Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr24 genome chr24:520652..525240 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01990.1 vs.
Match: CEM37823.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])
HSP 1 Score: 366.3 bits (939), Expect = 1.600e-97
Identity = 221/538 (41.08%), Postives = 314/538 (58.36%), Query Frame = 0
Query: 3 LQSLLPTKALVTIYSKRFASEADQAETWYRTPYKEFDV-SAQLVAYEQQEKKRAFPLLTKQPPPLQIHQPNPFLPRDLDLKAPTVPQPAIGSPIPGPSLLNDGESWRVFHKLDRTFGKPRVYAIFQVANPAFGSNPRNVALTRLLKVAFQDALSEFSYPAALAGLSYEVDFTAKGLRLAVGGYHDKLPQYTREVAARLYNFYQQLSSPSSSPSSASFDRYKDIVTRELEAFDNLQPYQHAGYHANLLLEEPKWPIPTIRDALLPLTLADLAAFASPSTLF-SQGYGTALLQGNILESEAIALTETVAAAIPFGAVLPKEKRTSRQITRLPATPS--------SSWG--LLLRRPEENKENTNGACQLCFQVESKEMKTRVTAELFSQLVEQPFYETLRTQQQLGYLVFSGMRVTEGIPSLLFIVQSNVADPETLADRMLLFIESCGKI-LEGLRQGEFESFVAGLVGKKLEREKRLEQQAGRHWEEISLGEYKYDRPQKEAALLRQLTKQNVVSFYRSFLLSQGPSRRLLTTQVYPQK 528
+Q+L P + LVT +K F D+ E WY TPY+E + L + QQ K PP L NPF+P D+ LK P A P+P P ++ D +WRVF+K DR FG P+ Y +F ++ A +P N L+RL +++ D L+EF+Y A LAGLSY VDF AKGL+L+ GGY+DKL + V+ R+ + F R++DI RE AFDN QPY+HA Y + L E P + +R AL LTL+DL F+S T+F S G+G L+QGN+ +SEA L TV + PF LP ++R +R++ LP TPS SS G L+LRR E N N N A L FQ+ +EMK ++TA++ L+E PFY LRT+QQLGY+V SG+ +T GIPSL F++QS+VADPETL R F++ + L L Q E + +A + L ++++L + RHW EI++G Y++ R +EA +LR L +V+SF+ +++ G RR+L+ +VY K
Sbjct: 580 IQNLTPQRVLVTCIAKDFEGTTDKTEEWYGTPYRERLIRETTLEEWAQQ----------KAPPDLTYPPANPFIPSDVSLKFSQTPD-AGRQPLP-PEIIRDDGTWRVFYKGDRKFGTPKAYGLFSLSTNAPLVSPENQVLSRLYELSVNDDLNEFAYDAGLAGLSYGVDFNAKGLQLSFGGYNDKLQDFVERVSRRI--------ATHMPTDEDKFSRFQDIARREFAAFDNQQPYEHARYFISRLTEIPTPSVEAVRQALEKLTLSDLQRFSS--TIFESGGFGETLIQGNLQQSEAKKLVATVENSFPF-TPLPPDQRPTRRVVELPRTPSTDKLSDPPSSLGEALVLRRQEPNVANPNSAASLVFQIGDREMKNKLTAQVVRSLLESPFYSELRTKQQLGYIVGSGLSLTSGIPSLRFVIQSSVADPETLVARAADFLDDFRRTRLAKLTQRELDGSIAAERDRILRKDQQLAAEVYRHWAEINIGTYRFGRQLEEAEMLRGLKVGDVLSFWDTYIGRGGRERRVLSCEVYASK 1094
The following BLAST results are available for this feature:
