NO24G01330.1, NO24G01330.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01330.1
Unique NameNO24G01330.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1676
Alignment locationchr24:361999..364506 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:361999..364506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G01330.1 vs.
Match: EWM24331.1 (adp-ribose pyrophosphatase [Nannochloropsis gaditana])

HSP 1 Score: 433.3 bits (1113), Expect = 4.800e-118
Identity = 203/238 (85.29%), Postives = 224/238 (94.12%), Query Frame = 0 
Query:    1 MAYVIKTEDHTVPGFRWVSLKRLQYCDAKGHKRTWEMAERITRRTPSEGPPPANGVGVVAIISTALEKDNDHIVLVSQFRPPVGKEVLELPAGLVDDGEDEATAAIRELREETGFEGIVTHVSPVIYSDPGLSNASIRYVFMKIDGDLGSNQQPVAIPDDGEIITVHRIPVKRLLSEVETFRDKGLEIDARLYGLALGLQYGDVKQYNPPGSHSSSWTWTFASGVAALLLYRYMKGAG 239
            MAYVIKTEDH+ PGFRWVSLKRLQYCDA+G KRTWEMAERI RRT SEGPPPANGVG+VAIIST+  KDNDHIVLVSQFRPPVGKEVLELPAGLVDDGEDE T+AIRELREETGFEG+VTHVSP++YSDPGLSNAS+RYVFM+IDGDLGSNQQPVA+PD+ EIITVHR+PVKRLL+EVE FR++G EIDARLYGLALGLQ+GDVKQY PPG+ SSSW WT ASG+AALLLYRY++GAG
Sbjct:    1 MAYVIKTEDHSAPGFRWVSLKRLQYCDARGRKRTWEMAERIQRRTASEGPPPANGVGIVAIISTSFAKDNDHIVLVSQFRPPVGKEVLELPAGLVDDGEDETTSAIRELREETGFEGMVTHVSPIVYSDPGLSNASMRYVFMRIDGDLGSNQQPVAMPDEDEIITVHRVPVKRLLNEVEGFREQGFEIDARLYGLALGLQFGDVKQYAPPGASSSSWRWTLASGIAALLLYRYIRGAG 238
The following BLAST results are available for this feature:
BLAST of NO24G01330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24331.14.800e-11885.29adp-ribose pyrophosphatase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01330NO24G01330Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01330.1NO24G01330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01330.1.cds1NO24G01330.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01330.1.cds2NO24G01330.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01330.1.cds3NO24G01330.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01330.1.cds4NO24G01330.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01330.1 ID=NO24G01330.1|Name=NO24G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp
GCCGTTCACGCTGTTTAGCGGGCCCAACGCTGGCTGGCCGAATCGCTGTC
TTGCCCTCATTCCCGTTGTCGCTTTAACTTCTGGTCCGACCCGAACGATC
TCAACCCACTCAACCCGAACGAAGACAGGCCTTTCGTCTATCAATGGAGG
GTGTGACGGTGCATGAGGCCGCTGTCCGGCGTTTTCTTCAGCTCCAACTC
CAACTCCAACCCACGCAGCAACCCAACTTTTGGGAGCGGCCCTTTCGTGA
CACCAGACCCTTTGCGCGTTGCAACCATCCCTACTCTGACAACCCTTTTG
AGCTTGAGTGCAAGACGCTGGCATTTATTTAAACCTAAAATGAGACAATA
TCACCCTTCTTTTCACAACGTACCATCTTAGCACAGGAAGGGTGAGGACA
CAGCCGAGCCGAGCTTGTCGTTGTAGTTGTCGTCTCGCCCGCCAAAGGGA
GACGAGGGGTGCGTTGGCGACAAGTAGCAGCAGCGGGTGGCACGTCCAGT
CTACCAGGACTCTCCTTCGATCAGTAAAAAAGAAAAGGAAAGGAGGAACT
AGTGGTGAAGCCAAAGGAATCGATAGCGTTGATCCAACGGGTTGAAGGCA
TAGGCTTAAGACAACCGAGCCAGTCGAGCATTTACCCCCGGGGTTGACCG
