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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:400881..404566 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01510.2 vs.
Match: XP_005854541.1 (Fe-Fe hydrogenase maturation protein [Nannochloropsis gaditana CCMP526]; EKU21823.1 Fe-Fe hydrogenase maturation protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 919.8 bits (2376), Expect = 4.200e-264 Identity = 467/537 (86.96%), Postives = 491/537 (91.43%), Query Frame = 0
Query: 34 HQQRGLAQWSVETERHHKYEDPAKIIDEVAINRLLEETKEKAKDPAHVKAILVAAQDRARLQSPPPGHPNADPPLNEFVQGLTLEEAATLLNVDSADKEMMQLLYNAALNVKQQIYGNRIVLFAPVYLANWCVNTCQYCAFRGANKQMQRSMLTMDELRQEVEALEAIGHKRLLLLTGEHPKYSFDRFLEAVQVVGTVKTPNPCGEIRRINVEIPSLSVSDMKRLKATQYIGTYTLFQETYHRETFKKMHPGGPKSDYNHRLLTMDRAQLGGLDDVGIGALFGLADYRFEVMGLLMHAHHLDRTYGTGPHTISIPRMQPALNAPAAEHIPMPVSDDDFKKLVAVIRCAVPYTGMILSTRESAATRSELLRLGISQISAGSRTDVGAYHRDTTCDAANFISNTASSSST---AGRPAKTQLPLAAIAAATAVHEVEEEEDTDEYKRRRGQFSLQDHRPLDTVIKDLLHDGFIPSFCTACYRKGRTGAAFMKIAKSGRIQDFCQPNALLSLQEYMEVCSEDDSCIL---VVHRNCTLLS 565
HQQR LAQWS+ETE HHKYEDPAKIIDE INRLLEETK+KAKD A VKAILVAAQ+RARLQ+ PPGHP ADPP NEFVQGLTLEEAATLLNVDS +K++MQLLY+AALNVKQQIYGNRIVLFAPVYLANWCVNTCQYCAFRGANKQMQRSMLTMDELRQEVEALEAIGHKRLLLLTGEHPKYSFDRFLEAVQVVGTVKTPNPCGEIRRINVEIPSLSVSDM+RLKATQYIGTYTLFQETYHR+TF+KMHPGGPKSDYNHR+LTMDRAQLGGLDDVGIGALFGLADYRFEV+GLLMHAHHLDRTYGTGPHTISIPRMQPALNAPAAEHIP+PV DDDFKKLVAVIRCAVPYTGMILSTRESA R ELLRLGISQISAGSRTDVGAYHRDT+CDAA FISNTA +S AGRPAK+QLP A A+ EEEEDT+EYK RRGQF LQDHRPLDTVIKDLLHDGFIPSFCTACYRKGRTGAAFMKIAKSGRIQDFCQPNALLSLQEYME + + + V+HR L+S
Sbjct: 33 HQQRWLAQWSIETEHHHKYEDPAKIIDEGLINRLLEETKDKAKDAACVKAILVAAQERARLQAMPPGHPTADPPQNEFVQGLTLEEAATLLNVDSGNKDIMQLLYDAALNVKQQIYGNRIVLFAPVYLANWCVNTCQYCAFRGANKQMQRSMLTMDELRQEVEALEAIGHKRLLLLTGEHPKYSFDRFLEAVQVVGTVKTPNPCGEIRRINVEIPSLSVSDMRRLKATQYIGTYTLFQETYHRDTFRKMHPGGPKSDYNHRILTMDRAQLGGLDDVGIGALFGLADYRFEVLGLLMHAHHLDRTYGTGPHTISIPRMQPALNAPAAEHIPLPVHDDDFKKLVAVIRCAVPYTGMILSTRESAQIRRELLRLGISQISAGSRTDVGAYHRDTSCDAAPFISNTAGTSGNGYRAGRPAKSQLPPPATLDAS---RKEEEEDTEEYKLRRGQFCLQDHRPLDTVIKDLLHDGFIPSFCTACYRKGRTGAAFMKIAKSGRIQDFCQPNALLSLQEYMEDYASPQTKAIGAEVIHRESQLMS 566
