Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr24 genome chr24:109109..113801 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00320.2 vs.
Match: EWM27402.1 (hypothetical protein Naga_100212g6 [Nannochloropsis gaditana])
HSP 1 Score: 68.2 bits (165), Expect = 1.000e-7
Identity = 75/255 (29.41%), Postives = 109/255 (42.75%), Query Frame = 0
Query: 109 RQGWAMAMGELLSQGCLEDTK---ANGFIRMMEGFARGQRPNCQINDPSAGVVPSLVTLLSTA--RIQDDKGSSSQGEVNKMSPKAFLIH--------DAESLYQRLTKDEGACFLVEE-SFHGNRTVECNARMAELFISTRELQGLVDQTGLAVGHLMMRLVHCPDHRLILVRELATMALKRFGKASIDMPLTC-------ESRHGALLRCLASIGVTI-------------YPCGRHVLIFRHLTDASTRTSS 330
R G + A+ L +QG L+ K A IR ARG + D +AGV+P L LL T + + G V + P A L Q+L DE AC++V + G +V CN RM+ELFIS+ EL+GL QT +A+ R + P L+ + + ++ S+D+ L C S A +CLA++G+ I PCGR L R ++ R S
Sbjct: 303 RNGVSGAIARLAAQGMLDWEKVFNARALIRACSQ-ARG------VADMTAGVLPLLDHLLDTQPQAFAPKRRKAKSGGVGERGPPAGGAQGNSAGGDPSISQLIQQLAADENACYVVASVNATGIESVWCNDRMSELFISSEELEGLKSQTRMAIYSFWPRFLSGPG-LYELMGAFSAIMVQSTHTPSLDVILECCVQRAVKGSERPAPTKCLATVGMIINRLREGNVLILRLLPCGRSDLKSRRRQESRARGRS 549
The following BLAST results are available for this feature:
BLAST of NO24G00320.2 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Expect = 1.00e-7 / Id = 29.41 Sequence EWM27402.1
Match Name E-value Identity Description
EWM27402.1 1.000e-7 29.41 hypothetical protein Naga_100212g6 [Nannochloropsi... [more]
back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO24G00320.2 ID=NO24G00320.2|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp back to top protein sequence of NO24G00320.2
>NO24G00320.2-protein ID=NO24G00320.2-protein|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=614bp back to top mRNA from alignment at chr24:109109..113801-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00320.2 ID=NO24G00320.2|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=mRNA|length=4693bp|location=Sequence derived from alignment at chr24:109109..113801- (Nannochloropsis oceanica)ATGTTTCTCCGTCCTACATCTTCTTGCGCACATTCACCCAACACTACCAG
CAGCGGCAGAAACGGCAGCAGCGGCAGCAGCGGCAGCAGCAGCAGCCGCA
GCAGCAGCAGCAGTAGCAGCAGTAGCAACAGTAGCACGATTCTTGCGCTC
CGACGGCCCATCCTTCTTTCTCTTCCTCCCTCCCTCTCTTCCAGCCACCA
CAAGACGGAAGCGGAGAGAGAGGAAGGGGGAGGGAGGGAGGGAGGACAGA
AATTGCAGCGTGTGGGCGCACCGTCGGTGATAATGGGGTGGCTCTTATCG
AGTGACAGG GTAAGCTAGAGAAGAGATTAAGAGAGGGAAGAGAGTGGGGA