CACGAGAACGATGGCGTACGTAATCAAAACTGAAGACCATACCGTCCCGG
GCTTCCGGTGGGTAAGCCTTAAAAGGCTACAGTACTGTGATGCGAAGGGC
CATAAACGCACGTGGGAAATGGCAGAGAGAATCACGAGACGGACGCCGAG
TGAAGGACCGCCGCCCGCCAATGGAGTAGGGGTTGTCGCTATTATCTCGA
CGGCACTGGAAAAGGACAATGATCACATTGTATTAGTGTCTCAGTTCAGA
CCGCCGGTGGGGAAAGAGGTATTAGAACTGCCGGCAGGTCTAGTAGATGA
TGGAGAGGATGAAGCCACCGCCGCCATCCGCGAGCTCCGAGAAGAGACCG
GCTTTGAAGGCATTGTCACGCACGTCTCGCCTGTCATCTACTCCGACCCG
GGGCTCAGCAACGCCTCCATACGCTATGTCTTTATGAAGATAGACGGTGA
TTTAGGGAGTAACCAGCAGCCTGTCGCCATTCCGGATGACGGCGAGATAA
TTACCGTCCATCGCATCCCTGTCAAAAGATTACTTAGCGAGGTAGAGACG
TTCCGAGACAAGGGTTTGGAGATTGATGCCCGTCTCTACGGTCTTGCTCT
CGGCCTGCAATACGGCGATGTAAAGCAGTATAACCCTCCGGGCAGCCATT
CCTCCTCCTGGACCTGGACTTTCGCTTCTGGAGTTGCCGCGTTGTTGCTT
TACCGGTATATGAAAGGAGCGGGTGGGTAGAGCCCCTTCTTCCTCCTCTC
CCTTCCATTTCCCCTCCATTTATCCCACCCTCTTCGAATAAAAGGGAGGG
AGAGGGGAAGGGATGGGTGGAAGGTAAGAGGGTAGCAGGGTCCGTCGCGG
TCATGGAGGGATGGCAGATGTAGGGATGGAAATCGAGGCGTGCCAATGTC
ATATACAAATATTATCAAATGAACGAGTGAGGGAGAGGGCAAAAGGCAAG
AACGAAGGGGGGCTAAGATGAAACAGGGATTGAGACTAGAGGGAGAAAAG
AAACAACAAATGATGAATCTCCTCTG
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protein sequence of NO24G01330.1

>NO24G01330.1-protein ID=NO24G01330.1-protein|Name=NO24G01330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MAYVIKTEDHTVPGFRWVSLKRLQYCDAKGHKRTWEMAERITRRTPSEGP
PPANGVGVVAIISTALEKDNDHIVLVSQFRPPVGKEVLELPAGLVDDGED
EATAAIRELREETGFEGIVTHVSPVIYSDPGLSNASIRYVFMKIDGDLGS
NQQPVAIPDDGEIITVHRIPVKRLLSEVETFRDKGLEIDARLYGLALGLQ
YGDVKQYNPPGSHSSSWTWTFASGVAALLLYRYMKGAGG*
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mRNA from alignment at chr24:361999..364506+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01330.1 ID=NO24G01330.1|Name=NO24G01330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2508bp|location=Sequence derived from alignment at chr24:361999..364506+ (Nannochloropsis oceanica)
GCCGTTCACGCTGTTTAGCGGGCCCAACGCTGGCTGGCCGAATCGCTGTC
TTGCCCTCATTCCCGTTGTCGCTTTAACTTCTGGTCCGACCCGAACGATC
TCAACCCACTCAACCCGAACGAAGACAGGCCTTTCGTCTATCAATGGAGG
GTGTGACGGTGCATGAGGCCGCTGTCCGGCGTTTTCTTCAGCTCCAACTC
CAACTCCAACCCACGCAGCAACCCAACTTTTGGGAGCGGCCCTTTCGTGA
CACCAGACCCTTTGCGCGTTGCAACCATCCCTACTCTGACAACCCTTTTG
AGCTTGAGTGCAAGACGCTGGCATTTATTTAAACCTAAAATGAGACAATA
TCACCCTTCTTTTCACAACGTACCATCTTAGCACAGGAAGGGTGAGGACA
CAGCCGAGCCGAGCTTGTCGTTGTAGTTGTCGTCTCGCCCGCCAAAGGGA
GACGAGGGGTGCGTTGGCGACAAGTAGCAGCAGCGGGTGGCACGTCCAGT
CTACCAGGACTCTCCTTCGATCAGTAAAAAAGAAAAGGAAAGGAGGAACT
AGTGGTGAAGCCAAAGGAATCGATAGCGTTGATCCAACGGGTTGAAGGCA
TAGGCTTAAGACAACCGAGCCAGTCGAGCATTTACCCCCGGGGTTGACCG
CACGAGAACGATGGCGTACGTAATCAAAACTGAAGACCATACCGTCCCGG
GCTTCCGGTGGGTAAGCCTTAAAAGGCTACAGTACTGTGATGCGAAGGGC
CATAAACGCACGTGGGAAATGGCAGAGAGAATCACGAGACGGACGCCGAG
TGAAGGACCGCCGCCCGCCAATGGAGTAGGGGTTGTCGCTATTATCTCGA
CGGCACTGGAAAAGGACAATGATCACATTGTATTAGGTGAGGAGGGAGGG
