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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr24 | genome | chr24:109109..113801 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00320.2 vs.
Match: EWM27402.1 (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana]) HSP 1 Score: 68.2 bits (165), Expect = 1.000e-7 Identity = 75/255 (29.41%), Postives = 109/255 (42.75%), Query Frame = 0
Query: 109 RQGWAMAMGELLSQGCLEDTK---ANGFIRMMEGFARGQRPNCQINDPSAGVVPSLVTLLSTA--RIQDDKGSSSQGEVNKMSPKAFLIH--------DAESLYQRLTKDEGACFLVEE-SFHGNRTVECNARMAELFISTRELQGLVDQTGLAVGHLMMRLVHCPDHRLILVRELATMALKRFGKASIDMPLTC-------ESRHGALLRCLASIGVTI-------------YPCGRHVLIFRHLTDASTRTSS 330
R G + A+ L +QG L+ K A IR ARG + D +AGV+P L LL T + + G V + P A L Q+L DE AC++V + G +V CN RM+ELFIS+ EL+GL QT +A+ R + P L+ + + ++ S+D+ L C S A +CLA++G+ I PCGR L R ++ R S
Sbjct: 303 RNGVSGAIARLAAQGMLDWEKVFNARALIRACSQ-ARG------VADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPG-LYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGRS 549
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00320.2 ID=NO24G00320.2|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp ATGTTTCTCCGTCCTACATCTTCTTGCGCACATTCACCCAACACTACCAG CAGCGGCAGAAACGGCAGCAGCGGCAGCAGCGGCAGCAGCAGCAGCCGCA GCAGCAGCAGCAGTAGCAGCAGTAGCAACAGTAGCACGATTCTTGCGCTC CGACGGCCCATCCTTCTTTCTCTTCCTCCCTCCCTCTCTTCCAGCCACCA CAAGACGGAAGCGGAGAGAGAGGAAGGGGGAGGGAGGGAGGGAGGACAGA AATTGCAGCGTGTGGGCGCACCGTCGGTGATAATGGGGTGGCTCTTATCG AGTGACAGGGTCCTCAGGACAGTCCGACAGGGCTGGGCCATGGCGATGGG CGAGCTGCTCAGCCAGGGCTGCTTGGAGGACACTAAAGCCAATGGATTCA TTCGGATGATGGAGGGGTTCGCACGTGGCCAGCGGCCCAACTGCCAAATT AATGATCCCTCTGCCGGCGTCGTCCCTTCGCTTGTGACGCTCCTTTCGAC TGCCCGCATCCAGGATGACAAAGGGAGCAGCAGCCAGGGGGAGGTTAATA AAATGAGCCCCAAAGCCTTTCTCATCCATGACGCCGAGTCGCTGTATCAA CGGCTGACCAAGGACGAAGGCGCCTGCTTCCTGGTGGAAGAGAGCTTCCA CGGCAATCGAACTGTCGAGTGCAATGCCCGGATGGCCGAGCTCTTCATTT CCACGCGCGAGCTCCAAGGTCTCGTGGACCAAACGGGCCTCGCTGTCGGA CACCTCATGATGCGCCTCGTTCATTGCCCCGACCACCGGCTGATACTCGT CCGCGAGCTGGCCACTATGGCACTTAAGCGCTTCGGAAAAGCCTCCATTG ATATGCCTCTCACGTGCGAATCTCGCCACGGCGCCCTCCTTCGCTGCCTG GCCTCCATCGGAGTCACCATATATCCTTGCGGGAGGCATGTATTAATCTT TCGCCACCTGACCGACGCAAGTACTCGCACGAGCAGTGAGGAGTCCTCCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCA GGCACTGCTACGACCCCTCCCTCCCTTCTTCCCTCCCTCCCTCTCTCCCT CCCTCCCTCCCTCTCTTTGTCATCCACCCGACTGGTGCCACGGCCTCTGC GTTTCACGTCAGAAGGTCGTCCTGTCCTCCTTTCCCTCTCTCCCCGTTTC