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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr24 | genome | chr24:400881..404566 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G01510.1 vs.
Match: XP_005854541.1 (Fe-Fe hydrogenase maturation protein [Nannochloropsis gaditana CCMP526]; EKU21823.1 Fe-Fe hydrogenase maturation protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 991.9 bits (2563), Expect = 8.600e-286 Identity = 500/560 (89.29%), Postives = 523/560 (93.39%), Query Frame = 0
Query: 34 HQQRGLAQWSVETERHHKYEDPAKIIDEVAINRLLEETKEKAKDPAHVKAILVAAQDRARLQSPPPGHPNADPPLNEFVQGLTLEEAATLLNVDSADKEMMQLLYNAALNVKQQIYGNRIVLFAPVYLANWCVNTCQYCAFRGANKQMQRSMLTMDELRQEVEALEAIGHKRLLLLTGEHPKYSFDRFLEAVQVVGTVKTPNPCGEIRRINVEIPSLSVSDMKRLKATQYIGTYTLFQETYHRETFKKMHPGGPKSDYNHRLLTMDRAQLGGLDDVGIGALFGLADYRFEVMGLLMHAHHLDRTYGTGPHTISIPRMQPALNAPAAEHIPMPVSDDDFKKLVAVIRCAVPYTGMILSTRESAATRSELLRLGISQISAGSRTDVGAYHRDTTCDAANFISNTASSSST---AGRPAKTQLPLAAIAAATAVHEVEEEEDTDEYKRRRGQFSLQDHRPLDTVIKDLLHDGFIPSFCTACYRKGRTGAAFMKIAKSGRIQDFCQPNALLSLQEYMEDYASPQTKAVGDEVIARESQMMGDNAKRAYERKRQQLLRGKRDLYF 591
HQQR LAQWS+ETE HHKYEDPAKIIDE INRLLEETK+KAKD A VKAILVAAQ+RARLQ+ PPGHP ADPP NEFVQGLTLEEAATLLNVDS +K++MQLLY+AALNVKQQIYGNRIVLFAPVYLANWCVNTCQYCAFRGANKQMQRSMLTMDELRQEVEALEAIGHKRLLLLTGEHPKYSFDRFLEAVQVVGTVKTPNPCGEIRRINVEIPSLSVSDM+RLKATQYIGTYTLFQETYHR+TF+KMHPGGPKSDYNHR+LTMDRAQLGGLDDVGIGALFGLADYRFEV+GLLMHAHHLDRTYGTGPHTISIPRMQPALNAPAAEHIP+PV DDDFKKLVAVIRCAVPYTGMILSTRESA R ELLRLGISQISAGSRTDVGAYHRDT+CDAA FISNTA +S AGRPAK+QLP A A+ EEEEDT+EYK RRGQF LQDHRPLDTVIKDLLHDGFIPSFCTACYRKGRTGAAFMKIAKSGRIQDFCQPNALLSLQEYMEDYASPQTKA+G EVI RESQ+M DNAKRAY+RKR+QLL GKRDLYF
