NO24G01600.1, NO24G01600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01600.1
Unique NameNO24G01600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1546
Alignment locationchr24:427515..429702 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:427515..429702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01600.1 vs.
Match: XP_008864352.1 (hypothetical protein H310_02572 [Aphanomyces invadans]; ETW06277.1 hypothetical protein H310_02572 [Aphanomyces invadans])

HSP 1 Score: 252.3 bits (643), Expect = 2.900e-63
Identity = 161/437 (36.84%), Postives = 240/437 (54.92%), Query Frame = 0 
Query:   25 PKETVYHYGFNQDASCVALGSSRGFSVFNTHPFRPSLHESVGGVGIVEMLYCTSLLALVGAGDQAGFSPRCLKIWNTKRQSSLFDVAFMSKIVGVRLNRRRLVVALERALYIFGLEKMEKLQELEMGENRGGLLALSAREEPSYLAYP-GHEPGVVLLHDVLSLRLINKITAHKTKLAALALSLDGSLLATASVTGTVIRVMSVPEGRWLYTLRRGRSSCTIFSLAFNHAGTRLAASSDKGTVHIFHLSSSSSSSSDTVPRSPITLQSNGSSIPASSSFSSSFSSNEAPSFPPPSFPPCSSPTTTTGLLSFSPHSRLPTFSLSSLGVPKQVTDVVMGVEGTRSFAQARLKTHSINNNKEGGKWEKNVCALIPSRGGSGLGREGGREEGETLVVLTAEGHCYQYAVDVREGGVCRLVDEKTMLQEESGSQAVAQRLLS 461
            P  +V +  FNQDA+C+++G+ +GF V++  PF  S  ++ GG+G+ EML+ +SL+ LVGAG+Q  FSPR L++WNTK  +++ D+ F++ ++GV+LNR+RLVV LE+ +YIF +  M+ L  L+   N   L  LS  +   YLA+P G   G ++L+D ++L ++N + AH+    ALA++  G+LLATAS TGT++RV  VP G    T RRG    TI+SLAFN   T L  SSD GT+HIF L+ + S+++ +   SPI         P ++S        + P+    + P  S P  T GL S+ P S                  V    EG R FA ARL+T ++           N+CAL     GS             ++V T +G  YQY+ D+  GG C L  E+  +  +S S+ +    LS
Sbjct:   10 PDSSVLYVSFNQDATCISVGTRQGFFVYSCEPFGRSFQDAAGGIGLAEMLFSSSLIVLVGAGEQPAFSPRRLRVWNTKTSAAICDLNFVTAVLGVQLNRQRLVVVLEKKIYIFDINSMQVLNTLDTSSNPKALCVLSPADN-GYLAFPAGGVAGEIVLYDAINLSVLNAVQAHRGMPVALAMNATGTLLATASDTGTILRVFDVPSGTKRATFRRGSYPATIYSLAFNPTSTLLCCSSDTGTIHIFSLTGAESAATGSYTLSPIL-------APVTASL-------DVPATAAQTAPSGSKPAKTGGLRSYLPSS------------------VSRIAEGARDFAYARLRTPNM----------PNLCALKGPAPGS---------HHVQVLVATMDGLFYQYSFDMTTGGECVL--EREHMLRDSASEEIQAMYLS 392
The following BLAST results are available for this feature:
BLAST of NO24G01600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_008864352.12.900e-6336.84hypothetical protein H310_02572 [Aphanomyces invad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01600NO24G01600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01600.1NO24G01600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01600.1.cds1NO24G01600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01600.1.cds2NO24G01600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01600.1.cds3NO24G01600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01600.1.cds4NO24G01600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01600.1.cds5NO24G01600.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01600.1 ID=NO24G01600.1|Name=NO24G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp
GCCGCATTCTCATGATCAAGATTCCTCAGAACTAAAGCACCCACGACTCG
AAACACATAAAACCACACGCAGGAGACCAGGAAGTGCACGGTGACTATGA
TTCTGGGTGGGGGTAGTCGCAGCGGGGCTGGGAGTAGAGGAAACAGCAGC
AGCGGCGGCTCGCGAGGTCCAAAGGAGACGGTCTACCACTACGGCTTCAA
CCAAGATGCAAGTTGTGTCGCCCTTGGATCCTCTCGTGGGTTCTCCGTCT
TCAACACTCACCCTTTCCGCCCTTCCCTTCACGAGAGCGTGGGTGGGGTA
GGAATTGTCGAGATGTTGTATTGCACCTCTCTGTTGGCATTGGTAGGAGC
AGGGGACCAAGCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAATACCA
AACGACAATCCTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTGTGGGA
GTGAGATTGAACAGACGACGGTTGGTGGTGGCACTGGAGCGCGCTTTGTA
TATTTTTGGGTTGGAAAAGATGGAGAAATTGCAAGAGCTGGAGATGGGGG
AAAATAGGGGTGGCTTGCTGGCCTTATCGGCACGGGAGGAGCCTAGCTAT
CTGGCCTACCCCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGACGTCCT
CTCCCTTCGCCTCATCAACAAGATTACCGCGCACAAGACAAAGTTGGCGG
CCCTGGCGCTCTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCGGTGACG
GGGACAGTAATTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTTGTACAC
ACTGAGGCGAGGTCGATCTTCCTGTACTATCTTCTCTCTCGCCTTCAACC
ACGCTGGCACCCGGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCATATA
TTCCACCTTTCCTCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTCGTTC
TCCCATCACCTTGCAAAGCAACGGGAGCAGTATACCTGCTTCCTCCTCCT
TTTCTTCTTCCTTCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCCCTCC
TTCCCTCCCTGCTCCAGCCCCACCACCACTACTGGACTGCTCTCCTTCTC
CCCTCATTCCCGCCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTACCCA
AGCAAGTGACTGATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTTCGCT
CAAGCCAGGCTAAAAACACACTCAATTAACAACAACAAAGAAGGGGGAAA
ATGGGAAAAAAATGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGCGGAC
TAGGGAGAGAGGGAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTTGACG
GCGGAGGGGCACTGCTATCAGTATGCAGTGGATGTAAGAGAGGGAGGCGT
GTGTAGATTAGTAGATGAGAAAACGATGCTGCAGGAGGAGTCAGGGTCGC
AAGCCGTGGCACAACGCTTGTTGAGTGGCTGGGCTTGAAGCACAGATAAT
TGCTTGAAGTATTTTGTAATAAAGAAGAGAACGAGAATATGGTTCT
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protein sequence of NO24G01600.1

>NO24G01600.1-protein ID=NO24G01600.1-protein|Name=NO24G01600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=464bp
MILGGGSRSGAGSRGNSSSGGSRGPKETVYHYGFNQDASCVALGSSRGFS
VFNTHPFRPSLHESVGGVGIVEMLYCTSLLALVGAGDQAGFSPRCLKIWN