ACTTCAATGCAGCAGCTTGGGCATGGGCGAGGAAGGGGGGGAGGAAGTAG CAGGAAGGGGAAGAAAAAGAAGGAAGAGAAGCAACGGTCACAGCGACAGC AACAGCAACAACAACAGCAGCAGCAGCCGCCTCAAGAGCAGCAGCAACAA GAACAGAATTCAGGAGAAGCTTCCTCCTTCTTCCAGCCTACATCGAGAGA GAAGGAAGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGCGGGCCTGGGGTC CATCAAGGGCTGCAGCGAGAGAAGCAGCATCAGACACTAAGAAAGCGTCA AAGAGAAGGCAGAATTGTAACAGCTCCAGCGACAGCAGCACCAGCAGTAA CAGCACCAGCAGTAACAGCACAAGCAGAGTCATCATCCACAGGGCTGGCA CGGAGAACCCCACTTGCCCGAGGAGGAGGAAGGGCAAAGATGGCTGCACC AGCAGCTGCAGCAGCGGCACTGCCGGACAAGGAGGGATGAAGGAAGGGAA CGTGGGATCTATCTCCTCCTTTCTCTCTGATGCCATCGCGCTGCTTCCTT CCTCCTCAACCCCGTCCTCCTCCTCTTCCTCGCCGGAAGTAGGGGCGACC CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAAGTGACCAGTAAG GAGGCTGACGTGGTGGCCGCTCTACTGGGAATGAATCGGGCTCTGTAAAT AATAGCTGGAAGACGGGGTAAAAAGGAAGGCAGGTGGTAGAAATGTGAAG GAGGATGGAAAGGGAATTAAAGATAGGAAGTTGAACCAGTAGAGGAGGGA AAAGTAGAAGAAATGAAAGAATGCAAGTGACTCATCTCCTGAGGAAGATA ATGAGGGTGAGGGACGGGTCCTCAGGAGGAGGGAATGGTAGCCAGATAGA GAGAGACGGCGAGAGACGACGCTCCCACCGTGACGTAGTGAGGGAGAGAG GAACAGCAACAGCAAGAGAGAGCAAGCAAATGTACAAATACACCCTCCTG ATAATTATCTTCGTGGCAG back to topprotein sequence of NO24G00320.2 >NO24G00320.2-protein ID=NO24G00320.2-protein|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp MFLRPTSSCAHSPNTTSSGRNGSSGSSGSSSSRSSSSSSSSSNSSTILAL RRPILLSLPPSLSSSHHKTEAEREEGGGREGGQKLQRVGAPSVIMGWLLS SDRVLRTVRQGWAMAMGELLSQGCLEDTKANGFIRMMEGFARGQRPNCQI NDPSAGVVPSLVTLLSTARIQDDKGSSSQGEVNKMSPKAFLIHDAESLYQ RLTKDEGACFLVEESFHGNRTVECNARMAELFISTRELQGLVDQTGLAVG HLMMRLVHCPDHRLILVRELATMALKRFGKASIDMPLTCESRHGALLRCL ASIGVTIYPCGRHVLIFRHLTDASTRTSSEESSSSSSSSSSSSSSSSSSS GTATTPPSLLPSLPLSLPPSLSLSSTRLVPRPLRFTSEGRPVLLSLSPRF TSMQQLGHGRGRGGGSSRKGKKKKEEKQRSQRQQQQQQQQQQPPQEQQQQ EQNSGEASSFFQPTSREKEGGREGEREGGRAWGPSRAAAREAASDTKKAS KRRQNCNSSSDSSTSSNSTSSNSTSRVIIHRAGTENPTCPRRRKGKDGCT SSCSSGTAGQGGMKEGNVGSISSFLSDAIALLPSSSTPSSSSSSPEVGAT PSLPPSLPPSLPK* back to topmRNA from alignment at chr24:109109..113801- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00320.2 ID=NO24G00320.2|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=mRNA|length=4693bp|location=Sequence derived from alignment at chr24:109109..113801- (Nannochloropsis oceanica) ATGTTTCTCCGTCCTACATCTTCTTGCGCACATTCACCCAACACTACCAG
CAGCGGCAGAAACGGCAGCAGCGGCAGCAGCGGCAGCAGCAGCAGCCGCA
GCAGCAGCAGCAGTAGCAGCAGTAGCAACAGTAGCACGATTCTTGCGCTC
CGACGGCCCATCCTTCTTTCTCTTCCTCCCTCCCTCTCTTCCAGCCACCA