BLAST of NO24G01990.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 Expect = 1.60e-97 / Id = 41.08 Sequence CEM37823.1
Match Name E-value Identity Description
CEM37823.1 1.600e-97 41.08 unnamed protein product [Vitrella brassicaformis C... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO24G01990.1 ID=NO24G01990.1|Name=NO24G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp ATGCTGCTGCAGTCACTCCTTCCTACGAAGGCGCTCGTCACCATCTACTC CAAGCGCTTTGCTTCAGAAGCCGATCAGGCCGAGACCTGGTACCGCACCC CCTACAAGGAATTCGATGTGTCTGCGCAGTTGGTCGCCTACGAACAACAA GAGAAAAAGCGAGCTTTTCCCTTGCTCACGAAACAGCCACCTCCCCTCCA GATCCATCAACCTAACCCCTTCCTCCCCCGAGACCTCGACCTGAAAGCAC CGACGGTGCCACAACCTGCTATCGGCTCCCCTATTCCTGGCCCCTCCCTA CTAAATGACGGGGAGTCATGGCGTGTCTTCCACAAGCTGGATCGAACGTT CGGTAAACCGAGGGTCTACGCCATCTTCCAGGTGGCCAACCCGGCGTTTG GCTCCAATCCGCGCAATGTGGCCTTGACGCGTCTCCTCAAGGTAGCTTTC CAAGACGCCCTGAGCGAGTTTTCTTACCCCGCAGCCCTGGCTGGTTTGTC GTACGAAGTGGATTTCACGGCAAAAGGTCTCCGACTGGCTGTAGGTGGGT ACCACGACAAGCTCCCGCAGTACACCAGGGAGGTTGCTGCCCGCCTCTAC AATTTCTACCAGCAGCTCTCCTCCCCTTCCTCCTCCCCTTCATCCGCCTC CTTCGACCGTTACAAGGATATCGTCACCCGCGAGCTCGAGGCCTTTGACA ATCTCCAGCCCTACCAGCACGCAGGCTACCACGCCAACCTCCTCCTCGAG GAACCCAAATGGCCCATTCCCACCATCAGAGACGCCCTTCTCCCCCTCAC CCTCGCGGACTTGGCTGCCTTTGCCTCACCTTCGACGTTATTTTCCCAGG GGTACGGAACGGCGTTGCTCCAGGGCAATATCCTCGAGAGCGAGGCCATA GCCCTGACTGAGACGGTGGCTGCTGCCATCCCATTTGGTGCGGTCCTTCC CAAGGAAAAGCGCACGTCGCGTCAAATCACCCGCCTCCCCGCAACGCCTT CCTCGTCCTGGGGCCTGCTTCTTCGTAGGCCGGAAGAGAACAAAGAGAAC ACCAACGGCGCGTGTCAGCTGTGCTTTCAGGTGGAGAGCAAGGAGATGAA GACGAGGGTCACGGCCGAGCTCTTCTCCCAACTTGTCGAGCAGCCTTTCT ATGAGACCCTGCGGACGCAGCAACAGCTCGGCTATCTGGTTTTCTCGGGC ATGCGAGTGACGGAGGGCATTCCCTCGCTCCTCTTCATCGTCCAGTCCAA CGTCGCAGACCCGGAGACCCTGGCGGACCGCATGCTCCTTTTTATCGAGT CCTGCGGGAAGATTTTGGAGGGATTACGTCAAGGAGAATTCGAGTCGTTC GTGGCAGGCTTGGTTGGAAAGAAGCTGGAGCGCGAAAAGCGGTTGGAGCA ACAGGCAGGTCGTCACTGGGAAGAGATTTCGTTGGGGGAGTACAAATATG ACCGTCCTCAGAAGGAGGCTGCGCTCCTGAGACAGCTGACCAAGCAAAAT GTGGTTTCCTTCTACCGCTCCTTCCTCCTCTCCCAGGGCCCCTCCCGCCG CCTCCTCACCACTCAGGTGTACCCGCAGAAAATGATGGAGGGCGGGAGGG GGGAGGGAAGGAGGAGGTGA back to top protein sequence of NO24G01990.1