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G01510.2 ID=NO24G01510.2|Name=NO24G01510.2|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp
AACAGACCCCACAATACAGGCCAAACACTCGCCTTCAAGTCCTCTTTCTT
CAAGATGCTGCGACTGGCGCAATGGTGCTGTCGCCCGCGCGTGAGCTCTT
CCGCTGCACCATCGACGACCTCGCCGGCCCGTCTCAACCTTGCCATCTGG
CCACATCAACAACGAGGACTGGCGCAGTGGTCTGTGGAAACAGAGCGCCA
CCACAAGTACGAGGACCCGGCCAAGATCATTGACGAGGTTGCGATCAATC
GGTTACTGGAAGAGACCAAGGAAAAGGCCAAGGACCCTGCGCATGTCAAG
GCTATCCTTGTCGCTGCTCAAGATCGTGCCCGGCTCCAAAGTCCGCCCCC
GGGGCACCCTAATGCCGACCCTCCCCTCAATGAGTTTGTGCAAGGCCTGA
CTTTGGAAGAGGCGGCGACACTCTTGAATGTCGATTCGGCGGACAAGGAG
ATGATGCAATTATTGTACAACGCGGCGTTGAATGTAAAGCAGCAGATTTA
TGGCAATCGCATCGTGCTGTTTGCTCCCGTGTATCTGGCCAACTGGTGCG
TGAACACGTGTCAGTACTGTGCCTTTCGTGGGGCCAACAAACAGATGCAA
CGGAGCATGTTGACCATGGATGAATTACGTCAAGAAGTGGAGGCCTTGGA
GGCGATTGGCCATAAGCGGCTGTTGCTGCTTACGGGGGAGCATCCAAAGT
ACTCATTTGATCGATTTTTGGAAGCCGTGCAAGTGGTGGGCACCGTCAAG
ACACCCAACCCTTGCGGAGAAATCCGTCGCATAAATGTCGAGATCCCCTC
CTTATCCGTGTCGGACATGAAACGGCTGAAAGCAACGCAATACATTGGCA
CCTACACGCTTTTTCAAGAGACATATCACCGAGAGACCTTCAAAAAGATG
CATCCAGGCGGACCCAAGAGCGACTATAACCACAGGCTTTTAACGATGGA
TCGAGCGCAATTAGGTGGCTTGGATGACGTCGGAATTGGGGCCCTCTTCG
GATTGGCTGATTACCGCTTCGAAGTTATGGGGCTGCTGATGCACGCGCAT
CATCTGGATCGGACCTACGGTACAGGGCCCCATACTATATCCATTCCACG
CATGCAGCCTGCCTTAAATGCGCCTGCAGCTGAGCACATTCCTATGCCAG
TGAGTGATGATGATTTCAAAAAACTTGTGGCTGTCATTCGGTGTGCGGTT
CCTTATACTGGTATGATTCTCTCGACCCGTGAATCAGCAGCCACTCGCAG
CGAGCTCCTCCGGCTGGGTATTTCTCAGATCAGTGCCGGTTCTCGAACGG
ATGTAGGTGCTTATCATCGCGACACCACCTGCGATGCAGCAAATTTTATC
AGCAACACGGCCAGCAGCAGTAGCACAGCAGGCCGCCCTGCTAAAACACA
GCTTCCTCTAGCAGCGATAGCGGCGGCGACGGCTGTACACGAGGTTGAAG
AGGAGGAGGACACGGATGAGTACAAGCGGAGACGAGGGCAGTTCTCGTTG
