NO24G00830.1, NO24G00830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00830.1
Unique NameNO24G00830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length687
Alignment locationchr24:233965..235250 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:233965..235250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00830.1 vs.
Match: EWM21104.1 (xylose isomerase [Nannochloropsis gaditana])

HSP 1 Score: 414.8 bits (1065), Expect = 1.700e-112
Identity = 196/227 (86.34%), Postives = 217/227 (95.59%), Query Frame = 0 
Query:    1 MAAFFKMVVAYKAKIGATYQLLIEPKPKEPSAHQYDYDAQTVICFLKSYGLEKDFKINIEPNHTTLAGHCAEHDIVVAGQYGMLGSIDANTGVPHLGWDTDCFMSDTQQTTLIMKTVLEQGGIAPGGLNFDAKVRRESTSLEDMFIAHILGMDAFAKGLLGAAALLEDGVLPAMVSKRYASYTEGFGKKLAEGKATLEECEAYVMEHGEPTQISGSQEKYQSIFNTY 228
            MAAFF+MVVAYKAKIGATYQLL+EPKPKEP+AHQYDYDAQTVICFLK+YGL+KDFKINIEPNHTTLAGHCAEHD+V+A ++GMLGSIDANTGV HLGWDTDCFM+D QQTTLIMKTVLEQGGIAPGGLNFDAKVRREST+LEDMFIAHI GMDAFAKGL+GAAALLE+G+LP MV+ RYASY EGFGK+LAEG+A+LEECEA+V EHGEP  +SGSQEK+QSIFNTY
Sbjct:  314 MAAFFRMVVAYKAKIGATYQLLLEPKPKEPTAHQYDYDAQTVICFLKTYGLDKDFKINIEPNHTTLAGHCAEHDVVMASKFGMLGSIDANTGVAHLGWDTDCFMADPQQTTLIMKTVLEQGGIAPGGLNFDAKVRRESTALEDMFIAHIQGMDAFAKGLVGAAALLEEGLLPRMVAARYASYAEGFGKRLAEGQASLEECEAFVAEHGEPRLVSGSQEKFQSIFNTY 540
The following BLAST results are available for this feature:
BLAST of NO24G00830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21104.11.700e-11286.34xylose isomerase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00830NO24G00830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00830.1NO24G00830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00830.1.cds1NO24G00830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00830.1.cds2NO24G00830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00830.1.cds3NO24G00830.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00830.1.cds4NO24G00830.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00830.1.cds5NO24G00830.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00830.1 ID=NO24G00830.1|Name=NO24G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=687bp
ATGGCAGCGTTCTTCAAGATGGTAGTGGCGTACAAGGCCAAGATCGGGGC
GACTTACCAACTGCTCATTGAGCCCAAGCCCAAGGAGCCGTCCGCCCACC
AGTACGACTACGATGCCCAGACCGTCATCTGCTTCCTAAAGAGCTACGGT
CTGGAGAAAGACTTCAAGATCAACATTGAGCCCAATCACACCACTCTGGC
GGGGCACTGCGCCGAGCACGACATTGTGGTGGCGGGGCAATACGGGATGC
TTGGAAGCATCGACGCCAACACGGGGGTGCCGCACTTGGGCTGGGACACC
GACTGCTTCATGTCGGACACACAGCAGACCACTCTCATCATGAAAACCGT
TCTGGAACAAGGCGGAATCGCGCCCGGTGGTTTGAACTTCGACGCCAAGG
TCCGGCGGGAGTCCACCTCGCTTGAGGACATGTTCATTGCGCACATCTTG
GGGATGGACGCCTTCGCCAAGGGGCTGCTCGGGGCCGCGGCGCTGCTGGA
GGATGGGGTCTTACCCGCAATGGTGTCAAAGCGATACGCGAGCTACACCG
AGGGGTTTGGAAAGAAGCTTGCGGAGGGGAAGGCGACGTTGGAGGAGTGC
GAGGCCTATGTCATGGAGCATGGCGAGCCCACACAGATATCGGGGAGCCA
GGAGAAGTATCAGAGCATTTTTAATACCTATACTTGA
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protein sequence of NO24G00830.1