>NO24G01990.1-protein ID=NO24G01990.1-protein|Name=NO24G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp MLLQSLLPTKALVTIYSKRFASEADQAETWYRTPYKEFDVSAQLVAYEQQ EKKRAFPLLTKQPPPLQIHQPNPFLPRDLDLKAPTVPQPAIGSPIPGPSL LNDGESWRVFHKLDRTFGKPRVYAIFQVANPAFGSNPRNVALTRLLKVAF QDALSEFSYPAALAGLSYEVDFTAKGLRLAVGGYHDKLPQYTREVAARLY NFYQQLSSPSSSPSSASFDRYKDIVTRELEAFDNLQPYQHAGYHANLLLE EPKWPIPTIRDALLPLTLADLAAFASPSTLFSQGYGTALLQGNILESEAI ALTETVAAAIPFGAVLPKEKRTSRQITRLPATPSSSWGLLLRRPEENKEN TNGACQLCFQVESKEMKTRVTAELFSQLVEQPFYETLRTQQQLGYLVFSG MRVTEGIPSLLFIVQSNVADPETLADRMLLFIESCGKILEGLRQGEFESF VAGLVGKKLEREKRLEQQAGRHWEEISLGEYKYDRPQKEAALLRQLTKQN VVSFYRSFLLSQGPSRRLLTTQVYPQKMMEGGRGEGRRR* back to top mRNA from alignment at chr24:520652..525240-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01990.1 ID=NO24G01990.1|Name=NO24G01990.1|organism=Nannochloropsis oceanica|type=mRNA|length=4589bp|location=Sequence derived from alignment at chr24:520652..525240- (Nannochloropsis oceanica)ATGCTGCTGCAG GTACGCCGTCCTTTCCTTCTTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTTCAGCCCTTACCCCATATATGTTTTGGCTTCAATC
ATCGTGCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCC
CTCCCTCCCTCAGTCACTCCTTCCTACGAAGGCGCTCGTCACCATCTACT
CCAAGCGCTTTGCTTCAGAAGCCGATCAGGCCGAGACCTGGTACCGCACC
CCCTACAAG GTATGCTCTTCCCTCCCTCCCGCCCTCCGTCCCTCCCTCCC
TCCCTCAAAATCCTCTCTTCTCCTTCCTTCTGACCGCCCTCCCTTCCCTC
TCTCCCTACCTCCCTCTCACCCTCCCTCTTCCTTTCTTCCCAGGAATTCG
ATGTGTCTGCGCAGTTGGTCGCCTACGAACAACAAGAGAAAAAGCGAGCT
TTTCCCTTGCTCACGAAACAGCCACCTCCCCTCCAGATCCATCAACCTAA
CCCCTTCCTCCCCCGAGACCTCGACCTGAAAGCACCGACGGTGCCACAAC
CTG GTGAGGAGAGGGATAGGGGGAGGAAGTGAGGGAGGGAGTGAGGGAGG
GGATATAAACGAGTTACCTATCTTCGCCATCTCCTGATATCCCACCCCTC
CTCTCTCCGGCACTCCCTCCCTCCCTCCCTCCCCTCTCCCTCCCTTCCTC
CCAGCCGTTGGCTCCCCTATTCCTGGCCCTCCCTACTAAATGACGGGGAG
TCATGGCGTGTCTTCCACACTCACCCTCCCTCCCTCCCTCCCTCCCCCCT
CACTCCCTTCCTCTCAGCTATCGGCTCCCCTATTCCTGGCCCCTCCCTCC
TAAATGACGGGGAGTCATGGCGTGTCTTCCACACTCACCCTCCCTCCTCC
