NO24G00930.1, NO24G00930.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00930.1
Unique NameNO24G00930.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length711
Alignment locationchr24:253635..254829 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:253635..254829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00930.1 vs.
Match: EWM21095.1 (DNA damage inducible protein [Nannochloropsis gaditana])

HSP 1 Score: 345.9 bits (886), Expect = 9.900e-92
Identity = 184/229 (80.35%), Postives = 196/229 (85.59%), Query Frame = 0 
Query:    1 MKQKLQAMASRMEEQQALQALEANPMDPEAQRKIEEMIQKENVLRNMEAAMDEMPEAFGSVVMLYVDVEVNGHPIKAFVDSGAQSTIMSAACARRCDLSRLIDTRFEGIAKGVGTSKILGRIHMHTLKVGEAHLPCTFTVLENDDVDFLFGLDMLKRHQCCIDLRRNFLVLGSAGKEVPFLAEKDLPVRARGHHIGMEEEEEKRASAETAVTGAEGVKEMLANECGGKE 230
            MKQKL+A++ R+EEQ+A++ALEANPMDPEAQRKIE MIQ+ENV RNME AM+EMPEAFGSVVMLYVDV VNGHPIKAFVDSGAQSTIMSAACA RC LSRLIDTRF GIAKGVGTSKILGRIHMHTLKVGEAHLPCTFTVLENDDVDFLFGLDMLKRHQCCIDLRRN LVLGSAGKEVPFLAEKDLP RARGH    EE  EK         G EG +E   +   G+E
Sbjct:  169 MKQKLEAVSRRVEEQEAIRALEANPMDPEAQRKIESMIQRENVHRNMELAMEEMPEAFGSVVMLYVDVHVNGHPIKAFVDSGAQSTIMSAACALRCGLSRLIDTRFAGIAKGVGTSKILGRIHMHTLKVGEAHLPCTFTVLENDDVDFLFGLDMLKRHQCCIDLRRNLLVLGSAGKEVPFLAEKDLPARARGH---QEEGAEK---------GGEGGREGEGSVGEGRE 385
The following BLAST results are available for this feature:
BLAST of NO24G00930.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21095.19.900e-9280.35DNA damage inducible protein [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00930NO24G00930Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00930.1NO24G00930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00930.1.cds1NO24G00930.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00930.1.cds2NO24G00930.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00930.1.cds3NO24G00930.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00930.1.cds4NO24G00930.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00930.1 ID=NO24G00930.1|Name=NO24G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=711bp
ATGAAGCAGAAGCTGCAGGCCATGGCTAGCCGGATGGAGGAGCAGCAAGC
CCTTCAGGCACTGGAGGCCAACCCAATGGACCCCGAGGCGCAGCGCAAGA
TCGAAGAGATGATCCAGAAGGAAAATGTGCTCCGAAATATGGAGGCGGCC
ATGGATGAAATGCCTGAGGCTTTTGGCTCAGTAGTAATGCTCTACGTCGA
TGTGGAGGTTAACGGGCATCCCATCAAGGCTTTTGTGGACTCGGGCGCAC
AGTCCACAATCATGTCGGCTGCCTGCGCGCGCCGGTGCGATTTGAGCCGC
CTGATTGACACTCGATTCGAAGGCATCGCCAAGGGCGTGGGGACATCCAA
AATTTTGGGGCGTATCCACATGCACACCCTCAAGGTCGGCGAGGCGCACC
TGCCCTGCACATTCACGGTGCTGGAGAACGACGATGTGGATTTTTTGTTC
GGGCTGGACATGCTGAAACGGCACCAGTGCTGCATCGATCTCAGGCGCAA
CTTCCTCGTCTTGGGCAGTGCGGGAAAAGAGGTCCCCTTCCTGGCTGAGA
AAGACTTGCCCGTCCGCGCCCGCGGCCATCACATAGGGATGGAGGAGGAG
GAGGAGAAGCGAGCATCGGCAGAAACAGCGGTGACAGGAGCGGAAGGAGT
GAAGGAGATGCTGGCAAATGAGTGCGGGGGGAAGGAGGGGCGACGGGGGA
GGAGCAATTGA
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protein sequence of NO24G00930.1