CAGGATCATCGACCCCTTGACACCGTAATCAAAGACTTGCTACATGACGG
CTTCATTCCTTCCTTCTGCACGGCATGCTACCGGAAAGGGCGCACGGGAG
CTGCGTTCATGAAAATTGCTAAAAGTGGACGGATCCAAGACTTTTGCCAG
CCTAACGCTTTGCTCAGCCTACAGGAGTATATGGAGGTATGCAGTGAAGA
TGATTCTTGTATCTTGGTCGTTCATCGAAATTGCACCCTTCTCTCCACCA
TACTTGTGTCGATTCCCTTTTCTCAGCTTCTTTACTCTTTCTTCCTCATC
GTGCTTTTAGGATTACGCCTCTCCCCAGACGAAAGCCGTGGGCGATGAGG
TAATTGCTCGGGAGAGCCAGATGATGGGCGACAATGCCAAGCGGGCTTAT
GAGAGGAAGCGACAGCAGCTCTTACGAGGAAAGCGGGATCTTTACTTTTA
GGTGTGGAAGAAAAGAAACATGGATAAATATGTGAAAGAGAGGGATAAGT
ATGTAGATCTCTGTAAAATGAATAAAGACGGGAAAGGTATCGGAGA back to topprotein sequence of NO24G01510.2 >NO24G01510.2-protein ID=NO24G01510.2-protein|Name=NO24G01510.2|organism=Nannochloropsis oceanica|type=polypeptide|length=598bp
MLRLAQWCCRPRVSSSAAPSTTSPARLNLAIWPHQQRGLAQWSVETERHH
KYEDPAKIIDEVAINRLLEETKEKAKDPAHVKAILVAAQDRARLQSPPPG
HPNADPPLNEFVQGLTLEEAATLLNVDSADKEMMQLLYNAALNVKQQIYG
NRIVLFAPVYLANWCVNTCQYCAFRGANKQMQRSMLTMDELRQEVEALEA
IGHKRLLLLTGEHPKYSFDRFLEAVQVVGTVKTPNPCGEIRRINVEIPSL
SVSDMKRLKATQYIGTYTLFQETYHRETFKKMHPGGPKSDYNHRLLTMDR
AQLGGLDDVGIGALFGLADYRFEVMGLLMHAHHLDRTYGTGPHTISIPRM
QPALNAPAAEHIPMPVSDDDFKKLVAVIRCAVPYTGMILSTRESAATRSE
LLRLGISQISAGSRTDVGAYHRDTTCDAANFISNTASSSSTAGRPAKTQL
PLAAIAAATAVHEVEEEEDTDEYKRRRGQFSLQDHRPLDTVIKDLLHDGF
IPSFCTACYRKGRTGAAFMKIAKSGRIQDFCQPNALLSLQEYMEVCSEDD
SCILVVHRNCTLLSTILVSIPFSQLLYSFFLIVLLGLRLSPDESRGR* back to topmRNA from alignment at chr24:400881..404566+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G01510.2 ID=NO24G01510.2|Name=NO24G01510.2|organism=Nannochloropsis oceanica|type=mRNA|length=3686bp|location=Sequence derived from alignment at chr24:400881..404566+ (Nannochloropsis oceanica)
AACAGACCCCACAATACAGGCCAAACACTCGCCTTCAAGTCCTCTTTCTT
CAAGATGCTGCGACTGGCGCAATGGTGCTGTCGCCCGCGCGTGAGCTCTT
CCGCTGCACCATCGACGACCTCGCCGGCCCGTCTCAACCTTGCCATCTGG
CCACATCAACAACGAGGACTGGCGCAGTGGTCTGTGGAAACAGAGCGCCA