Sbjct: 33 HQQRWLAQWSIETEHHHKYEDPAKIIDEGLINRLLEETKDKAKDAACVKAILVAAQERARLQAMPPGHPTADPPQNEFVQGLTLEEAATLLNVDSGNKDIMQLLYDAALNVKQQIYGNRIVLFAPVYLANWCVNTCQYCAFRGANKQMQRSMLTMDELRQEVEALEAIGHKRLLLLTGEHPKYSFDRFLEAVQVVGTVKTPNPCGEIRRINVEIPSLSVSDMRRLKATQYIGTYTLFQETYHRDTFRKMHPGGPKSDYNHRILTMDRAQLGGLDDVGIGALFGLADYRFEVLGLLMHAHHLDRTYGTGPHTISIPRMQPALNAPAAEHIPLPVHDDDFKKLVAVIRCAVPYTGMILSTRESAQIRRELLRLGISQISAGSRTDVGAYHRDTSCDAAPFISNTAGTSGNGYRAGRPAKSQLPPPATLDAS---RKEEEEDTEEYKLRRGQFCLQDHRPLDTVIKDLLHDGFIPSFCTACYRKGRTGAAFMKIAKSGRIQDFCQPNALLSLQEYMEDYASPQTKAIGAEVIHRESQLMSDNAKRAYDRKRRQLLEGKRDLYF 589
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G01510.1 ID=NO24G01510.1|Name=NO24G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1922bp AACAGACCCCACAATACAGGCCAAACACTCGCCTTCAAGTCCTCTTTCTT CAAGATGCTGCGACTGGCGCAATGGTGCTGTCGCCCGCGCGTGAGCTCTT CCGCTGCACCATCGACGACCTCGCCGGCCCGTCTCAACCTTGCCATCTGG CCACATCAACAACGAGGACTGGCGCAGTGGTCTGTGGAAACAGAGCGCCA CCACAAGTACGAGGACCCGGCCAAGATCATTGACGAGGTTGCGATCAATC GGTTACTGGAAGAGACCAAGGAAAAGGCCAAGGACCCTGCGCATGTCAAG GCTATCCTTGTCGCTGCTCAAGATCGTGCCCGGCTCCAAAGTCCGCCCCC GGGGCACCCTAATGCCGACCCTCCCCTCAATGAGTTTGTGCAAGGCCTGA CTTTGGAAGAGGCGGCGACACTCTTGAATGTCGATTCGGCGGACAAGGAG ATGATGCAATTATTGTACAACGCGGCGTTGAATGTAAAGCAGCAGATTTA TGGCAATCGCATCGTGCTGTTTGCTCCCGTGTATCTGGCCAACTGGTGCG TGAACACGTGTCAGTACTGTGCCTTTCGTGGGGCCAACAAACAGATGCAA CGGAGCATGTTGACCATGGATGAATTACGTCAAGAAGTGGAGGCCTTGGA GGCGATTGGCCATAAGCGGCTGTTGCTGCTTACGGGGGAGCATCCAAAGT ACTCATTTGATCGATTTTTGGAAGCCGTGCAAGTGGTGGGCACCGTCAAG ACACCCAACCCTTGCGGAGAAATCCGTCGCATAAATGTCGAGATCCCCTC CTTATCCGTGTCGGACATGAAACGGCTGAAAGCAACGCAATACATTGGCA CCTACACGCTTTTTCAAGAGACATATCACCGAGAGACCTTCAAAAAGATG CATCCAGGCGGACCCAAGAGCGACTATAACCACAGGCTTTTAACGATGGA TCGAGCGCAATTAGGTGGCTTGGATGACGTCGGAATTGGGGCCCTCTTCG GATTGGCTGATTACCGCTTCGAAGTTATGGGGCTGCTGATGCACGCGCAT CATCTGGATCGGACCTACGGTACAGGGCCCCATACTATATCCATTCCACG CATGCAGCCTGCCTTAAATGCGCCTGCAGCTGAGCACATTCCTATGCCAG TGAGTGATGATGATTTCAAAAAACTTGTGGCTGTCATTCGGTGTGCGGTT CCTTATACTGGTATGATTCTCTCGACCCGTGAATCAGCAGCCACTCGCAG CGAGCTCCTCCGGCTGGGTATTTCTCAGATCAGTGCCGGTTCTCGAACGG ATGTAGGTGCTTATCATCGCGACACCACCTGCGATGCAGCAAATTTTATC AGCAACACGGCCAGCAGCAGTAGCACAGCAGGCCGCCCTGCTAAAACACA