NO24G00670.1, NO24G00670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00670.1
Unique NameNO24G00670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1904
Alignment locationchr24:206860..208862 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:206860..208862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00670.1 vs.
Match: EWM21138.1 (aspartate aminotransferase [Nannochloropsis gaditana])

HSP 1 Score: 658.7 bits (1698), Expect = 1.300e-185
Identity = 327/441 (74.15%), Postives = 358/441 (81.18%), Query Frame = 0 
Query:    1 MNGRFKDVPLLPPDAIIDLNRQIMVDTNPCKVDLGVGAYRDSHGKPYILDVVKAAEARVIADPMYNHEYVPIEGWAPFRLASQQVLFGAAHPVLTAGKLATVQALSGTGALRIGFEFLRRHVQQPPVVYLPSHTWGNHLKVVHESGISDVRKYRYYDPSTLSLDIEGMCADLAAAPAGSIILLHTSGHNPVGFDPSAEDWQRLARLCMEGGLLPFFDNAYQGYTSGSLEDDAYSVRLFASLGMDLFCACSFAKNMGLYGERVGALHALVSSPAEAQILVSQFQAIIRPMYSSPPSHYARVAGLILSDPALSSQWQAELREMAARIQRMRTLFLEALAESGCPGQWGHLARQRGMFGFTGLEREEVGRLKKEFSIYMLENGRISLSGFNEGNVAYVARAFAAVLAGRASTPGAACAARIEEKEGVEVETMAMASSSGRPECE 442
            M GRFK VPLLP D IIDLNRQI  D NP KVDLGVGAYRDS GKPY+LDVVKAAEARV+AD  YNHEYVPIEGWAPFRLASQ++LFG  HPV+ AG +ATVQALSGTGALR+GFEFLRR +  P VVYLPSHTWGNHLKV+ ESG  DVRKYRYYD + LSLD EGMCADL+AAP G+I+LLHTSGHNPVGFDPS  DW+RLA LC E  LLPFFDNAYQGYTSGSLE+DA+SVR FA+ G++L CACSFAKNMGLYGER+GALHA+VSSP E Q L+SQFQAIIRPMYSSPPSHYARVAGLILSDPAL   WQ EL+ MA RIQ MR LFLEAL    CPG+WGH+ARQRGMFGFTGL++E V  LKKE+SIYML+NGRISLSG NE NV YVARAFA VL   +             KE    ETM+M      PECE
Sbjct:   39 MGGRFKKVPLLPADTIIDLNRQIRNDNNPHKVDLGVGAYRDSSGKPYVLDVVKAAEARVVADTSYNHEYVPIEGWAPFRLASQKILFGPGHPVMAAGCVATVQALSGTGALRVGFEFLRRMIPDP-VVYLPSHTWGNHLKVLQESGFEDVRKYRYYDAARLSLDSEGMCADLSAAPPGAIVLLHTSGHNPVGFDPSVSDWERLAELCKEKDLLPFFDNAYQGYTSGSLEEDAFSVRFFAAQGLELLCACSFAKNMGLYGERIGALHAVVSSPLEVQSLISQFQAIIRPMYSSPPSHYARVAGLILSDPALFDAWQVELQRMAGRIQHMRELFLEALTRHACPGEWGHMARQRGMFGFTGLKKEHVAALKKEYSIYMLDNGRISLSGLNENNVDYVARAFAHVLRTESPQTETYSCVHTARKE----ETMSML-----PECE 469
The following BLAST results are available for this feature:
BLAST of NO24G00670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21138.11.300e-18574.15aspartate aminotransferase [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00670NO24G00670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00670.1NO24G00670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00670.1.cds1NO24G00670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00670.1.cds2NO24G00670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00670.1 ID=NO24G00670.1|Name=NO24G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1904bp