CCACAAGTACGAGGACCCGGCCAAGATCATTGACGAGGTTGCGATCAATC
GGTTACTGGAAGAGACCAAGGAAAAGGTATGGTGAGACCTGGTTTGGCTT
AAATAGGATGATAGCACTTGGGATGCCAGGCACATATGGCAACCATGTGG
CATCCTCACGTATGGGACAAACCCTACCACCGCGAAAAACCGCAGGCCAA
GGACCCTGCGCATGTCAAGGCTATCCTTGTCGCTGCTCAAGATCGTGCCC
GGCTCCAAAGTCCGCCCCCGGGGCACCCTAATGCCGACCCTCCCCTCAAT
GAGTTTGTGCAAGGCCTGACTTTGGAAGAGGCGGCGACACTCTTGAATGT
CGATTCGGCGGACAAGGAGATGATGCAATTATTGTACAACGCGGCGTTGA
ATGTAAAGCAGCAGATTTATGGTAAGTTGGTGAGGATACGGTGGGGTGTT
AGATGGGGTCTTTTTTCACTCTGTTCGGAGTACTAATGAATGTCATACAC
AGTATCTTGTTTGACGGGTGACTGGACTGTCGGGTGCTGGATGATGTGTT
TCTTTTTTGCTTAAATGTATTCTTCCAAGCAACGTCTTACCGCTGACCGC
GCGATCTACACACACCACTAGTGTAGACAGGCTACCTGCACATATATATT
TGTTTCTGACCACCACTTATTCTTGCACGATACAAACACCCACCAAAACA
GGCAATCGCATCGTGCTGTTTGCTCCCGTGTATCTGGCCAACTGGTGCGT
GAACACGTGTCAGTACTGTGCCTTTCGTGGGGCCAACAAACAGATGCAAC
GGAGCATGTTGACCATGGATGAATTACGGTGGGTGTCCGCCCGTCTGCAA
TATTTCATGGAATGGCTTGGGCATTTGTTTCTTTATATCCACACTCTTCA
TATCCTCTTTTCCCTGAAAGCCCGAAGCTTTGTCAGGGCGGGTTTTCACC
AGACCCAAATCTTGTGTTGAAAGGAGGAGATGACGGGAAAGGAGAGGTTT
GCGGCGGAGCCCCATTTGCCACGTGTGTGTGGTTTTGGGTGCCTCTGATA
TTCTGGCATTATTTTTCAGTATTCCTTCTTTTTCTAGGTCATCTGTCTCT
ATTGCTCAATAGCTCTAATACTCGCGGCTTTCTCCTTCTTTTTTTCACTC
GCCATTCTCTTTTCTCCTCCCTCGCTTGGGCTCTCTATCTCTCTGCCTTT
CCGCAGTCAAGAAGTGGAGGCCTTGGAGGCGATTGGCCATAAGCGGCTGT
TGCTGCTTACGGGGGAGCATCCAAAGTACTCATTTGATCGATTTTTGGAA
GCCGTGCAAGTGGTAAGTCGACATATCTCTTTCATTATCTTCCTTTATTT
GTGGATGAAAAGAGGATATGAAAGGGGGACGGGGGGACGGGAGCGAAAGA
GACCGTATCCGTTTGACATATACTAAGCTTTGTCCGTTGATCGTCACTTT
TCTTGTTACGGGTTACGCGCGCTAGCATTGCAACTGTCCTCTCACACACA
TCGTCTCTCCTCCTTTAACTCCTCCTCTTCCTTCTCCTTCTCCTCCTCCA
GGTGGGCACCGTCAAGACACCCAACCCTTGCGGAGAAATCCGTCGCATAA
ATGTCGAGATCCCCTCCTTATCCGTGTCGGACATGAAACGGCTGAAAGCA
ACGCAATACATTGGTGAGAATGTTAATTTCCTTGATTCCCTCTTTTTCTC
TCTGCCCCCCCCTCGTGTAATCCCACCTTCTCTTTTGTCGTCTGACGCCC
TTTCTCCCTCTTCTGCTTATGATGAAGGCACCTACACGCTTTTTCAAGAG
ACATATCACCGAGAGACCTTCAAAAAGATGCATCCAGGCGGACCCAAGAG
