NO24G01900.1, NO24G01900.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G01900.1
Unique Name	NO24G01900.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2284
Alignment location	chr24:503027..506367 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:503027..506367 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G01900.1 vs.
Match: CBN75026.1 (flagellar adenylate kinase [Ectocarpus siliculosus])

HSP 1 Score: 219.9 bits (559), Expect = 8.100e-54
Identity = 110/182 (60.44%), Postives = 142/182 (78.02%), Query Frame = 0

Query:   48 IVFVLGGPGAGKGTQCALLVERH--GLVHLSAGDLLREERNRGTELATMINTYIQEGKIVPAEVTVGLLRAAMEKAEGKTKFLIDGFPRDPGNLRCWIENMSDHAHT-KAVLYLNAPEEVMLQRLLERGKTSGRTDDNADSIKKRFKTYLESTMPIIQHFQAQGKVWEVQADRPLGEVSADV 227
            +VFVLGGPG+GKGTQCAL+ E    G  HLSAGDLLR ERN G+ELA MIN +I+EGKIVPAEVTVGLLR AMEK+ GK++FLIDGFPR+P NL  W  + +  A      L+L+ PEE+M +R++ERG++SGR DDN ++I+KR  TY ESTMPII+ F+A+GK+ EV +D+ + EV+ +V
Sbjct:   56 VVFVLGGPGSGKGTQCALIAEEEALGYAHLSAGDLLRAERNSGSELAGMINEFIREGKIVPAEVTVGLLRKAMEKS-GKSRFLIDGFPRNPDNLAAWEASTAGGAVVVDFALFLDCPEEIMTERIMERGRSSGRIDDNEEAIRKRLVTYRESTMPIIKEFEARGKLREVNSDQTIEEVAVEV 236

The following BLAST results are available for this feature:

BLAST of NO24G01900.1 vs.

BLAST of NO24G01900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CBN75026.1	8.100e-54	60.44	flagellar adenylate kinase [Ectocarpus siliculosus...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G01900	NO24G01900	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01900.1	NO24G01900.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G01900.1.cds1	NO24G01900.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01900.1.cds2	NO24G01900.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01900.1.cds3	NO24G01900.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01900.1.cds4	NO24G01900.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01900.1.cds5	NO24G01900.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G01900.1.cds6	NO24G01900.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:503027..506367-
coding sequence from alignment at chr24:503027..506367-