CACAGCGACTGCTCAGGCGGAAAGGCAAGCCAGCATCAGTTAGGATGAAC
GGACGCTTCAAAGATGTACCGCTACTTCCACCAGATGCGATCATCGACCT
CAATCGGCAGATCATGGTCGACACTAATCCCTGCAAAGTCGACCTAGGAG
TCGGTGCCTACAGGGACAGCCACGGTAAGCCCTACATCCTAGACGTCGTC
AAGGCCGCCGAGGCCCGCGTCATCGCCGACCCTATGTACAACCACGAGTA
CGTCCCCATTGAAGGTTGGGCTCCCTTCCGCCTCGCCAGCCAACAAGTGC
TCTTCGGGGCAGCACATCCTGTGCTCACCGCGGGGAAACTAGCGACAGTC
CAAGCCCTGTCTGGGACGGGTGCTTTGCGGATAGGCTTCGAGTTCTTGCG
ACGGCACGTGCAGCAGCCACCTGTGGTGTATTTACCCAGCCACACTTGGG
GGAACCATCTTAAAGTCGTGCACGAAAGTGGGATCAGCGACGTTCGAAAA
TATCGGTACTATGACCCGAGTACGCTGAGTCTGGATATCGAGGGGATGTG
CGCAGACCTTGCTGCTGCTCCTGCTGGTAGCATTATTTTGTTGCACACCT
CGGGGCACAACCCCGTCGGATTTGATCCGTCCGCGGAGGATTGGCAGAGG
CTGGCCCGGTTGTGCATGGAAGGGGGCCTGTTGCCGTTTTTCGACAATGC
CTACCAAGGCTACACGAGTGGGAGCCTGGAGGATGACGCCTACTCGGTCC
GCCTATTCGCCTCCCTCGGGATGGATCTCTTTTGCGCGTGCTCCTTCGCC
AAAAATATGGGCCTGTACGGAGAGCGCGTGGGGGCCTTGCATGCCCTTGT
ATCCTCCCCTGCAGAGGCCCAGATCCTCGTGAGCCAGTTCCAGGCGATCA
TCCGGCCCATGTACTCTTCTCCTCCGTCGCATTACGCGCGCGTGGCGGGG
TTAATATTGTCGGACCCAGCACTCTCAAGCCAATGGCAAGCGGAGTTGCG
GGAGATGGCAGCGAGGATCCAGAGGATGAGGACGCTGTTTTTGGAGGCGT
TGGCGGAGAGCGGGTGTCCGGGCCAGTGGGGGCACCTGGCGCGACAGAGA
GGCATGTTCGGGTTTACGGGGCTGGAGAGGGAGGAGGTGGGGAGGTTGAA
AAAGGAGTTTTCGATTTACATGCTGGAGAATGGGCGCATTTCTTTGAGTG
GCTTCAACGAGGGCAATGTGGCTTATGTGGCTCGGGCATTCGCCGCGGTG
CTGGCTGGAAGGGCGAGCACGCCGGGGGCTGCCTGCGCGGCAAGGATAGA
GGAGAAGGAAGGGGTAGAGGTGGAAACGATGGCGATGGCGTCGTCGTCTG
GTAGGCCGGAGTGCGAGGGCTTGGGAGATGGGAGGGTGGAGATGAACGCG
TCGCCACAGAATGCCCCGCACCTTTGAGTCCACATATAGCACAGCGCTTG
AGTTAGCTGTGTTCTTTTTAGAGGAAGGTGGAGATGAGAAGAATAGAGTG
AGAATTAGGAGGAGAGAGAGAGCTCAGAAAAGAAAAAAGAGATAACATAT
AGAGGGAGAGGTAAGTAAGAGAAGGAAAGAAAGAGAGAGAGAGAGAAAGA
GAGAAAGAAAAGAGAGAGAAAGACCACCACACTACCTAATGCCGCGCGTG
TGTGTCATCTCCCTTTCTTACGATCGCAGGCGGGTCTTTAGGGCTTCAGA
TTGGGCCTTGGGGTGTTTGGGTGTGTGATTGCGCGCCTTTGGACGGTGTC
TGTGCATGAGTGCATGAGGAACGGGATGAATGACTTTGACACATTTTGGA
TAACAGGAAAACTAAGAGGGATGGAAATGAGAAAGACGATAGTACATATC
GTGTTGCATTGATATTGAAAAGTGTAAAAGCAAAATTATTGTGTCATATT
TATC
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protein sequence of NO24G00670.1