CAAGACGGAAGCGGAGAGAGAGGAAGGGGGAGGGAGGGAGGGAGGACAGA
AATTGCAGCGTGTGGGCGCACCGTCGGTGATAATGGGGTGGCTCTTATCG
AGTGACAGGGTAAGCTAGAGAAGAGATTAAGAGAGGGAAGAGAGTGGGGA
AAGGGGGAGGGAAGGAGAGACGAAGGAAGGAAGGGAAGAAGAACGCTTGA
TTTGAATTTCTTTTCATAAACAAACTCAACTGTCCCTCCCTCCCTTCATC
CGGCCCTCCTTCTCTCCCTCCCCTCAGGTCCTCAGGACAGTCCGACAGGG
CTGGGCCATGGCGATGGGCGAGCTGCTCAGCCAGGGCTGCTTGGAGGACA
CTAAAGCCAATGGATTCATGTACGGAGGGAGGGCAGGATGTTGGAAGCAT
ACGATCGGGCCTTTAGATTGTAGTTGCTACGAGCACTTAGTCCCTGTCTC
TCTCTCATTCCCTTTCTCCTTTCCCTCCCTCCCTCCCTTCCTTCCTTCCC
TTCTTCCTGCCTAGTCGGATGATGGAGGGGTTCGCACGTGGCCAGCGGCC
CAACTGCCAAATTAATGATCCCTCTGCCGGCGTCGTCCCTTCGCTTGTGA
CGCTCCTTTCGACTGCCCGCATCCAGGATGGTAAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGAGCAGGGGAGGCTCCCGCTGCCCCAGTATTGTTCGTG
TCACTTCAAGAAGAAGGAGGGCGGGAGGAAGGTCGAAAGGGGGGGAAGGG
ATATGAGCTCCTGGTTGTCTTTATTATTTGCCTTATACTAACACCTGGGC
CTACCTCTATATGTAAAGACAAAGGGAGCAGCAGCCAGGGGGAGGTTAAT
AAAATGAGCCCCAAAGCCTTTCTCATCCATGACGCCGAGTCGCTGTATCA
ACGGCTGACCAAGGACGAAGGTGGGCCTTCCCTCCCTCCCTCCCTCCCTC
CCTCCTCCTCCCTCTATCTCTACTCCCTTCCTTCCTTTGGTTCTCTTCTT
TCCTTTTGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTCC
CTCCTCCTCCCTCCCTCCCTCCCCAGGCGCCTGCTTCCTGGTGGAAGAGA
GCTTCCACGGCAATCGAACTGTCGAGTAAGGAGAAGAAGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAAGAGGGAAGATAGGTGCATGTAGATCGACGA
GAGGAAAGAGAGAAGTCTAAAATCCAACACCCCAAAAAAAACACCCTCTC
TCCCTCCCTCCCTCCCTCCCTAGGTGCAATGCCCGGATGGCCGAGCTCTT
CATTTCCACGCGCGAGCTCCAAGGTCTCGTGGACCAAACGGGCCTCGCTG
TCGGACACCTCATGATGCGGTGCGTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTCCCTTCCTACCTTGTTGGTAACACTTTGGCAGTAAGAAG
GCTCTTCCCCTCATCCTCCTTCCCTCCCATTCCCCTTCCTTCGTTTCCCA
TGGGCAAATTCTCTCACTCGCATTCCTCATTACACCTCCCTCCCTCCCTC
CCTCCTCCCTCCCTAGCCTCGTTCATTGCCCCGACCACCGGCTGATACTC
GTCCGCGAGCTGGCCACTATGGCACTTAAGCGCTTCGGAAAAGCCTCCAT
TGATATGCCTCTCACGGTGAGCCCTCCCTCTATCCCTTCTTCCCGTTCAC
CATGGCCGCGTCCATTCTCATCCTGCTCCCTCTCCCTCCCTTTCCCTCCC
TCCTTGCCTCCCTCCCTTCACCCTCTAGTGCGAATCTCGCCACGGCGCCC
TCCTTCGCTGCCTGGCCTCCATCGGAGTCACCATATATCCTTGCGGGAGG
CATGTATTAATCTTTCGTATCTTCCCCTTGGCACGCGCGACCTCGCCCTT
CCCTTCACCGCCGCCCTCCCTTCCTCCACCTTGAGGGAGGGAAGGAGGGA
GCAAGCCACCGTGGCAACGACGACGGAAGGGAGGAAGGGAGAGAGAGAGG
GAAGGAGGGAAGAGGGTGTGGGCTCAGCCCCTCCTCTTCAATCACCGACG
ATCATCCGCCCCTCCTCCCTCCCCCACCTCCCTCCACCCCGAGTCCCTCT
CTCCCTCCCTCCCTCCCTCCCTTCTCGGAGGCCACCTGACCGACGCAAGT
ACTCGCACGAGCAGTGAGGAGTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCAGGCACTGCTACGACCCCTCCCT
CCCTTCTTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTTTGTCA
TCCACCCGACTGGTGCCACGGCCTCTGGTAAGCAAGGAGGGAGGGAGAGA
GGGAGGGAGGGAGGGAGGTTAAGGAGGGAGAGAAAGGCATGATAAATTGC
ATAGATCCGTATACCACACATGCTGACCACGCGCCCTCCCTCCCTCCTTC
CCTCCCTCCTTCCTCCCCTCCCTCCTTCCTTCCTCCAGCGTTTCACGTCA
GAAGGTCGTCCTGTCCTCCTTTCCCTCTCTCCCCGTTTCACTTCAATGCA
GCAGCTTGGGCATGGGCGAGGAAGGGGGGGAGGAAGTAGCAGGAAGGGGA
AGAAAAAGAAGGAAGAGAAGCAACGGTCACAGCGACAGCAACAGCAACAA
CAACAGCAGCAGCAGCCGCCTCAAGAGCAGCAGCAACAAGAACAGAATTC
AGGAGAAGCTTCCTCCTTCTTCCAGCCTACATCGAGAGAGAAGGAAGGAG
GGAGGGAGGGAGAGAGGGAGGGAGGGCGGGCCTGGGGTCCATCAAGGGCT
GCAGCGAGAGAAGCAGCATCAGACACTAAGAAAGCGTCAAAGAGAAGGTA
GGCATCCCTCCTTTTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTC
CCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTTTTTCCC
TCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTC
CCTCCTTTTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCC
TCTTTCTTTCCCTCCCGCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTC
CTTCTTTCCCTCCCGCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCT
TCTTTCCCTCCCTCTTTCTTTCCCTCCCGCCTTCTTTCCCTCCCTCCTTC
TTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTTTTTCCCTCCCTCCTTCTT
TCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTTTTTC
CCTCCCTCCTTCTTTCCCTCCCTCCTTTTTTCCCTCCCTCCTTCTTTCCC
TCCCTCCTTCGTTCCCTCCCGCCTTCTTTCCCTCCCTCCTTCTTTCCCTC
CCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCGCCTTCTTTCCCTCCC
TCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCGC
CTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTTCCTCCCTCCTGGGCTTCG
GCTTACCGTTCAGTAGATCTGTATCTTGATATCCGCTTCTCACCTCCCTC
ATTCCCTCATTCCCTCTTCTTCTTACGTGAAGCCTTTCAGGCTCATCTGT
TTTCACTGCAAGCTCCCTACCCCATCCGTGCCCCGCTTTCTCCTCCTCTT
CTTCCTCCTCCTCCTCCTTCACACGTCCTCCACCTTCCATCTTTCCTCTC
CCAACGGGCCCAATTACTGACGTGTCCAATAGGCAGAATTGTAACAGCTC
CAGCGACAGCAGCACCAGCAGTAACAGCACCAGCAGTAACAGCACAAGCA
GAGTCATCATCCACAGGGCTGGCACGGAGAACCCCACTTGCCCGAGGAGG
AGGAAGGGCAAAGATGGCTGCACCAGCAGCTGCAGCAGCGGCACTGCCGG
ACAAGGAGGGATGAAGGAAGGGAACGTGGGATCTATCTCCTCCTTTCTCT
CTGATGCCATCGCGCTGCTTCCTTCCTCCTCAACCCCGTCCTCCTCCTCT
TCCTCGCCGGAAGTAGGGGCGACCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCCAAGTGACCAGTAAGGAGGCTGACGTGGTGGCCGCTCTACT
GGGAATGAATCGGGCTCTGTAAATAATAGCTGGAAGACGGGGTAAAAAGG
AAGGCAGGTGGTAGAAATGTGAAGGAGGATGGAAAGGGAATTAAAGATAG
GAAGTTGAACCAGTAGAGGAGGGAAAAGTAGAAGAAATGAAAGAATGCAA
GTGACTCATCTCCTGAGGAAGATAATGAGGGTGAGGGACGGGTCCTCAGG