AGGGACGGAGGGAGGGAGGAGGGGCTGTGGGAGGGAGACATATACACGCC
AAAGCAGACACATTTTCCCATCTTGACCATTTCCTTTCCTCCCTTCCTCC
TCCTTCCCTCCCCTCCCCTCATGTGAACAGTGTCTCAGTTCAGACCGCCG
GTGGGGAAAGAGGTATTAGAACTGCCGGCAGGTCTAGTAGATGATGGAGA
GGTATGTATTTGTATGAGGAGAGAGGGGAGGGAGGGTAAGGTAGAGTGAC
TGCAAGAAAACGATAATAGATTGTTCATTTCATTTGGCTTTGCGTACATA
CGTAAACCAAGCGTATCCATGATTTCCTCTCTCCCGCACGTCGCTTCGGT
GTTCATAAAATATAAACGTAGGATGAAGCCACCGCCGCCATCCGCGAGCT
CCGAGAAGAGACCGGCTTTGAAGGCATTGTCACGCACGTCTCGCCTGTCA
TCTACTCCGACCCGGGGCTCAGCAACGCCTCCATACGCTATGTCTTTATG
AAGATAGACGGTGATTTAGGGAGTAACCAGCAGCCTGTCGCCATTCCGGA
TGACGGCGAGATAATTACCGTCCATCGCATCCCTGTCAAAAGGTATGTAC
GTCACACCTTCTCCTTTTCTTCCCTTCCTCCGTCCCTCCCTCCCCAGGCA
AGCATCAATGCTTCGATGCGATGGTTGTTTATCAAACAAAATGGGGATAA
AGGAAGGAACGAGCAGCGCTTCGCTGTTTCTAATTATGGCGATGTTATTA
TTACCATCACGCGGAGGGGGCTTCTAAAGAGTTATTTCAGTCTTTTCTAT
GTTCCTTCTTCCATTTCTAAGCTCTCTTCTTTTTTGGTTTACCATGTTAT
TGACGGATGGATTGACTTATATATCTAATTGTTTTTCCTTCTTATACATT
GTGTATTGATATATTCGAAAATGATAATTATATGTTTATTCATTTTACCT
TCTTTATCTTACTTTAATTTATTTTTATTCATTTATTATTTTCCATTTTA
TTAATTCTCCTATTTTTCCTTTTATTCAATTACATTATGTATTTTTATTC
ATTAATAAGCATTCACTCATTCATCCATCTACATATTTATTAACTCGGCT
GTTCAAACAGATTACTTAGCGAGGTAGAGACGTTCCGAGACAAGGGTTTG
GAGATTGATGCCCGTCTCTACGGTCTTGCTCTCGGCCTGCAATACGGCGA
TGTAAAGCAGTATAACCCTCCGGGCAGCCATTCCTCCTCCTGGACCTGGA
CTTTCGCTTCTGGAGTTGCCGCGTTGTTGCTTTACCGGTATATGAAAGGA
GCGGGTGGGTAGAGCCCCTTCTTCCTCCTCTCCCTTCCATTTCCCCTCCA
TTTATCCCACCCTCTTCGAATAAAAGGGAGGGAGAGGGGAAGGGATGGGT
GGAAGGTAAGAGGGTAGCAGGGTCCGTCGCGGTCATGGAGGGATGGCAGA
TGTAGGGATGGAAATCGAGGCGTGCCAATGTCATATACAAATATTATCAA
ATGAACGAGTGAGGGAGAGGGCAAAAGGCAAGAACGAAGGGGGGCTAAGA
TGAAACAGGGATTGAGACTAGAGGGAGAAAAGAAACAACAAATGATGAAT
CTCCTCTG
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Coding sequence (CDS) from alignment at chr24:361999..364506+

>NO24G01330.1 ID=NO24G01330.1|Name=NO24G01330.1|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at chr24:361999..364506+ (Nannochloropsis oceanica)
ATGGCGTACGTAATCAAAACTGAAGACCATACCGTCCCGGGCTTCCGGTG
GGTAAGCCTTAAAAGGCTACAGTACTGTGATGCGAAGGGCCATAAACGCA
CGTGGGAAATGGCAGAGAGAATCACGAGACGGACGCCGAGTGAAGGACCG
CCGCCCGCCAATGGAGTAGGGGTTGTCGCTATTATCTCGACGGCACTGGA
AAAGGACAATGATCACATTGTATTAGTGTCTCAGTTCAGACCGCCGGTGG
GGAAAGAGGTATTAGAACTGCCGGCAGGTCTAGTAGATGATGGAGAGGAT
GAAGCCACCGCCGCCATCCGCGAGCTCCGAGAAGAGACCGGCTTTGAAGG
CATTGTCACGCACGTCTCGCCTGTCATCTACTCCGACCCGGGGCTCAGCA
ACGCCTCCATACGCTATGTCTTTATGAAGATAGACGGTGATTTAGGGAGT
AACCAGCAGCCTGTCGCCATTCCGGATGACGGCGAGATAATTACCGTCCA
TCGCATCCCTGTCAAAAGATTACTTAGCGAGGTAGAGACGTTCCGAGACA
AGGGTTTGGAGATTGATGCCCGTCTCTACGGTCTTGCTCTCGGCCTGCAA
TACGGCGATGTAAAGCAGTATAACCCTCCGGGCAGCCATTCCTCCTCCTG
GACCTGGACTTTCGCTTCTGGAGTTGCCGCGTTGTTGCTTTACCGGTATA
TGAAAGGAGCGGGTGGGTAG
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Synonyms
Publications