GCTTCCTCTAGCAGCGATAGCGGCGGCGACGGCTGTACACGAGGTTGAAG AGGAGGAGGACACGGATGAGTACAAGCGGAGACGAGGGCAGTTCTCGTTG CAGGATCATCGACCCCTTGACACCGTAATCAAAGACTTGCTACATGACGG CTTCATTCCTTCCTTCTGCACGGCATGCTACCGGAAAGGGCGCACGGGAG CTGCGTTCATGAAAATTGCTAAAAGTGGACGGATCCAAGACTTTTGCCAG CCTAACGCTTTGCTCAGCCTACAGGAGTATATGGAGGATTACGCCTCTCC CCAGACGAAAGCCGTGGGCGATGAGGTAATTGCTCGGGAGAGCCAGATGA TGGGCGACAATGCCAAGCGGGCTTATGAGAGGAAGCGACAGCAGCTCTTA CGAGGAAAGCGGGATCTTTACTTTTAGGTGTGGAAGAAAAGAAACATGGA TAAATATGTGAAAGAGAGGGATAAGTATGTAGATCTCTGTAAAATGAATA AAGACGGGAAAGGTATCGGAGA back to topprotein sequence of NO24G01510.1 >NO24G01510.1-protein ID=NO24G01510.1-protein|Name=NO24G01510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp MLRLAQWCCRPRVSSSAAPSTTSPARLNLAIWPHQQRGLAQWSVETERHH KYEDPAKIIDEVAINRLLEETKEKAKDPAHVKAILVAAQDRARLQSPPPG HPNADPPLNEFVQGLTLEEAATLLNVDSADKEMMQLLYNAALNVKQQIYG NRIVLFAPVYLANWCVNTCQYCAFRGANKQMQRSMLTMDELRQEVEALEA IGHKRLLLLTGEHPKYSFDRFLEAVQVVGTVKTPNPCGEIRRINVEIPSL SVSDMKRLKATQYIGTYTLFQETYHRETFKKMHPGGPKSDYNHRLLTMDR AQLGGLDDVGIGALFGLADYRFEVMGLLMHAHHLDRTYGTGPHTISIPRM QPALNAPAAEHIPMPVSDDDFKKLVAVIRCAVPYTGMILSTRESAATRSE LLRLGISQISAGSRTDVGAYHRDTTCDAANFISNTASSSSTAGRPAKTQL PLAAIAAATAVHEVEEEEDTDEYKRRRGQFSLQDHRPLDTVIKDLLHDGF IPSFCTACYRKGRTGAAFMKIAKSGRIQDFCQPNALLSLQEYMEDYASPQ TKAVGDEVIARESQMMGDNAKRAYERKRQQLLRGKRDLYF* back to topmRNA from alignment at chr24:400881..404566+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G01510.1 ID=NO24G01510.1|Name=NO24G01510.1|organism=Nannochloropsis oceanica|type=mRNA|length=3686bp|location=Sequence derived from alignment at chr24:400881..404566+ (Nannochloropsis oceanica) AACAGACCCCACAATACAGGCCAAACACTCGCCTTCAAGTCCTCTTTCTT
CAAGATGCTGCGACTGGCGCAATGGTGCTGTCGCCCGCGCGTGAGCTCTT
CCGCTGCACCATCGACGACCTCGCCGGCCCGTCTCAACCTTGCCATCTGG
CCACATCAACAACGAGGACTGGCGCAGTGGTCTGTGGAAACAGAGCGCCA
CCACAAGTACGAGGACCCGGCCAAGATCATTGACGAGGTTGCGATCAATC
