NO24G01700.1, NO24G01700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01700.1
Unique NameNO24G01700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr24:457418..458977 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:457418..458977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01700.1 vs.
Match: XP_005855544.1 (nicotinate-nucleotide pyrophosphorylase (carboxylating), partial [Nannochloropsis gaditana CCMP526]; EKU20810.1 nicotinate-nucleotide pyrophosphorylase (carboxylating), partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 479.2 bits (1232), Expect = 9.800e-132
Identity = 236/306 (77.12%), Postives = 263/306 (85.95%), Query Frame = 0 
Query:    4 ISEALPPWKVTQAVESWLEEDVPSMDIGGFVVGEAPTTAFLYGKSQGVLCGKPFFDAVFKALDCTVEWKEGMEDGVLLSPPSCSSSNSCSTAAG--------GMKVHVATISGKARHILLGERTALNILTRASGIATLTRESVEVGRKAGWHGAVAGTRKTTPGFRLVEKYALLVGGAATHRHDLSQMVMLKDNHVWSTGSITKAVKSARSVGGFSIKIEVECQSLPQALEAGTAGADIIMLDNFVPAQLKETAAEVKKAFPHVTIEASGGITSETLHLFFSPHVDVISRGNLTQGYPALDFSLKV 302
            I++ALPPW+VT+AV  WLEEDVPSMDIGGFVVGE PTTA LYGKS+G+LCGK FFDAVFKALDCTVEW EGMEDG +LSPP  S + +               +KVHVAT+ GKARHILLGERTALNILTRASGIAT++R SV++GR+AGWHG +AGTRKTTPGFR+VEKYALL+GGAATHR DLSQMVMLKDNHVWSTGSITKAVK+AR VG FSIKIEVECQ+L QA EAG AGAD+IMLDNF P QLKETAA VK  +PHV IEASGGIT+ETL  +FSPHVDVISRG+LTQGYPALDFSLK+
Sbjct:   49 IAQALPPWQVTRAVLGWLEEDVPSMDIGGFVVGETPTTALLYGKSKGILCGKVFFDAVFKALDCTVEWMEGMEDGAVLSPPVPSKATTYPNQGKQDETDREQSIKVHVATVKGKARHILLGERTALNILTRASGIATISRASVDIGRRAGWHGTIAGTRKTTPGFRMVEKYALLIGGAATHRQDLSQMVMLKDNHVWSTGSITKAVKAARGVGSFSIKIEVECQTLSQAQEAGAAGADVIMLDNFAPPQLKETAALVKSQYPHVVIEASGGITTETLEEYFSPHVDVISRGSLTQGYPALDFSLKI 354
The following BLAST results are available for this feature:
BLAST of NO24G01700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855544.19.800e-13277.12nicotinate-nucleotide pyrophosphorylase (carboxyla... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01700NO24G01700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01700.1NO24G01700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01700.1.cds1NO24G01700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01700.1.cds2NO24G01700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01700.1 ID=NO24G01700.1|Name=NO24G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp
CACGGACAGGCGAGACTTGAGAGCGTGGCGTGCACTAAATTAAAGGCGCC
CGAACGAGCACTCATAAAACCTCCTCATCCCTGATAAGACAACACGTACC
GCTCTACCCCGCCACACCAACACGCTAGCATGGCAAGAATATCAGAAGCC
CTGCCCCCTTGGAAAGTGACTCAGGCTGTCGAAAGCTGGCTGGAAGAGGA