mRNA sequence

>NO24G01900.1 ID=NO24G01900.1|Name=NO24G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=2284bp
CTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCTTCTCCTCCA
CCACTTCTTCCGCCTCCAACCCTCCCGGCCCAAATCTCCCTCCACACGCC
ACGCATTCCCACACACCACCTTTCTCCCCGCCTCCTTGACTCATCAAGGG
CACATGACAGTCGGGACAACTCTCGGCACGCATCGTCCACCCGCTCAGCA
TTCTTTGTCCGATTATTGACGACGCGGCGTCGCGTCGTGCTTGCACTGTT
CGAGCAGCAGCGGCTGTGGCGATGGCGGCGTCAGTGTCTGTTGTGGTGAG
AGGAGTAGGGAGGAAGTTGCTGCTGCTGCTGCTGCTGCTTATGGTGGTGG
TGGTCGTGGTAGCAGTGGTGGGTGTGGTACAAAAAGGAGTGACAATGACA
GGGGTTTCTGAGACGGCCGATGTGGGTGGCACCACGACGGAGGGAGGAGG
AGAACAAGAGACTTGATTGGCAGAAGCAACGGCAGGAACAGCCGCAGTAC
CAGGAGGAACAGCAGCGCTCAAGGGAGGGGGTAAGGTCTCCCCTTCCCTC
AGGACTGGGGCTTGACATGCGACGCAAAATAAATGCTGACCATCTGAGAG
AGGGGAGGCGACCAAGGGGGTTTTGCATCCAGGTATGGGACAGATGTCAG
AGGTAAGTTTCCAGCCCTCTTGCAACCGCTGGGCAATGTCGGTCATGATG
CGTTGCTTGTTGGAGTGGCAGGGGGACGGGGAAGAAGGGGTGGGCTGTTG
AGGGTTGGAGAGAAAGGCGACGGGGACACGGGGGGAGGTCGCCATTGGTG
TTGCTGTGGAGAGGACGTGCGGCGGATGGTAATGTTACTGTTTTGGGGGA
ATGGGTTGGGAGGGAGGGGAGGGTGGATACAGACTCGGTGGAGGGCGCAT
TCGGCGGAAGAGCTCGATAAAGATGATGGTACTGTTCAAAGGGCTGTCTC
GATGTATGATACAGTGGGTGGAGAGTGGTGTGTGGTGTGTGGTTGACTGG
AAGGAGGGGGGAAAAAAGGTCACCACAGGGGAGGTCGCCGTCCACTGTGG
CACGAACGTCTCACGGTGGCTCATGTCCTCGACTGTTGTTCCGTCACCCT
ATTTTTCCCCGCTGCCCGTTTCACCAAGGCCACTCATCACACCGACGTCT
ACACATAGGCACAGGGCAGGACACGGGTAGTGGTAGTTGCTGTAGGAGCC
GCCATCGTCCGTTCATGGCCATGACTCCCTTTACCCTTTCCAAGAGGCAG
TTGCCGCTCCTGGCGACAGCAGCAGTTATCGTTCTAGGTGGGGCTGCCGC
TGCGTTGTACCTGAGCAGGAAGAAGAAAAAGGCGGAGAAGCGACTCAAAT
ATGAAATTGTCTTCGTCCTCGGCGGCCCTGGCGCGGGCAAGGGCACGCAA
TGTGCCCTCCTAGTGGAACGTCACGGCCTCGTCCACCTGTCTGCTGGCGA
CTTGTTAAGAGAGGAAAGGAACAGGGGGACGGAGCTCGCGACGATGATTA
ATACGTACATTCAGGAGGGGAAAATCGTCCCTGCTGAGGTGACGGTGGGA
TTACTAAGGGCGGCGATGGAGAAGGCGGAGGGCAAGACCAAGTTCCTCAT
CGATGGCTTTCCCCGGGACCCGGGTAATCTCAGGTGCTGGATCGAGAACA
TGAGCGACCACGCGCACACCAAGGCCGTCCTCTACCTTAATGCTCCCGAG
GAGGTGATGCTTCAGCGGCTCCTAGAGCGAGGGAAGACCAGCGGCAGGAC
CGACGACAACGCTGACAGCATCAAGAAACGCTTCAAAACCTACCTAGAGA
GCACCATGCCCATTATTCAACATTTCCAAGCACAGGGGAAAGTGTGGGAG
GTTCAAGCTGACAGACCCCTCGGCGAAGTGTCTGCCGACGTATTTGCTCG
GTTTGACACATGGTAAGGGGGAGGGAGAGAGGGAGGGAGAGCGAGAAACA
TCAAGAGAGAAAGATAGCAAGAAACAGCGAGAGGGAGTATTTGTTTTATA
CTTGGGAGGCAGGGAAGAAGGGAGGGGGGGAGGGAAGTGAAAAGGGAAGG
AAGAAGTGAGGGAGGGAGGAAGGGAAAGGAAGGAGGGAACTGCGTGAAGT
GGCTCCACGGGGCACAAGAGTCCGGGTAAAAAGAAAATGAATCGAAAGCA
CATTGGCCTGAAGAGTGAAAGGATTCACACGCATGTCGTATCAATCGACT
CGTATCCTCTTTTCCTCCCTTTTTCGTGGTGCAGATTATCTGCATTGGTG
TGGCCCTCCCTCCTTCCCTCCCTCCCTCTCTCCC

protein sequence of NO24G01900.1

>NO24G01900.1-protein ID=NO24G01900.1-protein|Name=NO24G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MAMTPFTLSKRQLPLLATAAVIVLGGAAAALYLSRKKKKAEKRLKYEIVF
VLGGPGAGKGTQCALLVERHGLVHLSAGDLLREERNRGTELATMINTYIQ
EGKIVPAEVTVGLLRAAMEKAEGKTKFLIDGFPRDPGNLRCWIENMSDHA
HTKAVLYLNAPEEVMLQRLLERGKTSGRTDDNADSIKKRFKTYLESTMPI
IQHFQAQGKVWEVQADRPLGEVSADVFARFDTW*