GGTTACTGGAAGAGACCAAGGAAAAGGTATGGTGAGACCTGGTTTGGCTT
AAATAGGATGATAGCACTTGGGATGCCAGGCACATATGGCAACCATGTGG
CATCCTCACGTATGGGACAAACCCTACCACCGCGAAAAACCGCAGGCCAA
GGACCCTGCGCATGTCAAGGCTATCCTTGTCGCTGCTCAAGATCGTGCCC
GGCTCCAAAGTCCGCCCCCGGGGCACCCTAATGCCGACCCTCCCCTCAAT
GAGTTTGTGCAAGGCCTGACTTTGGAAGAGGCGGCGACACTCTTGAATGT
CGATTCGGCGGACAAGGAGATGATGCAATTATTGTACAACGCGGCGTTGA
ATGTAAAGCAGCAGATTTATGGTAAGTTGGTGAGGATACGGTGGGGTGTT
AGATGGGGTCTTTTTTCACTCTGTTCGGAGTACTAATGAATGTCATACAC
AGTATCTTGTTTGACGGGTGACTGGACTGTCGGGTGCTGGATGATGTGTT
TCTTTTTTGCTTAAATGTATTCTTCCAAGCAACGTCTTACCGCTGACCGC
GCGATCTACACACACCACTAGTGTAGACAGGCTACCTGCACATATATATT
TGTTTCTGACCACCACTTATTCTTGCACGATACAAACACCCACCAAAACA
GGCAATCGCATCGTGCTGTTTGCTCCCGTGTATCTGGCCAACTGGTGCGT
GAACACGTGTCAGTACTGTGCCTTTCGTGGGGCCAACAAACAGATGCAAC
GGAGCATGTTGACCATGGATGAATTACGGTGGGTGTCCGCCCGTCTGCAA
TATTTCATGGAATGGCTTGGGCATTTGTTTCTTTATATCCACACTCTTCA
TATCCTCTTTTCCCTGAAAGCCCGAAGCTTTGTCAGGGCGGGTTTTCACC
AGACCCAAATCTTGTGTTGAAAGGAGGAGATGACGGGAAAGGAGAGGTTT
GCGGCGGAGCCCCATTTGCCACGTGTGTGTGGTTTTGGGTGCCTCTGATA
TTCTGGCATTATTTTTCAGTATTCCTTCTTTTTCTAGGTCATCTGTCTCT
ATTGCTCAATAGCTCTAATACTCGCGGCTTTCTCCTTCTTTTTTTCACTC
GCCATTCTCTTTTCTCCTCCCTCGCTTGGGCTCTCTATCTCTCTGCCTTT
CCGCAGTCAAGAAGTGGAGGCCTTGGAGGCGATTGGCCATAAGCGGCTGT
TGCTGCTTACGGGGGAGCATCCAAAGTACTCATTTGATCGATTTTTGGAA
GCCGTGCAAGTGGTAAGTCGACATATCTCTTTCATTATCTTCCTTTATTT
GTGGATGAAAAGAGGATATGAAAGGGGGACGGGGGGACGGGAGCGAAAGA
GACCGTATCCGTTTGACATATACTAAGCTTTGTCCGTTGATCGTCACTTT
TCTTGTTACGGGTTACGCGCGCTAGCATTGCAACTGTCCTCTCACACACA
TCGTCTCTCCTCCTTTAACTCCTCCTCTTCCTTCTCCTTCTCCTCCTCCA
GGTGGGCACCGTCAAGACACCCAACCCTTGCGGAGAAATCCGTCGCATAA
ATGTCGAGATCCCCTCCTTATCCGTGTCGGACATGAAACGGCTGAAAGCA
ACGCAATACATTGGTGAGAATGTTAATTTCCTTGATTCCCTCTTTTTCTC
TCTGCCCCCCCCTCGTGTAATCCCACCTTCTCTTTTGTCGTCTGACGCCC
TTTCTCCCTCTTCTGCTTATGATGAAGGCACCTACACGCTTTTTCAAGAG
ACATATCACCGAGAGACCTTCAAAAAGATGCATCCAGGCGGACCCAAGAG
CGACTATAACCACAGGTAGGACACGGAATCATGGGAGAATGGGATATAGA