AAGGGGGAGGGAAGGAGAGACGAAGGAAGGAAGGGAAGAAGAACGCTTGA
TTTGAATTTCTTTTCATAAACAAACTCAACTGTCCCTCCCTCCCTTCATC
CGGCCCTCCTTCTCTCCCTCCCCTCAGGTCCTCAGGACAGTCCGACAGGG
CTGGGCCATGGCGATGGGCGAGCTGCTCAGCCAGGGCTGCTTGGAGGACA
CTAAAGCCAATGGATTCAT GTACGGAGGGAGGGCAGGATGTTGGAAGCAT
ACGATCGGGCCTTTAGATTGTAGTTGCTACGAGCACTTAGTCCCTGTCTC
TCTCTCATTCCCTTTCTCCTTTCCCTCCCTCCCTCCCTTCCTTCCTTCCC
TTCTTCCTGCCTAGTCGGATGATGGAGGGGTTCGCACGTGGCCAGCGGCC
CAACTGCCAAATTAATGATCCCTCTGCCGGCGTCGTCCCTTCGCTTGTGA
CGCTCCTTTCGACTGCCCGCATCCAGGATG GTAAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGAGCAGGGGAGGCTCCCGCTGCCCCAGTATTGTTCGTG
TCACTTCAAGAAGAAGGAGGGCGGGAGGAAGGTCGAAAGGGGGGGAAGGG
ATATGAGCTCCTGGTTGTCTTTATTATTTGCCTTATACTAACACCTGGGC
CTACCTCTATATGTAAAGACAAAGGGAGCAGCAGCCAGGGGGAGGTTAAT
AAAATGAGCCCCAAAGCCTTTCTCATCCATGACGCCGAGTCGCTGTATCA
ACGGCTGACCAAGGACGAAG GTGGGCCTTCCCTCCCTCCCTCCCTCCCTC
CCTCCTCCTCCCTCTATCTCTACTCCCTTCCTTCCTTTGGTTCTCTTCTT
TCCTTTTGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTCC
CTCCTCCTCCCTCCCTCCCTCCCCAGGCGCCTGCTTCCTGGTGGAAGAGA
GCTTCCACGGCAATCGAACTGTCGA GTAAGGAGAAGAAGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAAGAGGGAAGATAGGTGCATGTAGATCGACGA
GAGGAAAGAGAGAAGTCTAAAATCCAACACCCCAAAAAAAACACCCTCTC
TCCCTCCCTCCCTCCCTCCCTAGGTGCAATGCCCGGATGGCCGAGCTCTT
CATTTCCACGCGCGAGCTCCAAGGTCTCGTGGACCAAACGGGCCTCGCTG
TCGGACACCTCATGATGCG GTGCGTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTCCCTTCCTACCTTGTTGGTAACACTTTGGCAGTAAGAAG
GCTCTTCCCCTCATCCTCCTTCCCTCCCATTCCCCTTCCTTCGTTTCCCA
TGGGCAAATTCTCTCACTCGCATTCCTCATTACACCTCCCTCCCTCCCTC
CCTCCTCCCTCCCTAGCCTCGTTCATTGCCCCGACCACCGGCTGATACTC
GTCCGCGAGCTGGCCACTATGGCACTTAAGCGCTTCGGAAAAGCCTCCAT
TGATATGCCTCTCACG GTGAGCCCTCCCTCTATCCCTTCTTCCCGTTCAC
CATGGCCGCGTCCATTCTCATCCTGCTCCCTCTCCCTCCCTTTCCCTCCC
TCCTTGCCTCCCTCCCTTCACCCTCTAGTGCGAATCTCGCCACGGCGCCC
TCCTTCGCTGCCTGGCCTCCATCGGAGTCACCATATATCCTTGCGGGAGG
CATGTATTAATCTTTC GTATCTTCCCCTTGGCACGCGCGACCTCGCCCTT
CCCTTCACCGCCGCCCTCCCTTCCTCCACCTTGAGGGAGGGAAGGAGGGA
GCAAGCCACCGTGGCAACGACGACGGAAGGGAGGAAGGGAGAGAGAGAGG
GAAGGAGGGAAGAGGGTGTGGGCTCAGCCCCTCCTCTTCAATCACCGACG
ATCATCCGCCCCTCCTCCCTCCCCCACCTCCCTCCACCCCGAGTCCCTCT
CTCCCTCCCTCCCTCCCTCCCTTCTCGGAGGCCACCTGACCGACGCAAGT
ACTCGCACGAGCAGTGAGGAGTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCAGGCACTGCTACGACCCCTCCCT
CCCTTCTTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCTCTTTGTCA
TCCACCCGACTGGTGCCACGGCCTCTG GTAAGCAAGGAGGGAGGGAGAGA
GGGAGGGAGGGAGGGAGGTTAAGGAGGGAGAGAAAGGCATGATAAATTGC
ATAGATCCGTATACCACACATGCTGACCACGCGCCCTCCCTCCCTCCTTC
CCTCCCTCCTTCCTCCCCTCCCTCCTTCCTTCCTCCAGCGTTTCACGTCA
GAAGGTCGTCCTGTCCTCCTTTCCCTCTCTCCCCGTTTCACTTCAATGCA
GCAGCTTGGGCATGGGCGAGGAAGGGGGGGAGGAAGTAGCAGGAAGGGGA
AGAAAAAGAAGGAAGAGAAGCAACGGTCACAGCGACAGCAACAGCAACAA
CAACAGCAGCAGCAGCCGCCTCAAGAGCAGCAGCAACAAGAACAGAATTC
AGGAGAAGCTTCCTCCTTCTTCCAGCCTACATCGAGAGAGAAGGAAGGAG
GGAGGGAGGGAGAGAGGGAGGGAGGGCGGGCCTGGGGTCCATCAAGGGCT
GCAGCGAGAGAAGCAGCATCAGACACTAAGAAAGCGTCAAAGAGAAG GTA
GGCATCCCTCCTTTTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTC
CCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTTTTTCCC
TCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTC
CCTCCTTTTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCC
TCTTTCTTTCCCTCCCGCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTC
CTTCTTTCCCTCCCGCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCT
TCTTTCCCTCCCTCTTTCTTTCCCTCCCGCCTTCTTTCCCTCCCTCCTTC
TTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTTTTTCCCTCCCTCCTTCTT
TCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTTTTTC
CCTCCCTCCTTCTTTCCCTCCCTCCTTTTTTCCCTCCCTCCTTCTTTCCC
TCCCTCCTTCGTTCCCTCCCGCCTTCTTTCCCTCCCTCCTTCTTTCCCTC
CCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCGCCTTCTTTCCCTCCC
TCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTCCTTCTTTCCCTCCCGC
CTTCTTTCCCTCCCTCCTTCTTTCCCTCCCTTCCTCCCTCCTGGGCTTCG
GCTTACCGTTCAGTAGATCTGTATCTTGATATCCGCTTCTCACCTCCCTC
ATTCCCTCATTCCCTCTTCTTCTTACGTGAAGCCTTTCAGGCTCATCTGT
TTTCACTGCAAGCTCCCTACCCCATCCGTGCCCCGCTTTCTCCTCCTCTT
CTTCCTCCTCCTCCTCCTTCACACGTCCTCCACCTTCCATCTTTCCTCTC
CCAACGGGCCCAATTACTGACGTGTCCAATAGGCAGAATTGTAACAGCTC
CAGCGACAGCAGCACCAGCAGTAACAGCACCAGCAGTAACAGCACAAGCA
GAGTCATCATCCACAGGGCTGGCACGGAGAACCCCACTTGCCCGAGGAGG
AGGAAGGGCAAAGATGGCTGCACCAGCAGCTGCAGCAGCGGCACTGCCGG
ACAAGGAGGGATGAAGGAAGGGAACGTGGGATCTATCTCCTCCTTTCTCT
CTGATGCCATCGCGCTGCTTCCTTCCTCCTCAACCCCGTCCTCCTCCTCT
TCCTCGCCGGAAGTAGGGGCGACCCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCCAAGTGA back to top Coding sequence (CDS) from alignment at chr24:109109..113801-
>NO24G00320.2 ID=NO24G00320.2|Name=NO24G00320.2|organism=Nannochloropsis oceanica|type=CDS|length=1842bp|location=Sequence derived from alignment at chr24:109109..113801- (Nannochloropsis oceanica) back to top