TKRQSSLFDVAFMSKIVGVRLNRRRLVVALERALYIFGLEKMEKLQELEM
GENRGGLLALSAREEPSYLAYPGHEPGVVLLHDVLSLRLINKITAHKTKL
AALALSLDGSLLATASVTGTVIRVMSVPEGRWLYTLRRGRSSCTIFSLAF
NHAGTRLAASSDKGTVHIFHLSSSSSSSSDTVPRSPITLQSNGSSIPASS
SFSSSFSSNEAPSFPPPSFPPCSSPTTTTGLLSFSPHSRLPTFSLSSLGV
PKQVTDVVMGVEGTRSFAQARLKTHSINNNKEGGKWEKNVCALIPSRGGS
GLGREGGREEGETLVVLTAEGHCYQYAVDVREGGVCRLVDEKTMLQEESG
SQAVAQRLLSGWA*
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mRNA from alignment at chr24:427515..429702+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01600.1 ID=NO24G01600.1|Name=NO24G01600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp|location=Sequence derived from alignment at chr24:427515..429702+ (Nannochloropsis oceanica)
GCCGCATTCTCATGATCAAGATTCCTCAGAACTAAAGCACCCACGACTCG
AAACACATAAAACCACACGCAGGAGACCAGGAAGTGCACGGTGACTATGA
TTCTGGGTGGGGGTAGTCGCAGCGGGGCTGGGAGTAGAGGAAACAGCAGC
AGCGGCGGCTCGCGAGGTCCAAAGGAGGTAAAGAGCAAACCCAGGCGCTT
TCACCCAGAGCGCACGAGGACGTTAAGATGAGAAAGAGAGGAGTGTGGAG
GAGAGATATCTTGACAGATACGTGATGCACTGTACCTCAACAGCCACCAC
ACGAGCACAGTAGAGAGCAATTACTCTGACCTCCTCATGATCACCCTCCC
TTCCTCCCTACCTCCCTCCCCTCCACATACAGACGGTCTACCACTACGGC
TTCAACCAAGATGCAAGTTGTGTCGCCCTTGGATCCTCTCGTGGGTTCTC
CGTCTTCAACACTCACCCTTTCCGCCCTTCCCTTCACGAGAGCGTGGGTG
GGGTAGGAATTGTCGAGATGTTGTATTGCACCTCTCTGTTGGCATTGGTA
GGAGCAGGGGACCAAGCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAA
TACCAAACGACAATCCTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTG
TGGGAGTGAGATTGAACAGACGACGGTTGGTGGTACGTTTTTCGCTCCTT
CTCTCCCCCTTCTTCCTTCTCTCCTTACCTTCTTTCCCCTCGCAATTCAT
TTCCCAACCTTTTAAATATTATTCTCCTCCCCCCCCTGTCCCGTTCGCAT
TCACCATATTTTCCGCCTTCCATCCTTATCTTGATCCCTCCCCCCATACT
CAGGTGGCACTGGAGCGCGCTTTGTATATTTTTGGGTTGGAAAAGATGGA
GAAATTGCAAGAGCTGGAGATGGGGGAAAATAGGGGTGGCTTGCTGGCCT
TATCGGCACGGGAGGAGCCTAGGTATTAATTTAATTCTTTATCAATGTAC
TTCTTTACCAATTTATTTATTTGTCAACTTGTTTATCTATTTATTTATCT
ATTATAAATGAATAAATTAATTATTTCACCATAATTATCTAATATTTAAC
AGCTATCTGGCCTACCCCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGA
CGTCCTCTCCCTTCGCCTCATCAACAAGATTACCGCGCACAAGACAAAGT
TGGCGGCCCTGGCGCTCTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCG
GTGACGGGGACAGTAATTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTT
GTACACACTGAGGCGGTAAGCAGGGAGGGAGGAGGAGAGGGAGGGCAGGG
GAAGGTACCAATGCCTACCAAAAACGAGGATACGATGATGGCAACTAAAA
ATATAAATAACCCGAGATTAAGACGCACATCCATTCTCACGTCAACCGCA
GAGGTCGATCTTCCTGTACTATCTTCTCTCTCGCCTTCAACCACGCTGGC
ACCCGGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCATATATTCCACCT
TTCCTCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTCGTTCTCCCATCA
CCTTGCAAAGCAACGGGAGCAGTATACCTGCTTCCTCCTCCTTTTCTTCT
TCCTTCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCCCTCCTTCCCTCC
CTGCTCCAGCCCCACCACCACTACTGGACTGCTCTCCTTCTCCCCTCATT
CCCGCCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTACCCAAGCAAGTG
ACTGATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTTCGCTCAAGCCAG
GCTAAAAACACACTCAATTAACAACAACAAAGAAGGGGGAAAATGGGAAA
AAAATGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGCGGACTAGGGAGA
GAGGGAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTTGACGGCGGAGGG
GCACTGCTATCAGTATGCAGTGGATGTAAGAGAGGGAGGCGTGTGTAGAT
TAGTAGATGAGAAAACGATGCTGCAGGAGGAGTCAGGGTCGCAAGCCGTG
GCACAACGCTTGTTGAGTGGCTGGGCTTGAAGCACAGATAATTGCTTGAA
GTATTTTGTAATAAAGAAGAGAACGAGAATATGGTTCT
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Coding sequence (CDS) from alignment at chr24:427515..429702+

>NO24G01600.1 ID=NO24G01600.1|Name=NO24G01600.1|organism=Nannochloropsis oceanica|type=CDS|length=1392bp|location=Sequence derived from alignment at chr24:427515..429702+ (Nannochloropsis oceanica)
ATGATTCTGGGTGGGGGTAGTCGCAGCGGGGCTGGGAGTAGAGGAAACAG
CAGCAGCGGCGGCTCGCGAGGTCCAAAGGAGACGGTCTACCACTACGGCT
TCAACCAAGATGCAAGTTGTGTCGCCCTTGGATCCTCTCGTGGGTTCTCC
GTCTTCAACACTCACCCTTTCCGCCCTTCCCTTCACGAGAGCGTGGGTGG
GGTAGGAATTGTCGAGATGTTGTATTGCACCTCTCTGTTGGCATTGGTAG
GAGCAGGGGACCAAGCAGGGTTCTCGCCGCGATGCCTCAAGATATGGAAT
ACCAAACGACAATCCTCTCTGTTTGACGTGGCTTTCATGTCGAAGATTGT
GGGAGTGAGATTGAACAGACGACGGTTGGTGGTGGCACTGGAGCGCGCTT
TGTATATTTTTGGGTTGGAAAAGATGGAGAAATTGCAAGAGCTGGAGATG
GGGGAAAATAGGGGTGGCTTGCTGGCCTTATCGGCACGGGAGGAGCCTAG
CTATCTGGCCTACCCCGGTCACGAGCCCGGCGTGGTCCTCCTCCATGACG
TCCTCTCCCTTCGCCTCATCAACAAGATTACCGCGCACAAGACAAAGTTG
GCGGCCCTGGCGCTCTCTTTGGACGGGTCCCTGCTCGCCACGGCCTCGGT
GACGGGGACAGTAATTCGTGTCATGAGCGTGCCGGAAGGGAGGTGGTTGT
ACACACTGAGGCGAGGTCGATCTTCCTGTACTATCTTCTCTCTCGCCTTC
AACCACGCTGGCACCCGGCTAGCTGCCTCCAGTGATAAGGGCACCGTGCA
TATATTCCACCTTTCCTCCTCCTCCTCCTCTTCCTCTGATACCGTTCCTC
GTTCTCCCATCACCTTGCAAAGCAACGGGAGCAGTATACCTGCTTCCTCC
TCCTTTTCTTCTTCCTTCTCCTCCAACGAAGCTCCCTCCTTTCCTCCTCC
CTCCTTCCCTCCCTGCTCCAGCCCCACCACCACTACTGGACTGCTCTCCT
TCTCCCCTCATTCCCGCCTTCCCACCTTCTCCCTCTCCAGCCTTGGTGTA
CCCAAGCAAGTGACTGATGTGGTGATGGGCGTAGAAGGTACTCGGTCCTT
CGCTCAAGCCAGGCTAAAAACACACTCAATTAACAACAACAAAGAAGGGG
GAAAATGGGAAAAAAATGTTTGTGCCCTTATCCCAAGTCGTGGCGGCAGC
GGACTAGGGAGAGAGGGAGGGAGGGAGGAGGGAGAGACATTGGTGGTGTT
GACGGCGGAGGGGCACTGCTATCAGTATGCAGTGGATGTAAGAGAGGGAG
GCGTGTGTAGATTAGTAGATGAGAAAACGATGCTGCAGGAGGAGTCAGGG
TCGCAAGCCGTGGCACAACGCTTGTTGAGTGGCTGGGCTTGA
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Synonyms
Publications