CGACTATAACCACAGGTAGGACACGGAATCATGGGAGAATGGGATATAGA
AGGCTTGTAAGTTTCACCACCTGGTATTCATTTCGGGGCTACATAGGCTT
TTAACGATGGATCGAGCGCAATTAGGTGGCTTGGATGACGTCGGAATTGG
GGCCCTCTTCGGATTGGCTGGTGAGGCAGCGAGGGAAGGGGGGAGGGAGG
AAGGGAGGGAGGAGAGAGTAATTGATGTCGACTTTATTTCCACCGTGTTC
TTTTCTTTTTTCATGATGTCTTCCCTCACTTTTTGCCACTGTTTCTTCTT
TCGATCCTGGCCTTCGCCTGGATCATTGCAGATTACCGCTTCGAAGTTAT
GGGGCTGCTGATGCACGCGCATCATCTGGATCGGACCTACGGTACAGGGC
CCCATACTATATCCATTCCACGCATGCAGCCTGCCTTAAATGCGCCTGCA
GCTGAGCACATTCCTATGCCAGTGAGTGATGATGATTTCAAAAAACTTGT
GGCTGTCATTCGGTGTGCGGTTCCTTATACTGGTAAGAAGAAAGACTGGT
GAGAAAGAAGAAGGGATCACGAGTTTAGGCGTAGTAAATGCCGCACCTTT
CCCCTCAGCTGACTAATTCTCTGTCAAACTGGCATGCTTAACATTCACGT
ATGCCTATCCTCCTCCCCGTCTCCCCTCCCTCCCCAGGTATGATTCTCTC
GACCCGTGAATCAGCAGCCACTCGCAGCGAGCTCCTCCGGCTGGGTATTT
CTCAGATCAGTGCCGGTTCTCGAACGGATGTAGGTGCTTATCATCGCGAC
ACCACCTGCGATGCAGCAAATTTTATCAGCAACACGGCCAGCAGCAGTAG
CACAGCAGGCCGCCCTGCTAAAACACAGCTTCCTCTAGCAGCGATAGCGG
CGGCGACGGCTGTACACGAGGTTGAAGAGGAGGAGGACACGGATGAGTAC
AAGCGGAGACGAGGGCAGTTCTCGTTGCAGGTAAGAAGTACATTTTGGGG
TATTCAATCGTGTATGAGCTCTTTCTAAGCCGTATCCTCACATGTGGCTT
GATTTCTCTCCGTCCTTCCTATGTAATTTCCCTCTCGTTCTAGGATCATC
GACCCCTTGACACCGTAATCAAAGACTTGCTACATGACGGCTTCATTCCT
TCCTTCTGCACGGCATGCTACCGGAAAGGGCGCACGGGAGCTGCGTTCAT
GAAAATTGCTAAAAGTGGACGGATCCAAGACTTTTGCCAGCCTAACGCTT
TGCTCAGCCTACAGGAGTATATGGAGGTATGCAGTGAAGATGATTCTTGT
ATCTTGGTCGTTCATCGAAATTGCACCCTTCTCTCCACCATACTTGTGTC
GATTCCCTTTTCTCAGCTTCTTTACTCTTTCTTCCTCATCGTGCTTTTAG
GATTACGCCTCTCCCCAGACGAAAGCCGTGGGCGATGAGGTAATTGCTCG
GGAGAGCCAGATGATGGGCGACAATGCCAAGCGGGCTTATGAGAGGAAGC
GACAGCAGCTCTTACGAGGAAAGCGGGATCTTTACTTTTAGGTGTGGAAG
AAAAGAAACATGGATAAATATGTGAAAGAGAGGGATAAGTATGTAGATCT
CTGTAAAATGAATAAAGACGGGAAAGGTATCGGAGA back to topCoding sequence (CDS) from alignment at chr24:400881..404566+ >NO24G01510.2 ID=NO24G01510.2|Name=NO24G01510.2|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at chr24:400881..404566+ (Nannochloropsis oceanica)