CTCCCTCCCCCCCCTCCCTTCCTCTCAGCTATCGGCTCCCCTATTCCTGG
CCCCTCCCTCCTAAATGACGGGGAGTCATGGCGTGTCTTCCACACTCACC
CTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCCTTCCTCTCAGCTATCGGC
TCCCCTATTCCTGGCCCCTCCCTCCTAAATGACGGGGAGTCATGGCGTGT
CTTCCACACTCACCCTCCCTCCCTCCCTCCCTCCCCCCTCCCTCCTTCCT
CTCAGCTATCGGCTCCCCTATTCCTGGCCCCTCCCTACTAAATGACGGGG
AGTCATGGCGTGTCTTCCACAAGCTGGATCGAACGTTCGGTAAACCGAGG
GTCTACGCCATCTTCCAG GTAAGCCCCTCCCTCCCTCGCTCCCTTCCTTC
CTCCCTCCTCATCACCGTCTTCCAAAACCCTATTAGGTGAGAACTTCCTG
AACAAACCCTCAGTCGCCTCTATCCACCCTGTCGCGAGGAAGAGAGAAAA
AAGGGGGCAAAGGGAGAAAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
CACGGGATCTGGCCGATGTCCGAGTTTATTGCCTACATGCCTCAATGGCT
TTATTATATCACACAGGTGGCCAACCCGGCGTTTGGCTCCAATCCGCGCA
ATGTGGCCTTGACGCGTCTCCTCAAG GTAAGGGAGCGAGAAAGATCAAGA
GAGAGAGAGAGGAAGAGAGCTATCATTTCAACTCCTCCTCCCTCCCTCCC
TCTTATTTCTCCCCCCTCCCCTCCTCCCTCCCTATCTCCCTTCCTCCCTC
CCTCCCTTCCTCCCTCCCTTCCTCCAGGTAGCTTTCCAAGACGCCCTGAG
CGAGTTTTCTTACCCCGCAGCCCTGGCTGGTTTGTCGTACGAAGTGGATT
TCACGGCAAAAGGTCTCCGACTGGCTGTAGGTGGGTACCACGACAAGCTC
CCGCAGTACACCAG GTGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
TGAGGGAGGGAGAGAGGGAGGGAGGGACTGCTTTTCGAGCGTTGATGCTC
CGTCATACATGCACAGACAAATTGCACAAGAGTCATCTCATCTTTTGTAC
TCTCTAGTTCTCATAATAATCGTCTCTTCCTCTAGTTCTCACCCCCCCTC
CTTTCCTTCTTTCCTTCCCAATCAACCTCTTTGCTTCCTTCCTCTCTCCC
TCCCCTTCCCCTCCCTCCCTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCATCATCCCAGGGAGGTTGCTGCCCGCCTCTACAATTTCTACCAGCA
GCTCTCCTCCCCTTCCTCCTCCCCTTCATCCGCCTCCTTCGACCGTTACA
AGGATATCGTCACCCGCGAGCTCGAGGCCTTTGACAATCTCCAGCCCTAC
CAGCACGCAGG GTGAGCCCGGCCTCCCTCCCTCCCTCCCTCCCTCCCCCC
TTTCCTCCCTCCCTTCCTTCCTCCCTTCCCTCTCTTTATTCGTGCCGATC
TCCCTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCGTAGCTACCAC
GCCAACCTCCTCCTCGAGGAACCCAAATGGCCCATTCCCACCATCAGAGA
CGCCCTTCTCCCCCTCACCCTCGCGGACTTGGCTGCCTTTGCCTCACCTT
CGACGTTATTTTCCCAGGGGTACGGAACGGCGTTGCTCCAG GTAAGGCGG
GAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCATGTGACCACCA
GCACGCTAAACCTTCTCCCTTTCCCTCCCTTCCTCCCTCCATCCCTGCCT