AGGAGGGAATGGTAGCCAGATAGAGAGAGACGGCGAGAGACGACGCTCCC
ACCGTGACGTAGTGAGGGAGAGAGGAACAGCAACAGCAAGAGAGAGCAAG
CAAATGTACAAATACACCCTCCTGATAATTATCTTCGTGGCAG back to topCoding sequence (CDS) from alignment at chr24:109109..113801- >NO24G00320.2 ID=NO24G00320.2|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr24:109109..113801- (Nannochloropsis oceanica) ATGTTTCTCCGTCCTACATCTTCTTGCGCACATTCACCCAACACTACCAG CAGCGGCAGAAACGGCAGCAGCGGCAGCAGCGGCAGCAGCAGCAGCCGCA GCAGCAGCAGCAGTAGCAGCAGTAGCAACAGTAGCACGATTCTTGCGCTC CGACGGCCCATCCTTCTTTCTCTTCCTCCCTCCCTCTCTTCCAGCCACCA CAAGACGGAAGCGGAGAGAGAGGAAGGGGGAGGGAGGGAGGGAGGACAGA AATTGCAGCGTGTGGGCGCACCGTCGGTGATAATGGGGTGGCTCTTATCG AGTGACAGGGTCCTCAGGACAGTCCGACAGGGCTGGGCCATGGCGATGGG CGAGCTGCTCAGCCAGGGCTGCTTGGAGGACACTAAAGCCAATGGATTCA TTCGGATGATGGAGGGGTTCGCACGTGGCCAGCGGCCCAACTGCCAAATT AATGATCCCTCTGCCGGCGTCGTCCCTTCGCTTGTGACGCTCCTTTCGAC TGCCCGCATCCAGGATGACAAAGGGAGCAGCAGCCAGGGGGAGGTTAATA AAATGAGCCCCAAAGCCTTTCTCATCCATGACGCCGAGTCGCTGTATCAA CGGCTGACCAAGGACGAAGGCGCCTGCTTCCTGGTGGAAGAGAGCTTCCA CGGCAATCGAACTGTCGAGTGCAATGCCCGGATGGCCGAGCTCTTCATTT CCACGCGCGAGCTCCAAGGTCTCGTGGACCAAACGGGCCTCGCTGTCGGA CACCTCATGATGCGCCTCGTTCATTGCCCCGACCACCGGCTGATACTCGT CCGCGAGCTGGCCACTATGGCACTTAAGCGCTTCGGAAAAGCCTCCATTG ATATGCCTCTCACGTGCGAATCTCGCCACGGCGCCCTCCTTCGCTGCCTG GCCTCCATCGGAGTCACCATATATCCTTGCGGGAGGCATGTATTAATCTT TCGCCACCTGACCGACGCAAGTACTCGCACGAGCAGTGAGGAGTCCTCCT CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCA GGCACTGCTACGACCCCTCCCTCCCTTCTTCCCTCCCTCCCTCTCTCCCT CCCTCCCTCCCTCTCTTTGTCATCCACCCGACTGGTGCCACGGCCTCTGC GTTTCACGTCAGAAGGTCGTCCTGTCCTCCTTTCCCTCTCTCCCCGTTTC ACTTCAATGCAGCAGCTTGGGCATGGGCGAGGAAGGGGGGGAGGAAGTAG CAGGAAGGGGAAGAAAAAGAAGGAAGAGAAGCAACGGTCACAGCGACAGC AACAGCAACAACAACAGCAGCAGCAGCCGCCTCAAGAGCAGCAGCAACAA GAACAGAATTCAGGAGAAGCTTCCTCCTTCTTCCAGCCTACATCGAGAGA GAAGGAAGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGCGGGCCTGGGGTC CATCAAGGGCTGCAGCGAGAGAAGCAGCATCAGACACTAAGAAAGCGTCA AAGAGAAGGCAGAATTGTAACAGCTCCAGCGACAGCAGCACCAGCAGTAA CAGCACCAGCAGTAACAGCACAAGCAGAGTCATCATCCACAGGGCTGGCA CGGAGAACCCCACTTGCCCGAGGAGGAGGAAGGGCAAAGATGGCTGCACC AGCAGCTGCAGCAGCGGCACTGCCGGACAAGGAGGGATGAAGGAAGGGAA CGTGGGATCTATCTCCTCCTTTCTCTCTGATGCCATCGCGCTGCTTCCTT CCTCCTCAACCCCGTCCTCCTCCTCTTCCTCGCCGGAAGTAGGGGCGACC CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAAGTGA back to top
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