ATGCTGCGACTGGCGCAATGGTGCTGTCGCCCGCGCGTGAGCTCTTCCGC
TGCACCATCGACGACCTCGCCGGCCCGTCTCAACCTTGCCATCTGGCCAC
ATCAACAACGAGGACTGGCGCAGTGGTCTGTGGAAACAGAGCGCCACCAC
AAGTACGAGGACCCGGCCAAGATCATTGACGAGGTTGCGATCAATCGGTT
ACTGGAAGAGACCAAGGAAAAGGCCAAGGACCCTGCGCATGTCAAGGCTA
TCCTTGTCGCTGCTCAAGATCGTGCCCGGCTCCAAAGTCCGCCCCCGGGG
CACCCTAATGCCGACCCTCCCCTCAATGAGTTTGTGCAAGGCCTGACTTT
GGAAGAGGCGGCGACACTCTTGAATGTCGATTCGGCGGACAAGGAGATGA
TGCAATTATTGTACAACGCGGCGTTGAATGTAAAGCAGCAGATTTATGGC
AATCGCATCGTGCTGTTTGCTCCCGTGTATCTGGCCAACTGGTGCGTGAA
CACGTGTCAGTACTGTGCCTTTCGTGGGGCCAACAAACAGATGCAACGGA
GCATGTTGACCATGGATGAATTACGTCAAGAAGTGGAGGCCTTGGAGGCG
ATTGGCCATAAGCGGCTGTTGCTGCTTACGGGGGAGCATCCAAAGTACTC
ATTTGATCGATTTTTGGAAGCCGTGCAAGTGGTGGGCACCGTCAAGACAC
CCAACCCTTGCGGAGAAATCCGTCGCATAAATGTCGAGATCCCCTCCTTA
TCCGTGTCGGACATGAAACGGCTGAAAGCAACGCAATACATTGGCACCTA
CACGCTTTTTCAAGAGACATATCACCGAGAGACCTTCAAAAAGATGCATC
CAGGCGGACCCAAGAGCGACTATAACCACAGGCTTTTAACGATGGATCGA
GCGCAATTAGGTGGCTTGGATGACGTCGGAATTGGGGCCCTCTTCGGATT
GGCTGATTACCGCTTCGAAGTTATGGGGCTGCTGATGCACGCGCATCATC
TGGATCGGACCTACGGTACAGGGCCCCATACTATATCCATTCCACGCATG
CAGCCTGCCTTAAATGCGCCTGCAGCTGAGCACATTCCTATGCCAGTGAG
TGATGATGATTTCAAAAAACTTGTGGCTGTCATTCGGTGTGCGGTTCCTT
ATACTGGTATGATTCTCTCGACCCGTGAATCAGCAGCCACTCGCAGCGAG
CTCCTCCGGCTGGGTATTTCTCAGATCAGTGCCGGTTCTCGAACGGATGT
AGGTGCTTATCATCGCGACACCACCTGCGATGCAGCAAATTTTATCAGCA
ACACGGCCAGCAGCAGTAGCACAGCAGGCCGCCCTGCTAAAACACAGCTT
CCTCTAGCAGCGATAGCGGCGGCGACGGCTGTACACGAGGTTGAAGAGGA
GGAGGACACGGATGAGTACAAGCGGAGACGAGGGCAGTTCTCGTTGCAGG
ATCATCGACCCCTTGACACCGTAATCAAAGACTTGCTACATGACGGCTTC
ATTCCTTCCTTCTGCACGGCATGCTACCGGAAAGGGCGCACGGGAGCTGC
GTTCATGAAAATTGCTAAAAGTGGACGGATCCAAGACTTTTGCCAGCCTA
ACGCTTTGCTCAGCCTACAGGAGTATATGGAGGTATGCAGTGAAGATGAT
TCTTGTATCTTGGTCGTTCATCGAAATTGCACCCTTCTCTCCACCATACT
TGTGTCGATTCCCTTTTCTCAGCTTCTTTACTCTTTCTTCCTCATCGTGC
TTTTAGGATTACGCCTCTCCCCAGACGAAAGCCGTGGGCGATGA back to top
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