mRNA from alignment at chr24:503027..506367-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G01900.1 ID=NO24G01900.1|Name=NO24G01900.1|organism=Nannochloropsis oceanica|type=mRNA|length=3341bp|location=Sequence derived from alignment at chr24:503027..506367- (Nannochloropsis oceanica)
CTCCTCCTCCTCCTCCTCCTCCTCTTCTTCCTCCTCCTCCTTCTCCTCCA
CCACTTCTTCCGCCTCCAACCCTCCCGGCCCAAATCTCCCTCCACACGCC
ACGCATTCCCACACACCACCTTTCTCCCCGCCTCCTTGACTCATCAAGGG
CACATGACAGTCGGGACAACTCTCGGCACGCATCGTCCACCCGCTCAGCA
TTCTTTGTCCGATTATTGACGACGCGGCGTCGCGTCGTGCTTGCACTGTT
CGAGCAGCAGCGGCTGTGGCGATGGCGGCGTCAGTGTCTGTTGTGGTGAG
AGGAGTAGGGAGGAAGTTGCTGCTGCTGCTGCTGCTGCTTATGGTGGTGG
TGGTCGTGGTAGCAGTGGTGGGTGTGGTACAAAAAGGAGTGACAATGACA
GGGGTTTCTGAGACGGCCGATGTGGGTGGCACCACGACGGAGGGAGGAGG
AGAACAAGAGACTTGATTGGCAGAAGCAACGGCAGGAACAGCCGCAGTAC
CAGGAGGAACAGCAGCGCTCAAGGGAGGGGGTAAGGTCTCCCCTTCCCTC
AGGACTGGGGCTTGACATGCGACGCAAAATAAATGCTGACCATCTGAGAG
AGGGGAGGCGACCAAGGGGGTTTTGCATCCAGGTATGGGACAGATGTCAG
AGGTAAGTTTCCAGCCCTCTTGCAACCGCTGGGCAATGTCGGTCATGATG
CGTTGCTTGTTGGAGTGGCAGGGGGACGGGGAAGAAGGGGTGGGCTGTTG
AGGGTTGGAGAGAAAGGCGACGGGGACACGGGGGGAGGTCGCCATTGGTG
TTGCTGTGGAGAGGACGTGCGGCGGATGGTAATGTTACTGTTTTGGGGGA
ATGGGTTGGGAGGGAGGGGAGGGTGGATACAGACTCGGTGGAGGGCGCAT
TCGGCGGAAGAGCTCGATAAAGATGATGGTACTGTTCAAAGGGCTGTCTC
GATGTATGATACAGTGGGTGGAGAGTGGTGTGTGGTGTGTGGTTGACTGG
AAGGAGGGGGGAAAAAAGGTCACCACAGGGGAGGTCGCCGTCCACTGTGG
CACGAACGTCTCACGGTGGCTCATGTCCTCGACTGTTGTTCCGTCACCCT
ATTTTTCCCCGCTGCCCGTTTCACCAAGGCCACTCATCACACCGACGTCT
ACACATAGGCACAGGGCAGGACACGGGTAGTGGTAGTTGCTGTAGGAGCC
GCCATCGTCCGTTCATGGCCATGACTCCCTTTACCCTTTCCAAGAGGCAG
TTGCCGCTCCTGGCGACAGCAGCAGTTATCGTTCTAGGTGGGGCTGCCGC
TGCGTTGTACCTGAGCAGGAAGAAGAAAAAGGCGGAGAAGCGACTGTACG
TGCCATTGTATAGGAAGGGAGGTGTGGAGTCAGGTGGGACAGGAGGCTAG
GAAATGCTTCCTGCGACTTCGGTTCAGAGGGAGGCATGTATGTGGCAAGA
GTGCCTCGCGGCAAACGGCCAGAGTGGCCTTGTTTTGCCCGCTTGCTTGC
TTGTCTGAAGATAGAGGGGTGTGTCGCTATATATACGCCAGCCTTGCGAG
CGGGACGGAGGCATCGTCTACCCACGTGGCTGGGTCATGCATTTCTCGCC
TCACACTTCATTTCATCCCTTCCTTCCTCCCTCCCTCCCTCCCTCTCTCC
CTCTGGTTCATCCCCGACCCAAACAACCAGCAAATATGAAATTGTCTTCG
TCCTCGGCGGCCCTGGCGCGGGCAAGGGCACGCAATGTGCCCTCCTAGTG
GAACGTCACGGCCTCGTCCACCTGTCTGCTGGCGACTTGTTAAGAGAGGA
AAGGAACAGGGGGACGGAGCTCGCGACGATGATTAATACGTACATTCAGG
AGGGGAAAATCGTCCCTGCTGAGGTGACGGTGGGATTACTAAGGTAGGAA
GGGAGGGAGGGAAGGAGGGGAGGAGTGAGGGAGGGGGGGATTTAGGAGAA
GTCAATATGATGCTAAAGAGGAAATTAATGAGTCACCCCTCCTTCTCTCC
CTTCCTCCTCCTCCTCCTTTCTCTCCCTCAACCACATACAGGGCGGCGAT
GGAGAAGGCGGAGGGCAAGACCAAGTTCCTCATCGATGGCTTTCCCCGGG
ACCCGGGTAATCTCAGGTAAGTAGGGAGGGAGGGAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGCAAGTGAGAAACATCTAGAAGGCACAG
ATGGTGCGGAGCATTCCCTGAGGGAAGAGGGAAAGAAAGAGGGAGGAAGT
GAGAGAGAGAAAGAGAGAAGGAGAGAAGGGAGCCATCAAGAATATAAAAG
AAAAGTTGCCATAATACTGATCCATCCTTCCCTCCCTCCCTCCCTTCCTT
CCTTCAGGTGCTGGATCGAGAACATGAGCGACCACGCGCACACCAAGGCC
GTCCTCTACCTTAATGCTCCCGAGGAGGTGATGCTTCAGCGGCTCCTAGA
GCGAGGGAAGACCAGCGGCAGGACCGACGACAACGCTGACAGCATCAAGA
AACGGTTAAGGCCCCTCCCTCCCTCCCTCCCTCGCAGCCTCCTTCCCTTG
CTTCCCCCTTCTGTCCATTCCTCTCCACCTTGGGCTCAGCAACCACTCCT
CCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCCCCCAGCTTCA
AAACCTACCTAGAGAGCACCATGCCCATTATTCAACATTTCCAAGCACAG
GGGAAAGTGTGGGAGGTTCAAGCTGACAGACCCCTCGGTACGTCCCCCCT
CTATCTTTCCCCTCCCTTCCTCCCCTCCTTCCCACGATCCTTCCCTTGTT
TTGTTGTGAGCAGAGAAGGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AAGGAGAAAGAGGACATGGCGGCCTAGTCAGGGGTAGTTGCTCTCTCTTA
CATCCTCCCCTCCCTCCCTCCCTCGACAGGCGAAGTGTCTGCCGACGTAT
TTGCTCGGTTTGACACATGGTAAGGGGGAGGGAGAGAGGGAGGGAGAGCG
AGAAACATCAAGAGAGAAAGATAGCAAGAAACAGCGAGAGGGAGTATTTG
TTTTATACTTGGGAGGCAGGGAAGAAGGGAGGGGGGGAGGGAAGTGAAAA
GGGAAGGAAGAAGTGAGGGAGGGAGGAAGGGAAAGGAAGGAGGGAACTGC
GTGAAGTGGCTCCACGGGGCACAAGAGTCCGGGTAAAAAGAAAATGAATC
GAAAGCACATTGGCCTGAAGAGTGAAAGGATTCACACGCATGTCGTATCA
ATCGACTCGTATCCTCTTTTCCTCCCTTTTTCGTGGTGCAGATTATCTGC
ATTGGTGTGGCCCTCCCTCCTTCCCTCCCTCCCTCTCTCCC