AGGCTTGTAAGTTTCACCACCTGGTATTCATTTCGGGGCTACATAGGCTT
TTAACGATGGATCGAGCGCAATTAGGTGGCTTGGATGACGTCGGAATTGG
GGCCCTCTTCGGATTGGCTGGTGAGGCAGCGAGGGAAGGGGGGAGGGAGG
AAGGGAGGGAGGAGAGAGTAATTGATGTCGACTTTATTTCCACCGTGTTC
TTTTCTTTTTTCATGATGTCTTCCCTCACTTTTTGCCACTGTTTCTTCTT
TCGATCCTGGCCTTCGCCTGGATCATTGCAGATTACCGCTTCGAAGTTAT
GGGGCTGCTGATGCACGCGCATCATCTGGATCGGACCTACGGTACAGGGC
CCCATACTATATCCATTCCACGCATGCAGCCTGCCTTAAATGCGCCTGCA
GCTGAGCACATTCCTATGCCAGTGAGTGATGATGATTTCAAAAAACTTGT
GGCTGTCATTCGGTGTGCGGTTCCTTATACTGGTAAGAAGAAAGACTGGT
GAGAAAGAAGAAGGGATCACGAGTTTAGGCGTAGTAAATGCCGCACCTTT
CCCCTCAGCTGACTAATTCTCTGTCAAACTGGCATGCTTAACATTCACGT
ATGCCTATCCTCCTCCCCGTCTCCCCTCCCTCCCCAGGTATGATTCTCTC
GACCCGTGAATCAGCAGCCACTCGCAGCGAGCTCCTCCGGCTGGGTATTT
CTCAGATCAGTGCCGGTTCTCGAACGGATGTAGGTGCTTATCATCGCGAC
ACCACCTGCGATGCAGCAAATTTTATCAGCAACACGGCCAGCAGCAGTAG
CACAGCAGGCCGCCCTGCTAAAACACAGCTTCCTCTAGCAGCGATAGCGG
CGGCGACGGCTGTACACGAGGTTGAAGAGGAGGAGGACACGGATGAGTAC
AAGCGGAGACGAGGGCAGTTCTCGTTGCAGGTAAGAAGTACATTTTGGGG
TATTCAATCGTGTATGAGCTCTTTCTAAGCCGTATCCTCACATGTGGCTT
GATTTCTCTCCGTCCTTCCTATGTAATTTCCCTCTCGTTCTAGGATCATC
GACCCCTTGACACCGTAATCAAAGACTTGCTACATGACGGCTTCATTCCT
TCCTTCTGCACGGCATGCTACCGGAAAGGGCGCACGGGAGCTGCGTTCAT
GAAAATTGCTAAAAGTGGACGGATCCAAGACTTTTGCCAGCCTAACGCTT
TGCTCAGCCTACAGGAGTATATGGAGGTATGCAGTGAAGATGATTCTTGT
ATCTTGGTCGTTCATCGAAATTGCACCCTTCTCTCCACCATACTTGTGTC
GATTCCCTTTTCTCAGCTTCTTTACTCTTTCTTCCTCATCGTGCTTTTAG
GATTACGCCTCTCCCCAGACGAAAGCCGTGGGCGATGAGGTAATTGCTCG
GGAGAGCCAGATGATGGGCGACAATGCCAAGCGGGCTTATGAGAGGAAGC
GACAGCAGCTCTTACGAGGAAAGCGGGATCTTTACTTTTAGGTGTGGAAG
AAAAGAAACATGGATAAATATGTGAAAGAGAGGGATAAGTATGTAGATCT
CTGTAAAATGAATAAAGACGGGAAAGGTATCGGAGA back to topCoding sequence (CDS) from alignment at chr24:400881..404566+ >NO24G01510.1 ID=NO24G01510.1|Name=NO24G01510.1|organism=Nannochloropsis oceanica|type=CDS|length=1773bp|location=Sequence derived from alignment at chr24:400881..404566+ (Nannochloropsis