>NO24G00830.1-protein ID=NO24G00830.1-protein|Name=NO24G00830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MAAFFKMVVAYKAKIGATYQLLIEPKPKEPSAHQYDYDAQTVICFLKSYG
LEKDFKINIEPNHTTLAGHCAEHDIVVAGQYGMLGSIDANTGVPHLGWDT
DCFMSDTQQTTLIMKTVLEQGGIAPGGLNFDAKVRRESTSLEDMFIAHIL
GMDAFAKGLLGAAALLEDGVLPAMVSKRYASYTEGFGKKLAEGKATLEEC
EAYVMEHGEPTQISGSQEKYQSIFNTYT*
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mRNA from alignment at chr24:233965..235250+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00830.1 ID=NO24G00830.1|Name=NO24G00830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp|location=Sequence derived from alignment at chr24:233965..235250+ (Nannochloropsis oceanica)
ATGGCAGCGTTCTTCAAGATGGTAGTGGCGTACAAGGCCAAGATCGGGGC
GACTTACCAACTGCTCATTGGTGCGTGCATGTTTCCTTCGGCCGGACCGG
CAGATTTTGTTTCTGCACGCTTACTGTGTCCGTCTTTCTCGATTTCAGTC
TTTCGCTGAAGCCTATTTCTCTTTATTTTATTCTTTGCCTGTCCTAATCT
ATCCTCCGCCCGCCCTCCCTCTCTCCCTAGAGCCCAAGCCCAAGGAGCCG
TCCGCCCACCAGTACGACTACGATGCCCAGACCGTCATCTGCTTCCTAAA
GAGCTACGGTCTGGAGAAAGACTTCAAGGTTGGATGAATAAGAAAGGAAA
GGAAAGGGGCGAGAGGGGTGGAAGAGACTTAATATCTATCTCAAAAACTG
AGAAAAAGAGCACTGAACTTCCATTGCCCCCACCCCATCCATTCTCTCTC
CCTTCCCTTCTTTTCGATCTTCAACAGATCAACATTGAGCCCAATCACAC
CACTCTGGCGGGGCACTGCGCCGAGCACGACATTGTGGTGGCGGGGCAAT
ACGGGATGCTTGGAAGCATCGACGCCAACACGGGGGTGCCGCACTTGGGC
TGGGACACCGACTGCTTCATGTCGGACACACAGCAGGCACGGGGCAGGGG
GAGGGAGAGAAAGAGTGGTTGTGAAATATTGTTGGGTCCAAAGCACTGAC
TCGTGTAGCCGGCATCACTGGCCGTGCTAAAGCTGAAATTCGGCAAAGAT
GATAAGTTTCTGCCTCCACCTCTGACACAATCCCCTTCTCTTTCTTTCCT
TCTCCGTCCCCTCATTCCTACAGACCACTCTCATCATGAAAACCGTTCTG
GAACAAGGCGGAATCGCGCCCGGTGGTTTGAACTTCGACGCCAAGGTCCG
GCGGGAGTCCACCTCGCTTGAGGACATGTTCATTGCGCACATCTTGGGGA
TGGTGAGTGTCCGCTATTTCTTCATGGGTTCGCTCCTGTACTCATCATAT
TATTTTTTGTATTTTTGATTTTTAACATGTATAATTCATTAAAATTGTGT
AACAGGACGCCTTCGCCAAGGGGCTGCTCGGGGCCGCGGCGCTGCTGGAG
GATGGGGTCTTACCCGCAATGGTGTCAAAGCGATACGCGAGCTACACCGA
GGGGTTTGGAAAGAAGCTTGCGGAGGGGAAGGCGACGTTGGAGGAGTGCG
AGGCCTATGTCATGGAGCATGGCGAGCCCACACAGATATCGGGGAGCCAG
GAGAAGTATCAGAGCATTTTTAATACCTATACTTGA
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Coding sequence (CDS) from alignment at chr24:233965..235250+

>NO24G00830.1 ID=NO24G00830.1|Name=NO24G00830.1|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at chr24:233965..235250+ (Nannochloropsis oceanica)
ATGGCAGCGTTCTTCAAGATGGTAGTGGCGTACAAGGCCAAGATCGGGGC
GACTTACCAACTGCTCATTGAGCCCAAGCCCAAGGAGCCGTCCGCCCACC
AGTACGACTACGATGCCCAGACCGTCATCTGCTTCCTAAAGAGCTACGGT
CTGGAGAAAGACTTCAAGATCAACATTGAGCCCAATCACACCACTCTGGC
GGGGCACTGCGCCGAGCACGACATTGTGGTGGCGGGGCAATACGGGATGC
TTGGAAGCATCGACGCCAACACGGGGGTGCCGCACTTGGGCTGGGACACC
GACTGCTTCATGTCGGACACACAGCAGACCACTCTCATCATGAAAACCGT
TCTGGAACAAGGCGGAATCGCGCCCGGTGGTTTGAACTTCGACGCCAAGG
TCCGGCGGGAGTCCACCTCGCTTGAGGACATGTTCATTGCGCACATCTTG
GGGATGGACGCCTTCGCCAAGGGGCTGCTCGGGGCCGCGGCGCTGCTGGA
GGATGGGGTCTTACCCGCAATGGTGTCAAAGCGATACGCGAGCTACACCG
AGGGGTTTGGAAAGAAGCTTGCGGAGGGGAAGGCGACGTTGGAGGAGTGC
GAGGCCTATGTCATGGAGCATGGCGAGCCCACACAGATATCGGGGAGCCA
GGAGAAGTATCAGAGCATTTTTAATACCTATACTTGA
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Synonyms
Publications