Coding sequence (CDS) from alignment at chr24:503027..506367-

>NO24G01900.1 ID=NO24G01900.1|Name=NO24G01900.1|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at chr24:503027..506367- (Nannochloropsis oceanica)
ATGGCCATGACTCCCTTTACCCTTTCCAAGAGGCAGTTGCCGCTCCTGGC
GACAGCAGCAGTTATCGTTCTAGGTGGGGCTGCCGCTGCGTTGTACCTGA
GCAGGAAGAAGAAAAAGGCGGAGAAGCGACTCAAATATGAAATTGTCTTC
GTCCTCGGCGGCCCTGGCGCGGGCAAGGGCACGCAATGTGCCCTCCTAGT
GGAACGTCACGGCCTCGTCCACCTGTCTGCTGGCGACTTGTTAAGAGAGG
AAAGGAACAGGGGGACGGAGCTCGCGACGATGATTAATACGTACATTCAG
GAGGGGAAAATCGTCCCTGCTGAGGTGACGGTGGGATTACTAAGGGCGGC
GATGGAGAAGGCGGAGGGCAAGACCAAGTTCCTCATCGATGGCTTTCCCC
GGGACCCGGGTAATCTCAGGTGCTGGATCGAGAACATGAGCGACCACGCG
CACACCAAGGCCGTCCTCTACCTTAATGCTCCCGAGGAGGTGATGCTTCA
GCGGCTCCTAGAGCGAGGGAAGACCAGCGGCAGGACCGACGACAACGCTG
ACAGCATCAAGAAACGCTTCAAAACCTACCTAGAGAGCACCATGCCCATT
ATTCAACATTTCCAAGCACAGGGGAAAGTGTGGGAGGTTCAAGCTGACAG
ACCCCTCGGCGAAGTGTCTGCCGACGTATTTGCTCGGTTTGACACATGGT
AA

Synonyms

Publications