oceanica) ATGCTGCGACTGGCGCAATGGTGCTGTCGCCCGCGCGTGAGCTCTTCCGC TGCACCATCGACGACCTCGCCGGCCCGTCTCAACCTTGCCATCTGGCCAC ATCAACAACGAGGACTGGCGCAGTGGTCTGTGGAAACAGAGCGCCACCAC AAGTACGAGGACCCGGCCAAGATCATTGACGAGGTTGCGATCAATCGGTT ACTGGAAGAGACCAAGGAAAAGGCCAAGGACCCTGCGCATGTCAAGGCTA TCCTTGTCGCTGCTCAAGATCGTGCCCGGCTCCAAAGTCCGCCCCCGGGG CACCCTAATGCCGACCCTCCCCTCAATGAGTTTGTGCAAGGCCTGACTTT GGAAGAGGCGGCGACACTCTTGAATGTCGATTCGGCGGACAAGGAGATGA TGCAATTATTGTACAACGCGGCGTTGAATGTAAAGCAGCAGATTTATGGC AATCGCATCGTGCTGTTTGCTCCCGTGTATCTGGCCAACTGGTGCGTGAA CACGTGTCAGTACTGTGCCTTTCGTGGGGCCAACAAACAGATGCAACGGA GCATGTTGACCATGGATGAATTACGTCAAGAAGTGGAGGCCTTGGAGGCG ATTGGCCATAAGCGGCTGTTGCTGCTTACGGGGGAGCATCCAAAGTACTC ATTTGATCGATTTTTGGAAGCCGTGCAAGTGGTGGGCACCGTCAAGACAC CCAACCCTTGCGGAGAAATCCGTCGCATAAATGTCGAGATCCCCTCCTTA TCCGTGTCGGACATGAAACGGCTGAAAGCAACGCAATACATTGGCACCTA CACGCTTTTTCAAGAGACATATCACCGAGAGACCTTCAAAAAGATGCATC CAGGCGGACCCAAGAGCGACTATAACCACAGGCTTTTAACGATGGATCGA GCGCAATTAGGTGGCTTGGATGACGTCGGAATTGGGGCCCTCTTCGGATT GGCTGATTACCGCTTCGAAGTTATGGGGCTGCTGATGCACGCGCATCATC TGGATCGGACCTACGGTACAGGGCCCCATACTATATCCATTCCACGCATG CAGCCTGCCTTAAATGCGCCTGCAGCTGAGCACATTCCTATGCCAGTGAG TGATGATGATTTCAAAAAACTTGTGGCTGTCATTCGGTGTGCGGTTCCTT ATACTGGTATGATTCTCTCGACCCGTGAATCAGCAGCCACTCGCAGCGAG CTCCTCCGGCTGGGTATTTCTCAGATCAGTGCCGGTTCTCGAACGGATGT AGGTGCTTATCATCGCGACACCACCTGCGATGCAGCAAATTTTATCAGCA ACACGGCCAGCAGCAGTAGCACAGCAGGCCGCCCTGCTAAAACACAGCTT CCTCTAGCAGCGATAGCGGCGGCGACGGCTGTACACGAGGTTGAAGAGGA GGAGGACACGGATGAGTACAAGCGGAGACGAGGGCAGTTCTCGTTGCAGG ATCATCGACCCCTTGACACCGTAATCAAAGACTTGCTACATGACGGCTTC ATTCCTTCCTTCTGCACGGCATGCTACCGGAAAGGGCGCACGGGAGCTGC GTTCATGAAAATTGCTAAAAGTGGACGGATCCAAGACTTTTGCCAGCCTA ACGCTTTGCTCAGCCTACAGGAGTATATGGAGGATTACGCCTCTCCCCAG ACGAAAGCCGTGGGCGATGAGGTAATTGCTCGGGAGAGCCAGATGATGGG CGACAATGCCAAGCGGGCTTATGAGAGGAAGCGACAGCAGCTCTTACGAG GAAAGCGGGATCTTTACTTTTAG back to top
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