAGGGA
TTACGTCAAGGAGAATTCGAGTCGTTCGTGGCAGGCTTGGTAGGGGGGCC
GAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGCACCGCTG
ATCTGTAAGCGATGCGTAAAGACTGTTTTTGGGCACTGATCCCCTTCTCT
CTCCCTCCTTCCCTCCCTCCCTCCCTCGCTCCCTATAGGTTGGAAAGAAG
CTGGAGCGCGAAAAGCGGTTGGAGCAACAGGCAGGTCGTCACTGGGAAGA
GATTTCGTTGGGGGAGTACAAATATGACCGGTAAGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGAGGGAAGGGGAGGGAAGAGCAGGGAGCATG
GACTTGACTGCTTTCGATGGTCGCTGTCGTCTATCGGCCATTGCAAACCT
CATTCTTCCTTCCCTCTCTCCCTCCCTTTCTTTCTTCCCTCCCTCCCTCT
CTTCCCCCTCCCTTCCTTCCTTCGCTCTCCCCTCCCTCCCTCCTCCCCTC
TTTCCCGTTCTCCCTCTTTCCAGTCCTCAGAAGGAGGCTGCGCTCCTGAG
ACAGCTGACCAAGCAAAATGTGGTTTCCTTCTACCGCTCCTTCCTCCTCT
CCCAGGGCCCCTCCCGCCGCCTCCTCACCACTCAGGTGTACCCGCAGAAA
ATGATGGAGGGCGGGAGGGGGGAGGGAAGGAGGAGGTGA back to topCoding sequence (CDS) from alignment at chr24:520652..525240- >NO24G01990.1 ID=NO24G01990.1|Name=NO24G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr24:520652..525240- (Nannochloropsis oceanica)
ATGCTGCTGCAGTCACTCCTTCCTACGAAGGCGCTCGTCACCATCTACTC
CAAGCGCTTTGCTTCAGAAGCCGATCAGGCCGAGACCTGGTACCGCACCC
CCTACAAGGAATTCGATGTGTCTGCGCAGTTGGTCGCCTACGAACAACAA
GAGAAAAAGCGAGCTTTTCCCTTGCTCACGAAACAGCCACCTCCCCTCCA
GATCCATCAACCTAACCCCTTCCTCCCCCGAGACCTCGACCTGAAAGCAC
CGACGGTGCCACAACCTGCTATCGGCTCCCCTATTCCTGGCCCCTCCCTA
CTAAATGACGGGGAGTCATGGCGTGTCTTCCACAAGCTGGATCGAACGTT
CGGTAAACCGAGGGTCTACGCCATCTTCCAGGTGGCCAACCCGGCGTTTG
GCTCCAATCCGCGCAATGTGGCCTTGACGCGTCTCCTCAAGGTAGCTTTC
CAAGACGCCCTGAGCGAGTTTTCTTACCCCGCAGCCCTGGCTGGTTTGTC
GTACGAAGTGGATTTCACGGCAAAAGGTCTCCGACTGGCTGTAGGTGGGT
ACCACGACAAGCTCCCGCAGTACACCAGGGAGGTTGCTGCCCGCCTCTAC
AATTTCTACCAGCAGCTCTCCTCCCCTTCCTCCTCCCCTTCATCCGCCTC
CTTCGACCGTTACAAGGATATCGTCACCCGCGAGCTCGAGGCCTTTGACA
ATCTCCAGCCCTACCAGCACGCAGGCTACCACGCCAACCTCCTCCTCGAG
GAACCCAAATGGCCCATTCCCACCATCAGAGACGCCCTTCTCCCCCTCAC
CCTCGCGGACTTGGCTGCCTTTGCCTCACCTTCGACGTTATTTTCCCAGG
GGTACGGAACGGCGTTGCTCCAGGGCAATATCCTCGAGAGCGAGGCCATA
GCCCTGACTGAGACGGTGGCTGCTGCCATCCCATTTGGTGCGGTCCTTCC
CAAGGAAAAGCGCACGTCGCGTCAAATCACCCGCCTCCCCGCAACGCCTT
CCTCGTCCTGGGGCCTGCTTCTTCGTAGGCCGGAAGAGAACAAAGAGAAC
ACCAACGGCGCGTGTCAGCTGTGCTTTCAGGTGGAGAGCAAGGAGATGAA
GACGAGGGTCACGGCCGAGCTCTTCTCCCAACTTGTCGAGCAGCCTTTCT
ATGAGACCCTGCGGACGCAGCAACAGCTCGGCTATCTGGTTTTCTCGGGC
ATGCGAGTGACGGAGGGCATTCCCTCGCTCCTCTTCATCGTCCAGTCCAA
CGTCGCAGACCCGGAGACCCTGGCGGACCGCATGCTCCTTTTTATCGAGT
CCTGCGGGAAGATTTTGGAGGGATTACGTCAAGGAGAATTCGAGTCGTTC
GTGGCAGGCTTGGTTGGAAAGAAGCTGGAGCGCGAAAAGCGGTTGGAGCA
ACAGGCAGGTCGTCACTGGGAAGAGATTTCGTTGGGGGAGTACAAATATG
ACCGTCCTCAGAAGGAGGCTGCGCTCCTGAGACAGCTGACCAAGCAAAAT
GTGGTTTCCTTCTACCGCTCCTTCCTCCTCTCCCAGGGCCCCTCCCGCCG
CCTCCTCACCACTCAGGTGTACCCGCAGAAAATGATGGAGGGCGGGAGGG
GGGAGGGAAGGAGGAGGTGA back to top
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