>NO24G00930.1-protein ID=NO24G00930.1-protein|Name=NO24G00930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MKQKLQAMASRMEEQQALQALEANPMDPEAQRKIEEMIQKENVLRNMEAA
MDEMPEAFGSVVMLYVDVEVNGHPIKAFVDSGAQSTIMSAACARRCDLSR
LIDTRFEGIAKGVGTSKILGRIHMHTLKVGEAHLPCTFTVLENDDVDFLF
GLDMLKRHQCCIDLRRNFLVLGSAGKEVPFLAEKDLPVRARGHHIGMEEE
EEKRASAETAVTGAEGVKEMLANECGGKEGRRGRSN*
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mRNA from alignment at chr24:253635..254829+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00930.1 ID=NO24G00930.1|Name=NO24G00930.1|organism=Nannochloropsis oceanica|type=mRNA|length=1195bp|location=Sequence derived from alignment at chr24:253635..254829+ (Nannochloropsis oceanica)
ATGAAGCAGAAGCTGCAGGCCATGGCTAGCCGGATGGAGGAGCAGCAAGC
CCTTCAGGCACTGGAGGCCAACCCAATGGACCCCGAGGCGCAGCGCAAGA
TCGAAGAGATGATCCAGAAGGAAAATGTGCTCCGAAATATGGAGGCGGCC
ATGGATGAAATGCCTGAGGCTTTTGGCTCAGTAGTAATGCTCTACGTCGA
TGTGGAGGTTAACGGGTGGGTGTGGAGGGGCAAGAGGCCACAAAATGAAG
CAGGGAAAAGATATAAAGGATGGATGGGATGACGGTCATCTTGTAGGCTC
GGATGGAGGGATCTACATAATCCACACACCCCGCCCCCTTAGCCCGTCTA
GGAATCCTACGTCTGACTGACTGCCCTACTCCCTTCTTTCCACCTCTTTC
TAGGCATCCCATCAAGGCTTTTGTGGACTCGGGCGCACAGTCCACAATCA
TGTCGGCTGCCTGCGCGCGCCGGTGCGATTTGAGGTACGGCATCAAAAAT
TCAGATAGGAGGGAGAGGGGAAATGATGACGATATCCACTGAGGGAGGAG
GCAGAGGAAGGTTAAATGCCGTAGTGAGAGTCTAGGTCATGCTCACCATC
TTCTTCCTGCCCCTCTACACACGTATGCCCCTCCTTCCTCAGCCGCCTGA
TTGACACTCGATTCGAAGGCATCGCCAAGGGCGTGGGGACATCCAAAATT
TTGGGGCGTATCCACATGCACACCCTCAAGGTATGGTTTGCGGCGCTTTT
CTCTCTTTGCGCCTCCTGCCTTTCCCCTCTTATTTTCCACGTATTATCAT
ATCAAACTTCTCTATTTTCTACTTCACACCGCTTCCTCCCTTCTCCTTCC
TTTGTAACCACCTGCCAGGTCGGCGAGGCGCACCTGCCCTGCACATTCAC
GGTGCTGGAGAACGACGATGTGGATTTTTTGTTCGGGCTGGACATGCTGA
AACGGCACCAGTGCTGCATCGATCTCAGGCGCAACTTCCTCGTCTTGGGC
AGTGCGGGAAAAGAGGTCCCCTTCCTGGCTGAGAAAGACTTGCCCGTCCG
CGCCCGCGGCCATCACATAGGGATGGAGGAGGAGGAGGAGAAGCGAGCAT
CGGCAGAAACAGCGGTGACAGGAGCGGAAGGAGTGAAGGAGATGCTGGCA
AATGAGTGCGGGGGGAAGGAGGGGCGACGGGGGAGGAGCAATTGA
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Coding sequence (CDS) from alignment at chr24:253635..254829+

>NO24G00930.1 ID=NO24G00930.1|Name=NO24G00930.1|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at chr24:253635..254829+ (Nannochloropsis oceanica)
ATGAAGCAGAAGCTGCAGGCCATGGCTAGCCGGATGGAGGAGCAGCAAGC
CCTTCAGGCACTGGAGGCCAACCCAATGGACCCCGAGGCGCAGCGCAAGA
TCGAAGAGATGATCCAGAAGGAAAATGTGCTCCGAAATATGGAGGCGGCC
ATGGATGAAATGCCTGAGGCTTTTGGCTCAGTAGTAATGCTCTACGTCGA
TGTGGAGGTTAACGGGCATCCCATCAAGGCTTTTGTGGACTCGGGCGCAC
AGTCCACAATCATGTCGGCTGCCTGCGCGCGCCGGTGCGATTTGAGCCGC
CTGATTGACACTCGATTCGAAGGCATCGCCAAGGGCGTGGGGACATCCAA
AATTTTGGGGCGTATCCACATGCACACCCTCAAGGTCGGCGAGGCGCACC
TGCCCTGCACATTCACGGTGCTGGAGAACGACGATGTGGATTTTTTGTTC
GGGCTGGACATGCTGAAACGGCACCAGTGCTGCATCGATCTCAGGCGCAA
CTTCCTCGTCTTGGGCAGTGCGGGAAAAGAGGTCCCCTTCCTGGCTGAGA
AAGACTTGCCCGTCCGCGCCCGCGGCCATCACATAGGGATGGAGGAGGAG
GAGGAGAAGCGAGCATCGGCAGAAACAGCGGTGACAGGAGCGGAAGGAGT
GAAGGAGATGCTGGCAAATGAGTGCGGGGGGAAGGAGGGGCGACGGGGGA
GGAGCAATTGA
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Synonyms
Publications