NO24G01480.1, NO24G01480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01480.1
Unique NameNO24G01480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1131
Alignment locationchr24:392799..393929 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:392799..393929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01480NO24G01480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01480.1NO24G01480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01480.1.cds1NO24G01480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01480.1 ID=NO24G01480.1|Name=NO24G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp
ATGATCAAGGAGAAGAGGAACAAAGACGAGGAGGAGGGAGAGGAGGAGGA
CGAGGAGAAGGAACAGGAAGTGGAACGCCAAGAGACAAGCGAGGAGGAGC
GCGAGGAGGGGGCGAGGGGGGGAAGGGGTATCGGTGTCGAAGGCCCTTCT
CAGAGCCCCCATCTCTCGTCCCCTGCCACCTTTCCTGCTTCATCTTTACC
TTCCCCCCACCTTCTCTCATTCTCTCCTCCGTCGGAAACGGTCCCGGCGA
CGGTGCTCCCGGAATACTCGGCTCCATCGACAGCAGCAGCGACAGCAGCA
GCAGCAGCTGGTGCAGTTGCAACAGCAGAGGATGTCTCCCCTTCTTTTTC
TGCCTGGAGCTACCAGTCGCCGCATGTCGGTGACCACTCGGCAGAATCAG
CGGCAGCCACGTCGGCAGCAGCAGCAGTAGCAGCAGGAGGGTCAGCAGCA
GCGGCAGTAGCAGGGGGAGGGATCGCGGCAGTCGCCTCACCGCCATTTCA
TTCTTCTTCCCTCCCTTCTTCTACCCCTCCTTCCTCCTCATCCTTCAGTT
TCGCGCCATTTTCTGCGGGAGGAAAGGGACCGGGAGGAGGAGGGAGGGAA
AAAGGGGGAAAGGGAGGGGAGAGACAGCATGGCAGCAGTAAAGCTTTCTT
TGCTCCTTCTCGTTTTCAGCAGCACCCGCAGCAGGAGTGGCAGCAGGAGC
AGCACCAGCACCAACACTATTATCAGCAGCAGCACCAGCCGCAGCAACAG
CACCAGCACTACTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCC
GCAGCCGCAGCCGCAGCCGCAGCAGCACTTCTATCACCACCACCACTACC
TGCAGCAGCAGCAGCAACAACATCAACAGGAGCAACAGGAGCGACAGTAT
CAAAGGTATCACCACCACCCACAACCACCACTGCCGCCGCAACAACAACA
TGAAGAACAACAGCAGCAGCAACAGCAGCAGCAGCAGCATCAGCACCACG
TACCGGGTGGTGCGCGGCTAGTGGGGGCTGGAGGAGGAGGTGGAGAGGGA
AGGAGGGAACCCTCTGCTTCACTGGATTCATGGACATCCTCGTTGCCACC
GATTTATCAGGAACGTGGCTATGAAGAATAA
back to top

protein sequence of NO24G01480.1

>NO24G01480.1-protein ID=NO24G01480.1-protein|Name=NO24G01480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MIKEKRNKDEEEGEEEDEEKEQEVERQETSEEEREEGARGGRGIGVEGPS
QSPHLSSPATFPASSLPSPHLLSFSPPSETVPATVLPEYSAPSTAAATAA
AAAGAVATAEDVSPSFSAWSYQSPHVGDHSAESAAATSAAAAVAAGGSAA
AAVAGGGIAAVASPPFHSSSLPSSTPPSSSSFSFAPFSAGGKGPGGGGRE
KGGKGGERQHGSSKAFFAPSRFQQHPQQEWQQEQHQHQHYYQQQHQPQQQ
HQHYYQQQQQQQQQPQPQPQPQPQQHFYHHHHYLQQQQQQHQQEQQERQY
QRYHHHPQPPLPPQQQHEEQQQQQQQQQQHQHHVPGGARLVGAGGGGGEG
RREPSASLDSWTSSLPPIYQERGYEE*
back to top