CGTGCCGAGTATGGATATTGGGGGCTTTGTGGTCGGCGAGGCCCCCACTA
CCGCCTTCCTCTACGGTAAGTCCCAAGGTGTCTTGTGTGGCAAACCGTTC
TTCGACGCTGTCTTCAAAGCCTTAGACTGCACGGTCGAATGGAAGGAAGG
GATGGAGGATGGGGTTTTGCTCTCTCCTCCTTCATGCAGCAGCAGCAACA
GTTGCAGTACTGCAGCAGGAGGAATGAAGGTCCATGTTGCGACTATCAGC
GGGAAGGCCCGGCATATCTTGCTAGGGGAGAGGACGGCATTAAATATTCT
TACTAGGGCTAGTGGTATTGCCACACTAACGAGGGAATCGGTGGAGGTTG
GGCGAAAGGCAGGATGGCATGGAGCTGTCGCGGGGACCCGAAAGACCACC
CCGGGCTTTCGTCTCGTTGAAAAATACGCCTTGTTGGTTGGAGGGGCTGC
GACACACCGGCATGACTTAAGTCAGATGGTCATGTTGAAGGATAATCATG
TCTGGAGCACCGGGAGTATCACCAAGGCTGTCAAGAGCGCTCGGAGCGTG
GGGGGGTTCTCCATTAAGATTGAGGTGGAGTGTCAATCCCTCCCTCAAGC
CCTCGAAGCTGGGACAGCCGGCGCTGATATCATCATGCTAGATAATTTTG
TTCCAGCGCAGTTGAAGGAAACAGCAGCAGAGGTAAAGAAGGCATTCCCA
CATGTAACGATTGAGGCGTCAGGGGGTATCACCAGTGAGACACTGCATTT
GTTTTTCTCGCCGCATGTGGATGTGATCAGTCGGGGGAATCTGACACAGG
GCTATCCTGCATTAGACTTCTCGTTGAAAGTGCAGCAGACACAGCAGCAG
TAGGTGTAACTGGAGATTAAAAAATACATAAAGTGCTTTTCTCCCGTGTG
ACACGGGAGGTTTCTGAGGAAGGGCATTGCACTAAAAAGTTTTACCTGCA
CTGAGAAACTGCCTGCCGTCTTCGCCGTATATGGATGCGGCAAAAAACTT
GTCTACCACATTACTGTCATGCATTATACTGGCCATTGAGGTGGTTTTTG
GCACAGAGGCAGCAGTAGAAAGAGACATATAGGCTTGAATGATACACACG
GACTAGAAAGAGGCGGAAAATGAAAAATATGTATGAATCAGAAAACTTCA
CA
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protein sequence of NO24G01700.1

>NO24G01700.1-protein ID=NO24G01700.1-protein|Name=NO24G01700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=308bp
MARISEALPPWKVTQAVESWLEEDVPSMDIGGFVVGEAPTTAFLYGKSQG
VLCGKPFFDAVFKALDCTVEWKEGMEDGVLLSPPSCSSSNSCSTAAGGMK
VHVATISGKARHILLGERTALNILTRASGIATLTRESVEVGRKAGWHGAV
AGTRKTTPGFRLVEKYALLVGGAATHRHDLSQMVMLKDNHVWSTGSITKA
VKSARSVGGFSIKIEVECQSLPQALEAGTAGADIIMLDNFVPAQLKETAA
EVKKAFPHVTIEASGGITSETLHLFFSPHVDVISRGNLTQGYPALDFSLK
VQQTQQQ*
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mRNA from alignment at chr24:457418..458977+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01700.1 ID=NO24G01700.1|Name=NO24G01700.1|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp|location=Sequence derived from alignment at chr24:457418..458977+ (Nannochloropsis oceanica)
CACGGACAGGCGAGACTTGAGAGCGTGGCGTGCACTAAATTAAAGGCGCC
CGAACGAGCACTCATAAAACCTCCTCATCCCTGATAAGACAACACGTACC
GCTCTACCCCGCCACACCAACACGCTAGCATGGCAAGAATATCAGAAGCC
CTGCCCCCTTGGAAAGTGACTCAGGCTGTCGAAAGCTGGCTGGAAGAGGA
CGTGCCGAGTATGGATATTGGGGGCTTTGTGGTCGGCGGTAAGTTAAGGG
GATCCTGCGTTGCTTACATACAAGTTAGCGTTGAGGGGCCGCGCTGTTTT
CAGTTCTTCTCCCTGTTTCCCGTATTTGGTTTGCTTCCTTTCTTGAGCCT
TCTTATGTCTGAAGCTTCTGTTGCAGTCCCGCTAGTCTCTCCAAGGCGCT
GTCCTTCCATTGACCCCATCCTCCCTCGTTCCTTCCCTTCCTGCAGAGGC