>NO24G00670.1-protein ID=NO24G00670.1-protein|Name=NO24G00670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MNGRFKDVPLLPPDAIIDLNRQIMVDTNPCKVDLGVGAYRDSHGKPYILD
VVKAAEARVIADPMYNHEYVPIEGWAPFRLASQQVLFGAAHPVLTAGKLA
TVQALSGTGALRIGFEFLRRHVQQPPVVYLPSHTWGNHLKVVHESGISDV
RKYRYYDPSTLSLDIEGMCADLAAAPAGSIILLHTSGHNPVGFDPSAEDW
QRLARLCMEGGLLPFFDNAYQGYTSGSLEDDAYSVRLFASLGMDLFCACS
FAKNMGLYGERVGALHALVSSPAEAQILVSQFQAIIRPMYSSPPSHYARV
AGLILSDPALSSQWQAELREMAARIQRMRTLFLEALAESGCPGQWGHLAR
QRGMFGFTGLEREEVGRLKKEFSIYMLENGRISLSGFNEGNVAYVARAFA
AVLAGRASTPGAACAARIEEKEGVEVETMAMASSSGRPECEGLGDGRVEM
NASPQNAPHL*
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mRNA from alignment at chr24:206860..208862+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00670.1 ID=NO24G00670.1|Name=NO24G00670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2003bp|location=Sequence derived from alignment at chr24:206860..208862+ (Nannochloropsis oceanica)
CACAGCGACTGCTCAGGCGGAAAGGCAAGCCAGCATCAGTTAGGATGAAC
GGACGCTTCAAAGATGTACCGCTACTTCCACCAGATGCGATCATCGACCT
CAATCGGCAGATCATGGTGAGAAATGATCCCCAAAAGATCGACCTCCAAC
ACACCTACCATTCTCTCTCCATCTCACTCCCTCCCTCCACCCCTCTCCAC
CCTCCTGCAAAATAGGTCGACACTAATCCCTGCAAAGTCGACCTAGGAGT
CGGTGCCTACAGGGACAGCCACGGTAAGCCCTACATCCTAGACGTCGTCA
AGGCCGCCGAGGCCCGCGTCATCGCCGACCCTATGTACAACCACGAGTAC
GTCCCCATTGAAGGTTGGGCTCCCTTCCGCCTCGCCAGCCAACAAGTGCT
CTTCGGGGCAGCACATCCTGTGCTCACCGCGGGGAAACTAGCGACAGTCC
AAGCCCTGTCTGGGACGGGTGCTTTGCGGATAGGCTTCGAGTTCTTGCGA
CGGCACGTGCAGCAGCCACCTGTGGTGTATTTACCCAGCCACACTTGGGG
GAACCATCTTAAAGTCGTGCACGAAAGTGGGATCAGCGACGTTCGAAAAT
ATCGGTACTATGACCCGAGTACGCTGAGTCTGGATATCGAGGGGATGTGC
GCAGACCTTGCTGCTGCTCCTGCTGGTAGCATTATTTTGTTGCACACCTC
GGGGCACAACCCCGTCGGATTTGATCCGTCCGCGGAGGATTGGCAGAGGC
TGGCCCGGTTGTGCATGGAAGGGGGCCTGTTGCCGTTTTTCGACAATGCC
TACCAAGGCTACACGAGTGGGAGCCTGGAGGATGACGCCTACTCGGTCCG
CCTATTCGCCTCCCTCGGGATGGATCTCTTTTGCGCGTGCTCCTTCGCCA
AAAATATGGGCCTGTACGGAGAGCGCGTGGGGGCCTTGCATGCCCTTGTA
TCCTCCCCTGCAGAGGCCCAGATCCTCGTGAGCCAGTTCCAGGCGATCAT
CCGGCCCATGTACTCTTCTCCTCCGTCGCATTACGCGCGCGTGGCGGGGT
TAATATTGTCGGACCCAGCACTCTCAAGCCAATGGCAAGCGGAGTTGCGG
GAGATGGCAGCGAGGATCCAGAGGATGAGGACGCTGTTTTTGGAGGCGTT
GGCGGAGAGCGGGTGTCCGGGCCAGTGGGGGCACCTGGCGCGACAGAGAG
GCATGTTCGGGTTTACGGGGCTGGAGAGGGAGGAGGTGGGGAGGTTGAAA
AAGGAGTTTTCGATTTACATGCTGGAGAATGGGCGCATTTCTTTGAGTGG
CTTCAACGAGGGCAATGTGGCTTATGTGGCTCGGGCATTCGCCGCGGTGC
TGGCTGGAAGGGCGAGCACGCCGGGGGCTGCCTGCGCGGCAAGGATAGAG
GAGAAGGAAGGGGTAGAGGTGGAAACGATGGCGATGGCGTCGTCGTCTGG