mRNA from alignment at chr24:392799..393929-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01480.1 ID=NO24G01480.1|Name=NO24G01480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at chr24:392799..393929- (Nannochloropsis oceanica)
ATGATCAAGGAGAAGAGGAACAAAGACGAGGAGGAGGGAGAGGAGGAGGA
CGAGGAGAAGGAACAGGAAGTGGAACGCCAAGAGACAAGCGAGGAGGAGC
GCGAGGAGGGGGCGAGGGGGGGAAGGGGTATCGGTGTCGAAGGCCCTTCT
CAGAGCCCCCATCTCTCGTCCCCTGCCACCTTTCCTGCTTCATCTTTACC
TTCCCCCCACCTTCTCTCATTCTCTCCTCCGTCGGAAACGGTCCCGGCGA
CGGTGCTCCCGGAATACTCGGCTCCATCGACAGCAGCAGCGACAGCAGCA
GCAGCAGCTGGTGCAGTTGCAACAGCAGAGGATGTCTCCCCTTCTTTTTC
TGCCTGGAGCTACCAGTCGCCGCATGTCGGTGACCACTCGGCAGAATCAG
CGGCAGCCACGTCGGCAGCAGCAGCAGTAGCAGCAGGAGGGTCAGCAGCA
GCGGCAGTAGCAGGGGGAGGGATCGCGGCAGTCGCCTCACCGCCATTTCA
TTCTTCTTCCCTCCCTTCTTCTACCCCTCCTTCCTCCTCATCCTTCAGTT
TCGCGCCATTTTCTGCGGGAGGAAAGGGACCGGGAGGAGGAGGGAGGGAA
AAAGGGGGAAAGGGAGGGGAGAGACAGCATGGCAGCAGTAAAGCTTTCTT
TGCTCCTTCTCGTTTTCAGCAGCACCCGCAGCAGGAGTGGCAGCAGGAGC
AGCACCAGCACCAACACTATTATCAGCAGCAGCACCAGCCGCAGCAACAG
CACCAGCACTACTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCC
GCAGCCGCAGCCGCAGCCGCAGCAGCACTTCTATCACCACCACCACTACC
TGCAGCAGCAGCAGCAACAACATCAACAGGAGCAACAGGAGCGACAGTAT
CAAAGGTATCACCACCACCCACAACCACCACTGCCGCCGCAACAACAACA
TGAAGAACAACAGCAGCAGCAACAGCAGCAGCAGCAGCATCAGCACCACG
TACCGGGTGGTGCGCGGCTAGTGGGGGCTGGAGGAGGAGGTGGAGAGGGA
AGGAGGGAACCCTCTGCTTCACTGGATTCATGGACATCCTCGTTGCCACC
GATTTATCAGGAACGTGGCTATGAAGAATAA
back to top

Coding sequence (CDS) from alignment at chr24:392799..393929-

>NO24G01480.1 ID=NO24G01480.1|Name=NO24G01480.1|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at chr24:392799..393929- (Nannochloropsis oceanica)
ATGATCAAGGAGAAGAGGAACAAAGACGAGGAGGAGGGAGAGGAGGAGGA
CGAGGAGAAGGAACAGGAAGTGGAACGCCAAGAGACAAGCGAGGAGGAGC
GCGAGGAGGGGGCGAGGGGGGGAAGGGGTATCGGTGTCGAAGGCCCTTCT
CAGAGCCCCCATCTCTCGTCCCCTGCCACCTTTCCTGCTTCATCTTTACC
TTCCCCCCACCTTCTCTCATTCTCTCCTCCGTCGGAAACGGTCCCGGCGA
CGGTGCTCCCGGAATACTCGGCTCCATCGACAGCAGCAGCGACAGCAGCA
GCAGCAGCTGGTGCAGTTGCAACAGCAGAGGATGTCTCCCCTTCTTTTTC
TGCCTGGAGCTACCAGTCGCCGCATGTCGGTGACCACTCGGCAGAATCAG
CGGCAGCCACGTCGGCAGCAGCAGCAGTAGCAGCAGGAGGGTCAGCAGCA
GCGGCAGTAGCAGGGGGAGGGATCGCGGCAGTCGCCTCACCGCCATTTCA
TTCTTCTTCCCTCCCTTCTTCTACCCCTCCTTCCTCCTCATCCTTCAGTT
TCGCGCCATTTTCTGCGGGAGGAAAGGGACCGGGAGGAGGAGGGAGGGAA
AAAGGGGGAAAGGGAGGGGAGAGACAGCATGGCAGCAGTAAAGCTTTCTT
TGCTCCTTCTCGTTTTCAGCAGCACCCGCAGCAGGAGTGGCAGCAGGAGC
AGCACCAGCACCAACACTATTATCAGCAGCAGCACCAGCCGCAGCAACAG
CACCAGCACTACTACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCC
GCAGCCGCAGCCGCAGCCGCAGCAGCACTTCTATCACCACCACCACTACC
TGCAGCAGCAGCAGCAACAACATCAACAGGAGCAACAGGAGCGACAGTAT
CAAAGGTATCACCACCACCCACAACCACCACTGCCGCCGCAACAACAACA
TGAAGAACAACAGCAGCAGCAACAGCAGCAGCAGCAGCATCAGCACCACG
TACCGGGTGGTGCGCGGCTAGTGGGGGCTGGAGGAGGAGGTGGAGAGGGA
AGGAGGGAACCCTCTGCTTCACTGGATTCATGGACATCCTCGTTGCCACC
GATTTATCAGGAACGTGGCTATGAAGAATAA
back to top
Synonyms
Publications