NO24G01710.1, NO24G01710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01710.1
Unique NameNO24G01710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length468
Alignment locationchr24:459030..459497 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:459030..459497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01710.1 vs.
Match: EWM24381.1 (guanine deaminase [Nannochloropsis gaditana])

HSP 1 Score: 215.7 bits (548), Expect = 1.000e-52
Identity = 110/149 (73.83%), Postives = 123/149 (82.55%), Query Frame = 0 
Query:    1 MLSAVRSCVIASRVLEDGVEEWRHGEEV-DEEGEKIKCERQEKIQNEGMAEGGKEMWCKSGRDGMRIDWKEALWLATMGGAGCLGLEDEVGSFEVGKAFDAVRIDVKKGGGVVVVEGGRDSAEDLVQKWVNCGDDRHVIEVWVAGREVK 149
            MLSA+RSCV+ASR LEDGVEEWRHGEE  D EG+K           EG  +GG E WCK GR+GMRIDWKEALWLATMGGA CLGLE+EVGS+ VGKAFDAVR+DVKKGG VVV+EGG DSAEDLV+KWVN GDDRHV+EV+V GRE+K
Sbjct:  380 MLSAIRSCVLASRALEDGVEEWRHGEEEGDREGKK-----------EGGKQGG-EQWCKEGREGMRIDWKEALWLATMGGAECLGLEEEVGSWAVGKAFDAVRVDVKKGGAVVVLEGGGDSAEDLVEKWVNNGDDRHVLEVYVVGREIK 516
The following BLAST results are available for this feature:
BLAST of NO24G01710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24381.11.000e-5273.83guanine deaminase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01710NO24G01710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01710.1NO24G01710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01710.1.cds1NO24G01710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01710.1 ID=NO24G01710.1|Name=NO24G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=468bp
ATGTTAAGTGCAGTGAGATCGTGCGTGATCGCCTCGAGAGTGCTGGAGGA
TGGAGTAGAGGAGTGGAGGCACGGAGAAGAGGTAGACGAGGAGGGGGAAA
AGATAAAATGTGAGCGACAGGAGAAGATACAAAATGAGGGGATGGCGGAG
GGAGGGAAAGAGATGTGGTGTAAATCTGGGAGGGACGGCATGCGGATTGA
TTGGAAAGAGGCTCTGTGGTTGGCGACGATGGGAGGTGCGGGTTGCTTGG
GGCTGGAGGACGAAGTCGGAAGCTTTGAGGTGGGGAAAGCATTTGATGCT
GTTCGAATAGATGTCAAAAAGGGTGGAGGGGTGGTCGTAGTGGAGGGAGG
GCGAGATAGCGCGGAGGATTTGGTCCAGAAGTGGGTAAATTGTGGCGATG
ATAGGCATGTGATTGAGGTGTGGGTGGCCGGGAGGGAGGTCAAGAAAGTC
AACCAACAAGAAAAATAG
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protein sequence of NO24G01710.1

>NO24G01710.1-protein ID=NO24G01710.1-protein|Name=NO24G01710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MLSAVRSCVIASRVLEDGVEEWRHGEEVDEEGEKIKCERQEKIQNEGMAE
GGKEMWCKSGRDGMRIDWKEALWLATMGGAGCLGLEDEVGSFEVGKAFDA
VRIDVKKGGGVVVVEGGRDSAEDLVQKWVNCGDDRHVIEVWVAGREVKKV
NQQEK*
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mRNA from alignment at chr24:459030..459497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01710.1 ID=NO24G01710.1|Name=NO24G01710.1|organism=Nannochloropsis oceanica|type=mRNA|length=468bp|location=Sequence derived from alignment at chr24:459030..459497- (Nannochloropsis oceanica)
ATGTTAAGTGCAGTGAGATCGTGCGTGATCGCCTCGAGAGTGCTGGAGGA
TGGAGTAGAGGAGTGGAGGCACGGAGAAGAGGTAGACGAGGAGGGGGAAA
AGATAAAATGTGAGCGACAGGAGAAGATACAAAATGAGGGGATGGCGGAG
GGAGGGAAAGAGATGTGGTGTAAATCTGGGAGGGACGGCATGCGGATTGA
TTGGAAAGAGGCTCTGTGGTTGGCGACGATGGGAGGTGCGGGTTGCTTGG
GGCTGGAGGACGAAGTCGGAAGCTTTGAGGTGGGGAAAGCATTTGATGCT
GTTCGAATAGATGTCAAAAAGGGTGGAGGGGTGGTCGTAGTGGAGGGAGG
GCGAGATAGCGCGGAGGATTTGGTCCAGAAGTGGGTAAATTGTGGCGATG
ATAGGCATGTGATTGAGGTGTGGGTGGCCGGGAGGGAGGTCAAGAAAGTC
AACCAACAAGAAAAATAG
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Coding sequence (CDS) from alignment at chr24:459030..459497-

>NO24G01710.1 ID=NO24G01710.1|Name=NO24G01710.1|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at chr24:459030..459497- (Nannochloropsis oceanica)
ATGTTAAGTGCAGTGAGATCGTGCGTGATCGCCTCGAGAGTGCTGGAGGA
TGGAGTAGAGGAGTGGAGGCACGGAGAAGAGGTAGACGAGGAGGGGGAAA
AGATAAAATGTGAGCGACAGGAGAAGATACAAAATGAGGGGATGGCGGAG
GGAGGGAAAGAGATGTGGTGTAAATCTGGGAGGGACGGCATGCGGATTGA
TTGGAAAGAGGCTCTGTGGTTGGCGACGATGGGAGGTGCGGGTTGCTTGG
GGCTGGAGGACGAAGTCGGAAGCTTTGAGGTGGGGAAAGCATTTGATGCT
GTTCGAATAGATGTCAAAAAGGGTGGAGGGGTGGTCGTAGTGGAGGGAGG
GCGAGATAGCGCGGAGGATTTGGTCCAGAAGTGGGTAAATTGTGGCGATG
ATAGGCATGTGATTGAGGTGTGGGTGGCCGGGAGGGAGGTCAAGAAAGTC
AACCAACAAGAAAAATAG
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Synonyms
Publications