Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr24 genome chr24:427515..429702 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01600.1 vs.
Match: XP_008864352.1 (hypothetical protein H310_02572 [Aphanomyces invadans]; ETW06277.1 hypothetical protein H310_02572 [Aphanomyces invadans])
HSP 1 Score: 252.3 bits (643), Expect = 2.900e-63
Identity = 161/437 (36.84%), Postives = 240/437 (54.92%), Query Frame = 0
Query: 25 PKETVYHYGFNQDASCVALGSSRGFSVFNTHPFRPSLHESVGGVGIVEMLYCTSLLALVGAGDQAGFSPRCLKIWNTKRQSSLFDVAFMSKIVGVRLNRRRLVVALERALYIFGLEKMEKLQELEMGENRGGLLALSAREEPSYLAYP-GHEPGVVLLHDVLSLRLINKITAHKTKLAALALSLDGSLLATASVTGTVIRVMSVPEGRWLYTLRRGRSSCTIFSLAFNHAGTRLAASSDKGTVHIFHLSSSSSSSSDTVPRSPITLQSNGSSIPASSSFSSSFSSNEAPSFPPPSFPPCSSPTTTTGLLSFSPHSRLPTFSLSSLGVPKQVTDVVMGVEGTRSFAQARLKTHSINNNKEGGKWEKNVCALIPSRGGSGLGREGGREEGETLVVLTAEGHCYQYAVDVREGGVCRLVDEKTMLQEESGSQAVAQRLLS 461
P +V + FNQDA+C+++G+ +GF V++ PF S ++ GG+G+ EML+ +SL+ LVGAG+Q FSPR L++WNTK +++ D+ F++ ++GV+LNR+RLVV LE+ +YIF + M+ L L+ N L LS + YLA+P G G ++L+D ++L ++N + AH+ ALA++ G+LLATAS TGT++RV VP G T RRG TI+SLAFN T L SSD GT+HIF L+ + S+++ + SPI P ++S + P+ + P S P T GL S+ P S V EG R FA ARL+T ++ N+CAL GS ++V T +G YQY+ D+ GG C L E+ + +S S+ + LS
Sbjct: 10 PDSSVLYVSFNQDATCISVGTRQGFFVYSCEPFGRSFQDAAGGIGLAEMLFSSSLIVLVGAGEQPAFSPRRLRVWNTKTSAAICDLNFVTAVLGVQLNRQRLVVVLEKKIYIFDINSMQVLNTLDTSSNPKALCVLSPADN-GYLAFPAGGVAGEIVLYDAINLSVLNAVQAHRGMPVALAMNATGTLLATASDTGTILRVFDVPSGTKRATFRRGSYPATIYSLAFNPTSTLLCCSSDTGTIHIFSLTGAESAATGSYTLSPIL-------APVTASL-------DVPATAAQTAPSGSKPAKTGGLRSYLPSS------------------VSRIAEGARDFAYARLRTPNM----------PNLCALKGPAPGS---------HHVQVLVATMDGLFYQYSFDMTTGGECVL--EREHMLRDSASEEIQAMYLS 392
The following BLAST results are available for this feature:
BLAST of NO24G01600.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 Expect = 2.90e-63 / Id = 36.84 Sequence XP_008864352.1
Match Name E-value Identity Description
XP_008864352.1 2.900e-63 36.84 hypothetical protein H310_02572 [Aphanomyces invad... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO24G01600.1 ID=NO24G01600.1|Name=NO24G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp GCCGCATTCTCATGATCAAGATTCCTCAGAACTAAAGCACCCACGACTCG AAACACATAAAACCACACGCAGGAGACCAGGAAGTGCACGGTGACTATGA TTCTGGGTGGGGGTAGTCGCAGCGGGGCTGGGAGTAGAGGAAACAGCAGC AGCGGCGGCTCGCGAGGTCCAAAGGAGACGGTCTACCACTACGGCTTCAA CCAAGATGCAAGTTGTGTCGCCCTTGGATCCTCTCGTGGGTTCTCCGTCT TCAACACTCACCCTTTCCGCCCTTCCCTTCACGAGAGCGTGGGTGGGGTA GGAATTGTCGAGATGTTGTATTGCACCTCTCTGTTGGCATTGGTAGGAGC AGGGGACCAAGCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAATACCA AACGACAATCCTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTGTGGGA GTGAGATTGAACAGACGACGGTTGGTGGTGGCACTGGAGCGCGCTTTGTA TATTTTTGGGTTGGAAAAGATGGAGAAATTGCAAGAGCTGGAGATGGGGG AAAATAGGGGTGGCTTGCTGGCCTTATCGGCACGGGAGGAGCCTAGCTAT CTGGCCTACCCCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGACGTCCT CTCCCTTCGCCTCATCAACAAGATTACCGCGCACAAGACAAAGTTGGCGG CCCTGGCGCTCTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCGGTGACG GGGACAGTAATTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTTGTACAC ACTGAGGCGAGGTCGATCTTCCTGTACTATCTTCTCTCTCGCCTTCAACC ACGCTGGCACCCGGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCATATA TTCCACCTTTCCTCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTCGTTC TCCCATCACCTTGCAAAGCAACGGGAGCAGTATACCTGCTTCCTCCTCCT TTTCTTCTTCCTTCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCCCTCC TTCCCTCCCTGCTCCAGCCCCACCACCACTACTGGACTGCTCTCCTTCTC CCCTCATTCCCGCCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTACCCA AGCAAGTGACTGATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTTCGCT CAAGCCAGGCTAAAAACACACTCAATTAACAACAACAAAGAAGGGGGAAA ATGGGAAAAAAATGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGCGGAC TAGGGAGAGAGGGAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTTGACG GCGGAGGGGCACTGCTATCAGTATGCAGTGGATGTAAGAGAGGGAGGCGT GTGTAGATTAGTAGATGAGAAAACGATGCTGCAGGAGGAGTCAGGGTCGC AAGCCGTGGCACAACGCTTGTTGAGTGGCTGGGCTTGAAGCACAGATAAT TGCTTGAAGTATTTTGTAATAAAGAAGAGAACGAGAATATGGTTCT back to top protein sequence of NO24G01600.1
>NO24G01600.1-protein ID=NO24G01600.1-protein|Name=NO24G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp MILGGGSRSGAGSRGNSSSGGSRGPKETVYHYGFNQDASCVALGSSRGFS VFNTHPFRPSLHESVGGVGIVEMLYCTSLLALVGAGDQAGFSPRCLKIWN TKRQSSLFDVAFMSKIVGVRLNRRRLVVALERALYIFGLEKMEKLQELEM GENRGGLLALSAREEPSYLAYPGHEPGVVLLHDVLSLRLINKITAHKTKL AALALSLDGSLLATASVTGTVIRVMSVPEGRWLYTLRRGRSSCTIFSLAF NHAGTRLAASSDKGTVHIFHLSSSSSSSSDTVPRSPITLQSNGSSIPASS SFSSSFSSNEAPSFPPPSFPPCSSPTTTTGLLSFSPHSRLPTFSLSSLGV PKQVTDVVMGVEGTRSFAQARLKTHSINNNKEGGKWEKNVCALIPSRGGS GLGREGGREEGETLVVLTAEGHCYQYAVDVREGGVCRLVDEKTMLQEESG SQAVAQRLLSGWA* back to top mRNA from alignment at chr24:427515..429702+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01600.1 ID=NO24G01600.1|Name=NO24G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp|location=Sequence derived from alignment at chr24:427515..429702+ (Nannochloropsis oceanica) GCCGCATTCTCATGATCAAGATTCCTCAGAACTAAAGCACCCACGACTCG
AAACACATAAAACCACACGCAGGAGACCAGGAAGTGCACGGTGACTATGA
TTCTGGGTGGGGGTAGTCGCAGCGGGGCTGGGAGTAGAGGAAACAGCAGC
AGCGGCGGCTCGCGAGGTCCAAAGGAG GTAAAGAGCAAACCCAGGCGCTT
TCACCCAGAGCGCACGAGGACGTTAAGATGAGAAAGAGAGGAGTGTGGAG
GAGAGATATCTTGACAGATACGTGATGCACTGTACCTCAACAGCCACCAC
ACGAGCACAGTAGAGAGCAATTACTCTGACCTCCTCATGATCACCCTCCC
TTCCTCCCTACCTCCCTCCCCTCCACATACAGACGGTCTACCACTACGGC
TTCAACCAAGATGCAAGTTGTGTCGCCCTTGGATCCTCTCGTGGGTTCTC
CGTCTTCAACACTCACCCTTTCCGCCCTTCCCTTCACGAGAGCGTGGGTG
GGGTAGGAATTGTCGAGATGTTGTATTGCACCTCTCTGTTGGCATTGGTA
GGAGCAGGGGACCAAGCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAA
TACCAAACGACAATCCTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTG
TGGGAGTGAGATTGAACAGACGACGGTTGGTG GTACGTTTTTCGCTCCTT
CTCTCCCCCTTCTTCCTTCTCTCCTTACCTTCTTTCCCCTCGCAATTCAT
TTCCCAACCTTTTAAATATTATTCTCCTCCCCCCCCTGTCCCGTTCGCAT
TCACCATATTTTCCGCCTTCCATCCTTATCTTGATCCCTCCCCCCATACT
CAGGTGGCACTGGAGCGCGCTTTGTATATTTTTGGGTTGGAAAAGATGGA
GAAATTGCAAGAGCTGGAGATGGGGGAAAATAGGGGTGGCTTGCTGGCCT
TATCGGCACGGGAGGAGCCTAG GTATTAATTTAATTCTTTATCAATGTAC
TTCTTTACCAATTTATTTATTTGTCAACTTGTTTATCTATTTATTTATCT
ATTATAAATGAATAAATTAATTATTTCACCATAATTATCTAATATTTAAC
AGCTATCTGGCCTACCCCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGA
CGTCCTCTCCCTTCGCCTCATCAACAAGATTACCGCGCACAAGACAAAGT
TGGCGGCCCTGGCGCTCTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCG
GTGACGGGGACAGTAATTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTT
GTACACACTGAGGCG GTAAGCAGGGAGGGAGGAGGAGAGGGAGGGCAGGG
GAAGGTACCAATGCCTACCAAAAACGAGGATACGATGATGGCAACTAAAA
ATATAAATAACCCGAGATTAAGACGCACATCCATTCTCACGTCAACCGCA
GAGGTCGATCTTCCTGTACTATCTTCTCTCTCGCCTTCAACCACGCTGGC
ACCCGGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCATATATTCCACCT
TTCCTCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTCGTTCTCCCATCA
CCTTGCAAAGCAACGGGAGCAGTATACCTGCTTCCTCCTCCTTTTCTTCT
TCCTTCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCCCTCCTTCCCTCC
CTGCTCCAGCCCCACCACCACTACTGGACTGCTCTCCTTCTCCCCTCATT
CCCGCCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTACCCAAGCAAGTG
ACTGATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTTCGCTCAAGCCAG
GCTAAAAACACACTCAATTAACAACAACAAAGAAGGGGGAAAATGGGAAA
AAAATGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGCGGACTAGGGAGA
GAGGGAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTTGACGGCGGAGGG
GCACTGCTATCAGTATGCAGTGGATGTAAGAGAGGGAGGCGTGTGTAGAT
TAGTAGATGAGAAAACGATGCTGCAGGAGGAGTCAGGGTCGCAAGCCGTG
GCACAACGCTTGTTGAGTGGCTGGGCTTGA AGCACAGATAATTGCTTGAA
GTATTTTGTAATAAAGAAGAGAACGAGAATATGGTTCT back to top Coding sequence (CDS) from alignment at chr24:427515..429702+
>NO24G01600.1 ID=NO24G01600.1|Name=NO24G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at chr24:427515..429702+ (Nannochloropsis oceanica) ATGATTCTGGGTGGGGGTAGTCGCAGCGGGGCTGGGAGTAGAGGAAACAG CAGCAGCGGCGGCTCGCGAGGTCCAAAGGAGACGGTCTACCACTACGGCT TCAACCAAGATGCAAGTTGTGTCGCCCTTGGATCCTCTCGTGGGTTCTCC GTCTTCAACACTCACCCTTTCCGCCCTTCCCTTCACGAGAGCGTGGGTGG GGTAGGAATTGTCGAGATGTTGTATTGCACCTCTCTGTTGGCATTGGTAG GAGCAGGGGACCAAGCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAAT ACCAAACGACAATCCTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTGT GGGAGTGAGATTGAACAGACGACGGTTGGTGGTGGCACTGGAGCGCGCTT TGTATATTTTTGGGTTGGAAAAGATGGAGAAATTGCAAGAGCTGGAGATG GGGGAAAATAGGGGTGGCTTGCTGGCCTTATCGGCACGGGAGGAGCCTAG CTATCTGGCCTACCCCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGACG TCCTCTCCCTTCGCCTCATCAACAAGATTACCGCGCACAAGACAAAGTTG GCGGCCCTGGCGCTCTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCGGT GACGGGGACAGTAATTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTTGT ACACACTGAGGCGAGGTCGATCTTCCTGTACTATCTTCTCTCTCGCCTTC AACCACGCTGGCACCCGGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCA TATATTCCACCTTTCCTCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTC GTTCTCCCATCACCTTGCAAAGCAACGGGAGCAGTATACCTGCTTCCTCC TCCTTTTCTTCTTCCTTCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCC CTCCTTCCCTCCCTGCTCCAGCCCCACCACCACTACTGGACTGCTCTCCT TCTCCCCTCATTCCCGCCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTA CCCAAGCAAGTGACTGATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTT CGCTCAAGCCAGGCTAAAAACACACTCAATTAACAACAACAAAGAAGGGG GAAAATGGGAAAAAAATGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGC GGACTAGGGAGAGAGGGAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTT GACGGCGGAGGGGCACTGCTATCAGTATGCAGTGGATGTAAGAGAGGGAG GCGTGTGTAGATTAGTAGATGAGAAAACGATGCTGCAGGAGGAGTCAGGG TCGCAAGCCGTGGCACAACGCTTGTTGAGTGGCTGGGCTTGA back to top