NO24G01940.1, NO24G01940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01940.1
Unique NameNO24G01940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length366
Alignment locationchr24:511333..511698 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:511333..511698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01940NO24G01940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01940.1NO24G01940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01940.1.cds1NO24G01940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01940.1 ID=NO24G01940.1|Name=NO24G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=366bp
ATGCACCACAAACAAGGCACAGCGCCATACATACGATACGCAGGGCACAG
CGCCACACACAGCGGTATTTCACGAAGGGTTCAGCCCTCGGTAACGAAAG
CGTCCTCGACGGCGGTCATCATCACCTCTGGCGCCTGGCACAAAGGCGAC
TACTCCGGCAGCGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGG
CAGAAGTACAACAGCATTCCCAAAGTGTAGTCCCATCTCCAGCTCCAGCT
ATGGAGAAATCACCTGCACCATCGTGCCCCAGGTCTCCCCCCTCCCCTGC
TTCTGGACCACGGCGCTCGTCCTCCTTTTCCTCTCCCTCCCCCTCCTCTT
CCTCCTTTGCTCATGA
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protein sequence of NO24G01940.1

>NO24G01940.1-protein ID=NO24G01940.1-protein|Name=NO24G01940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MHHKQGTAPYIRYAGHSATHSGISRRVQPSVTKASSTAVIITSGAWHKGD
YSGSGSSSSSSSSSSSGRSTTAFPKCSPISSSSYGEITCTIVPQVSPLPC
FWTTALVLLFLSLPLLFLLCS*
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mRNA from alignment at chr24:511333..511698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01940.1 ID=NO24G01940.1|Name=NO24G01940.1|organism=Nannochloropsis oceanica|type=mRNA|length=366bp|location=Sequence derived from alignment at chr24:511333..511698+ (Nannochloropsis oceanica)
ATGCACCACAAACAAGGCACAGCGCCATACATACGATACGCAGGGCACAG
CGCCACACACAGCGGTATTTCACGAAGGGTTCAGCCCTCGGTAACGAAAG
CGTCCTCGACGGCGGTCATCATCACCTCTGGCGCCTGGCACAAAGGCGAC
TACTCCGGCAGCGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGG
CAGAAGTACAACAGCATTCCCAAAGTGTAGTCCCATCTCCAGCTCCAGCT
ATGGAGAAATCACCTGCACCATCGTGCCCCAGGTCTCCCCCCTCCCCTGC
TTCTGGACCACGGCGCTCGTCCTCCTTTTCCTCTCCCTCCCCCTCCTCTT
CCTCCTTTGCTCATGA
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Coding sequence (CDS) from alignment at chr24:511333..511698+

>NO24G01940.1 ID=NO24G01940.1|Name=NO24G01940.1|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at chr24:511333..511698+ (Nannochloropsis oceanica)
ATGCACCACAAACAAGGCACAGCGCCATACATACGATACGCAGGGCACAG
CGCCACACACAGCGGTATTTCACGAAGGGTTCAGCCCTCGGTAACGAAAG
CGTCCTCGACGGCGGTCATCATCACCTCTGGCGCCTGGCACAAAGGCGAC
TACTCCGGCAGCGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGG
CAGAAGTACAACAGCATTCCCAAAGTGTAGTCCCATCTCCAGCTCCAGCT
ATGGAGAAATCACCTGCACCATCGTGCCCCAGGTCTCCCCCCTCCCCTGC
TTCTGGACCACGGCGCTCGTCCTCCTTTTCCTCTCCCTCCCCCTCCTCTT
CCTCCTTTGCTCATGA
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Synonyms
Publications