CCCTTCCTCCCTCCCTCAAGGGCAATATCCTCGAGAGCGAGGCCATAGCC
CTGACTGAGACGGTGGCTGCTGCCATCCCATTTGGTGCGGTCCTTCCCAA
GGAAAAGCGCACGTCG GTAAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGG
GAAAGAGAGAATCCATTTGACCTCTTTAAAGTGTCTCTCATTCTCACTCG
CCCTGCTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTGCAGCGTCAAATCA
CCCGCCTCCCCGCAACGCCTTCCTCGTCCTGGGGCCTGCTTCTTCGTAGG
CCGGAAGAGAACAAAGAGAACACCAACGGCGCGTGTCAGCTGTGCTTTCA
GGTGGAGAGCAAGGAGATGAAGACGAGG GTGAGGAGGGAGGGGAGGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTTTCGCTTGGCTTGACTGCA
CCACCATCTATCTCCCTCTTTCCTTTCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTGCATGAGGTCATTCCCATGTGCCACCATTCATCTCCCTCCCTC
CCTCCTCCCTCCTCCTTTTCTTCCTCCCTCCCTCCCTCCTCCCTCCTCCT
TTTCTTCCTCCCTTCCTCCCTCCCTCAGGTCACGGCCGAGCTCTTCTCCC
AACTTGTCGAGCAGCCTTTCTATGAGACCCTGCGGACGCAGCAACAGCTC
GGCTATCTGGTTTTCTCGG GTAGGGAGGGAGGGAGGGAGGCAAGGAAAGA
GGGACGGCGGCACGGAGGCAGCTTCGAAGGGAGGGAAGGAGGGAAGGAGT
GCGGTGTGTAAAATTGTAACCGACTCTACTTAGGTGTGCGTGTGTATGAA
TAATATACACCTAGATCTAATCTAATCTAACTGAATCGAATTGACTCTTA
TCAAATCTAATCTAATCTAATCTAACCTAATGTAATTTAACCACAGGCAT
GCGAGTGACGGAGGGCATTCCCTCGCTCCTCTTCATCGTCCAGTCCAACG
TCGCAGACCCGGAG GTAAGAGGGGGGGAGGGAGAGAGGGAAGGGAGGAGG
GCGGTCGCTTCCCCAGCACCCGAGAAAATTAAACCCTCCCTCCCTCCGTC
CTTCCCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTAGACCCTGG
CGGACCGCATGCTCCTTTTTATCGAGTCCTGCGGGAAGATTTTGGAGGGA
TTACGTCAAGGAGAATTCGAGTCGTTCGTGGCAGGCTTG GTAGGGGGGCC
GAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGCACCGCTG
ATCTGTAAGCGATGCGTAAAGACTGTTTTTGGGCACTGATCCCCTTCTCT
CTCCCTCCTTCCCTCCCTCCCTCCCTCGCTCCCTATAGGTTGGAAAGAAG
CTGGAGCGCGAAAAGCGGTTGGAGCAACAGGCAGGTCGTCACTGGGAAGA
GATTTCGTTGGGGGAGTACAAATATGACCG GTAAGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGAGGGAAGGGGAGGGAAGAGCAGGGAGCATG
GACTTGACTGCTTTCGATGGTCGCTGTCGTCTATCGGCCATTGCAAACCT
CATTCTTCCTTCCCTCTCTCCCTCCCTTTCTTTCTTCCCTCCCTCCCTCT
CTTCCCCCTCCCTTCCTTCCTTCGCTCTCCCCTCCCTCCCTCCTCCCCTC
TTTCCCGTTCTCCCTCTTTCCAGTCCTCAGAAGGAGGCTGCGCTCCTGAG
ACAGCTGACCAAGCAAAATGTGGTTTCCTTCTACCGCTCCTTCCTCCTCT