TAGGCCGGAGTGCGAGGGCTTGGGAGATGGGAGGGTGGAGATGAACGCGT
CGCCACAGAATGCCCCGCACCTTTGAGTCCACATATAGCACAGCGCTTGA
GTTAGCTGTGTTCTTTTTAGAGGAAGGTGGAGATGAGAAGAATAGAGTGA
GAATTAGGAGGAGAGAGAGAGCTCAGAAAAGAAAAAAGAGATAACATATA
GAGGGAGAGGTAAGTAAGAGAAGGAAAGAAAGAGAGAGAGAGAGAAAGAG
AGAAAGAAAAGAGAGAGAAAGACCACCACACTACCTAATGCCGCGCGTGT
GTGTCATCTCCCTTTCTTACGATCGCAGGCGGGTCTTTAGGGCTTCAGAT
TGGGCCTTGGGGTGTTTGGGTGTGTGATTGCGCGCCTTTGGACGGTGTCT
GTGCATGAGTGCATGAGGAACGGGATGAATGACTTTGACACATTTTGGAT
AACAGGAAAACTAAGAGGGATGGAAATGAGAAAGACGATAGTACATATCG
TGTTGCATTGATATTGAAAAGTGTAAAAGCAAAATTATTGTGTCATATTT
ATC
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Coding sequence (CDS) from alignment at chr24:206860..208862+

>NO24G00670.1 ID=NO24G00670.1|Name=NO24G00670.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr24:206860..208862+ (Nannochloropsis oceanica)
ATGAACGGACGCTTCAAAGATGTACCGCTACTTCCACCAGATGCGATCAT
CGACCTCAATCGGCAGATCATGGTCGACACTAATCCCTGCAAAGTCGACC
TAGGAGTCGGTGCCTACAGGGACAGCCACGGTAAGCCCTACATCCTAGAC
GTCGTCAAGGCCGCCGAGGCCCGCGTCATCGCCGACCCTATGTACAACCA
CGAGTACGTCCCCATTGAAGGTTGGGCTCCCTTCCGCCTCGCCAGCCAAC
AAGTGCTCTTCGGGGCAGCACATCCTGTGCTCACCGCGGGGAAACTAGCG
ACAGTCCAAGCCCTGTCTGGGACGGGTGCTTTGCGGATAGGCTTCGAGTT
CTTGCGACGGCACGTGCAGCAGCCACCTGTGGTGTATTTACCCAGCCACA
CTTGGGGGAACCATCTTAAAGTCGTGCACGAAAGTGGGATCAGCGACGTT
CGAAAATATCGGTACTATGACCCGAGTACGCTGAGTCTGGATATCGAGGG
GATGTGCGCAGACCTTGCTGCTGCTCCTGCTGGTAGCATTATTTTGTTGC
ACACCTCGGGGCACAACCCCGTCGGATTTGATCCGTCCGCGGAGGATTGG
CAGAGGCTGGCCCGGTTGTGCATGGAAGGGGGCCTGTTGCCGTTTTTCGA
CAATGCCTACCAAGGCTACACGAGTGGGAGCCTGGAGGATGACGCCTACT
CGGTCCGCCTATTCGCCTCCCTCGGGATGGATCTCTTTTGCGCGTGCTCC
TTCGCCAAAAATATGGGCCTGTACGGAGAGCGCGTGGGGGCCTTGCATGC
CCTTGTATCCTCCCCTGCAGAGGCCCAGATCCTCGTGAGCCAGTTCCAGG
CGATCATCCGGCCCATGTACTCTTCTCCTCCGTCGCATTACGCGCGCGTG
GCGGGGTTAATATTGTCGGACCCAGCACTCTCAAGCCAATGGCAAGCGGA
GTTGCGGGAGATGGCAGCGAGGATCCAGAGGATGAGGACGCTGTTTTTGG
AGGCGTTGGCGGAGAGCGGGTGTCCGGGCCAGTGGGGGCACCTGGCGCGA
CAGAGAGGCATGTTCGGGTTTACGGGGCTGGAGAGGGAGGAGGTGGGGAG
GTTGAAAAAGGAGTTTTCGATTTACATGCTGGAGAATGGGCGCATTTCTT
TGAGTGGCTTCAACGAGGGCAATGTGGCTTATGTGGCTCGGGCATTCGCC
GCGGTGCTGGCTGGAAGGGCGAGCACGCCGGGGGCTGCCTGCGCGGCAAG
GATAGAGGAGAAGGAAGGGGTAGAGGTGGAAACGATGGCGATGGCGTCGT
CGTCTGGTAGGCCGGAGTGCGAGGGCTTGGGAGATGGGAGGGTGGAGATG
AACGCGTCGCCACAGAATGCCCCGCACCTTTGA
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Synonyms
Publications