CCCCACTACCGCCTTCCTCTACGGTAAGTCCCAAGGTGTCTTGTGTGGCA
AACCGTTCTTCGACGCTGTCTTCAAAGCCTTAGACTGCACGGTCGAATGG
AAGGAAGGGATGGAGGATGGGGTTTTGCTCTCTCCTCCTTCATGCAGCAG
CAGCAACAGTTGCAGTACTGCAGCAGGAGGAATGAAGGTCCATGTTGCGA
CTATCAGCGGGAAGGCCCGGCATATCTTGCTAGGGGAGAGGACGGCATTA
AATATTCTTACTAGGGCTAGTGGTATTGCCACACTAACGAGGGAATCGGT
GGAGGTTGGGCGAAAGGCAGGATGGCATGGAGCTGTCGCGGGGACCCGAA
AGACCACCCCGGGCTTTCGTCTCGTTGAAAAATACGCCTTGTTGGTTGGA
GGGGCTGCGACACACCGGCATGACTTAAGTCAGATGGTCATGTTGAAGGA
TAATCATGTCTGGAGCACCGGGAGTATCACCAAGGCTGTCAAGAGCGCTC
GGAGCGTGGGGGGGTTCTCCATTAAGATTGAGGTGGAGTGTCAATCCCTC
CCTCAAGCCCTCGAAGCTGGGACAGCCGGCGCTGATATCATCATGCTAGA
TAATTTTGTTCCAGCGCAGTTGAAGGAAACAGCAGCAGAGGTAAAGAAGG
CATTCCCACATGTAACGATTGAGGCGTCAGGGGGTATCACCAGTGAGACA
CTGCATTTGTTTTTCTCGCCGCATGTGGATGTGATCAGTCGGGGGAATCT
GACACAGGGCTATCCTGCATTAGACTTCTCGTTGAAAGTGCAGCAGACAC
AGCAGCAGTAGGTGTAACTGGAGATTAAAAAATACATAAAGTGCTTTTCT
CCCGTGTGACACGGGAGGTTTCTGAGGAAGGGCATTGCACTAAAAAGTTT
TACCTGCACTGAGAAACTGCCTGCCGTCTTCGCCGTATATGGATGCGGCA
AAAAACTTGTCTACCACATTACTGTCATGCATTATACTGGCCATTGAGGT
GGTTTTTGGCACAGAGGCAGCAGTAGAAAGAGACATATAGGCTTGAATGA
TACACACGGACTAGAAAGAGGCGGAAAATGAAAAATATGTATGAATCAGA
AAACTTCACA
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Coding sequence (CDS) from alignment at chr24:457418..458977+

>NO24G01700.1 ID=NO24G01700.1|Name=NO24G01700.1|organism=Nannochloropsis oceanica|type=CDS|length=924bp|location=Sequence derived from alignment at chr24:457418..458977+ (Nannochloropsis oceanica)
ATGGCAAGAATATCAGAAGCCCTGCCCCCTTGGAAAGTGACTCAGGCTGT
CGAAAGCTGGCTGGAAGAGGACGTGCCGAGTATGGATATTGGGGGCTTTG
TGGTCGGCGAGGCCCCCACTACCGCCTTCCTCTACGGTAAGTCCCAAGGT
GTCTTGTGTGGCAAACCGTTCTTCGACGCTGTCTTCAAAGCCTTAGACTG
CACGGTCGAATGGAAGGAAGGGATGGAGGATGGGGTTTTGCTCTCTCCTC
CTTCATGCAGCAGCAGCAACAGTTGCAGTACTGCAGCAGGAGGAATGAAG
GTCCATGTTGCGACTATCAGCGGGAAGGCCCGGCATATCTTGCTAGGGGA
GAGGACGGCATTAAATATTCTTACTAGGGCTAGTGGTATTGCCACACTAA
CGAGGGAATCGGTGGAGGTTGGGCGAAAGGCAGGATGGCATGGAGCTGTC
GCGGGGACCCGAAAGACCACCCCGGGCTTTCGTCTCGTTGAAAAATACGC
CTTGTTGGTTGGAGGGGCTGCGACACACCGGCATGACTTAAGTCAGATGG
TCATGTTGAAGGATAATCATGTCTGGAGCACCGGGAGTATCACCAAGGCT
GTCAAGAGCGCTCGGAGCGTGGGGGGGTTCTCCATTAAGATTGAGGTGGA
GTGTCAATCCCTCCCTCAAGCCCTCGAAGCTGGGACAGCCGGCGCTGATA
TCATCATGCTAGATAATTTTGTTCCAGCGCAGTTGAAGGAAACAGCAGCA
GAGGTAAAGAAGGCATTCCCACATGTAACGATTGAGGCGTCAGGGGGTAT
CACCAGTGAGACACTGCATTTGTTTTTCTCGCCGCATGTGGATGTGATCA
GTCGGGGGAATCTGACACAGGGCTATCCTGCATTAGACTTCTCGTTGAAA
GTGCAGCAGACACAGCAGCAGTAG
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Synonyms
Publications