CCCAGGGCCCCTCCCGCCGCCTCCTCACCACTCAGGTGTACCCGCAGAAA
ATGATGGAGGGCGGGAGGGGGGAGGGAAGGAGGAGGTGA back to top Coding sequence (CDS) from alignment at chr24:520652..525240-
>NO24G01990.1 ID=NO24G01990.1|Name=NO24G01990.1|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at chr24:520652..525240- (Nannochloropsis oceanica) ATGCTGCTGCAGTCACTCCTTCCTACGAAGGCGCTCGTCACCATCTACTC CAAGCGCTTTGCTTCAGAAGCCGATCAGGCCGAGACCTGGTACCGCACCC CCTACAAGGAATTCGATGTGTCTGCGCAGTTGGTCGCCTACGAACAACAA GAGAAAAAGCGAGCTTTTCCCTTGCTCACGAAACAGCCACCTCCCCTCCA GATCCATCAACCTAACCCCTTCCTCCCCCGAGACCTCGACCTGAAAGCAC CGACGGTGCCACAACCTGCTATCGGCTCCCCTATTCCTGGCCCCTCCCTA CTAAATGACGGGGAGTCATGGCGTGTCTTCCACAAGCTGGATCGAACGTT CGGTAAACCGAGGGTCTACGCCATCTTCCAGGTGGCCAACCCGGCGTTTG GCTCCAATCCGCGCAATGTGGCCTTGACGCGTCTCCTCAAGGTAGCTTTC CAAGACGCCCTGAGCGAGTTTTCTTACCCCGCAGCCCTGGCTGGTTTGTC GTACGAAGTGGATTTCACGGCAAAAGGTCTCCGACTGGCTGTAGGTGGGT ACCACGACAAGCTCCCGCAGTACACCAGGGAGGTTGCTGCCCGCCTCTAC AATTTCTACCAGCAGCTCTCCTCCCCTTCCTCCTCCCCTTCATCCGCCTC CTTCGACCGTTACAAGGATATCGTCACCCGCGAGCTCGAGGCCTTTGACA ATCTCCAGCCCTACCAGCACGCAGGCTACCACGCCAACCTCCTCCTCGAG GAACCCAAATGGCCCATTCCCACCATCAGAGACGCCCTTCTCCCCCTCAC CCTCGCGGACTTGGCTGCCTTTGCCTCACCTTCGACGTTATTTTCCCAGG GGTACGGAACGGCGTTGCTCCAGGGCAATATCCTCGAGAGCGAGGCCATA GCCCTGACTGAGACGGTGGCTGCTGCCATCCCATTTGGTGCGGTCCTTCC CAAGGAAAAGCGCACGTCGCGTCAAATCACCCGCCTCCCCGCAACGCCTT CCTCGTCCTGGGGCCTGCTTCTTCGTAGGCCGGAAGAGAACAAAGAGAAC ACCAACGGCGCGTGTCAGCTGTGCTTTCAGGTGGAGAGCAAGGAGATGAA GACGAGGGTCACGGCCGAGCTCTTCTCCCAACTTGTCGAGCAGCCTTTCT ATGAGACCCTGCGGACGCAGCAACAGCTCGGCTATCTGGTTTTCTCGGGC ATGCGAGTGACGGAGGGCATTCCCTCGCTCCTCTTCATCGTCCAGTCCAA CGTCGCAGACCCGGAGACCCTGGCGGACCGCATGCTCCTTTTTATCGAGT CCTGCGGGAAGATTTTGGAGGGATTACGTCAAGGAGAATTCGAGTCGTTC GTGGCAGGCTTGGTTGGAAAGAAGCTGGAGCGCGAAAAGCGGTTGGAGCA ACAGGCAGGTCGTCACTGGGAAGAGATTTCGTTGGGGGAGTACAAATATG ACCGTCCTCAGAAGGAGGCTGCGCTCCTGAGACAGCTGACCAAGCAAAAT GTGGTTTCCTTCTACCGCTCCTTCCTCCTCTCCCAGGGCCCCTCCCGCCG CCTCCTCACCACTCAGGTGTACCCGCAGAAAATGATGGAGGGCGGGAGGG GGGAGGGAAGGAGGAGGTGA back to top