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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr24 | genome | chr24:94748..99215 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO24G00290.1 vs.
Match: XP_006820129.1 (PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic-like [Saccoglossus kowalevskii]) HSP 1 Score: 496.9 bits (1278), Expect = 8.100e-137 Identity = 263/555 (47.39%), Postives = 350/555 (63.06%), Query Frame = 0
Query: 13 LLLPATVSGFPKKPRIIDPKNPLDPLPSP------------------RAKRGESPGYEVTILEASDVVGGRLHSRRETVLEDGTSFQIEHGFHGWFEQYFQFKNIRDRLDINGNFRPWGAVHYIFKDYLPEEIESVGPYPLNLLSVIAKSPNMDLAMATKSTLALPDLMFFDYDTVWEKYDNITFREWATLKNVDEAFYDIVLQPALSVTVNERSTLSAAEMLTYMQIYFLASPDADKREVTTADYYTAVLEPWVKHLLNYKVSIKLNSPVRGLLF-TKEGKVIVDLVHAEEEEEGGPYDYVVMAADLSATQAILSQSVVEEDPAEAEEGREGEAHVEVGKEHAFRAALRQYQQSSLDLVTERVGQLPIAPEYKVFRAYFNQQLQGPNGTVDILETPDFAPVNLVVQYHLLEDESARWARQTGGSVIEFHLYTWAFGNTPDDKVWELIRPTICDFIYPQICSSGFKMLGYHVNSYHNFPSFQTGLYGLRPSADYGMAHGLPNMAFAGDWLQTSYPSALMERAVSTGREAANLILFQDHVRQAPMKVLSNKGPGIL 549
+L+ + G P+ PR+I+P NP DP P A GY+VTI EASDV+GGRL ++ VL +F +EHGFHGWF Y+QFK+IR RLDI+ NF+PWG VH IF+D+ PE + S GPYPLNLL+++ +S N++ A + LA+PDL +F+YD V+E++DNI+ EWA + +V+ FYDI++QP+LSVT+NER TLSAAEML YMQIYFL +P AD REVTT D++T +LEPWVK L ++ V I+LNS V G +F K G +I A+++ YDY V+A D + I+ S A R +++ + L IAP YKV R +F++Q+ PN DIL+ P+ P+NL+ QYHLLE ESA WA +TGGS++EFHLYTW +G D +VW +I PT + I+P+I FK+L +V SY NFPSFQ G RP + + + G+ N+ AGDWL+TSYPSALMERAVSTGREAAN IL DHV+Q P+ V S+ GPGIL
Sbjct: 16 ILVAVIIFGSPRSPRVIEPVNPDDPDKLPDGIKRTVLVAGGGLAGLSTALELAERGYDVTIREASDVIGGRLFAKPVEVLN--RTFYLEHGFHGWFYNYYQFKDIRKRLDIDHNFKPWGPVHMIFRDHKPEILYSEGPYPLNLLAIVYRSLNINFWQALTTVLAIPDLFWFNYDEVYERHDNISLAEWAQIYHVNTNFYDIIMQPSLSVTMNERETLSAAEMLMYMQIYFLNNPKADYREVTTVDHFTGILEPWVKKLKSFGVIIELNSTVEGFVFDNKTGNII----SADDKN----YDYFVLATDFGGVRDIMKSS-------------------------ANRYVNNALVHNNIQRFMGGIDGLAIAPPYKVIRIWFDKQI--PNAP-DILQCPEHYPINLIAQYHLLERESAIWANKTGGSIMEFHLYTWKYGPVSDSEVWGIISPTAME-IFPEIIEKNFKILAVNVFSYENFPSFQAGSNRHRPMSHFAKSCGISNLMLAGDWLRTSYPSALMERAVSTGREAANHILLSDHVKQVPLLVASSLGPGIL 531
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO24G00290.1 ID=NO24G00290.1|Name=NO24G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp
ATGCTACATCGCCACCGTTTTCTCCTCCTCCTGCCGCTGCTGCTGCCAGC
AACGGTTTCGGGCTTTCCCAAGAAGCCCCGCATTATCGACCCCAAGAATC
CCCTTGACCCCCTACCCTCCCCGAGGGCGAAACGCGGCGAGTCGCCGGGT
TACGAGGTGACGATCTTGGAGGCGTCGGACGTGGTAGGGGGGCGACTGCA
TTCCCGCCGTGAAACAGTGTTGGAAGATGGAACCTCTTTTCAGATCGAGC
ACGGCTTTCACGGTTGGTTTGAACAGTACTTCCAGTTTAAAAATATCAGG
GACCGCCTGGACATCAACGGCAATTTTCGGCCATGGGGCGCAGTGCACTA
CATCTTCAAGGACTACCTCCCGGAGGAGATCGAGTCCGTCGGTCCTTATC
CCTTGAACCTCCTCTCAGTCATCGCCAAGAGCCCCAACATGGACCTCGCG
ATGGCCACCAAATCCACTCTGGCCCTTCCCGACCTCATGTTCTTCGATTA
CGACACGGTGTGGGAAAAGTACGACAACATCACCTTTCGGGAATGGGCCA
CGTTAAAAAACGTCGACGAGGCCTTCTACGACATTGTCTTGCAGCCCGCC
CTCTCCGTCACTGTGAACGAGCGGTCCACCCTCTCCGCGGCAGAGATGCT
GACCTACATGCAGATCTACTTCCTGGCCTCCCCCGACGCCGACAAACGCG
AAGTGACCACCGCGGACTACTACACCGCTGTCCTCGAGCCCTGGGTTAAG
CATCTCCTCAATTACAAAGTGAGCATCAAATTGAACTCGCCCGTGCGGGG
CTTGCTCTTCACGAAGGAAGGGAAAGTTATCGTCGACCTGGTACATGCTG
AGGAAGAAGAGGAGGGGGGCCCATATGACTATGTCGTGATGGCTGCTGAC
CTGTCAGCGACGCAGGCCATCCTTTCCCAATCCGTAGTCGAAGAAGACCC
GGCCGAGGCCGAGGAAGGGAGGGAGGGCGAGGCGCACGTCGAGGTAGGGA
AGGAGCACGCCTTCCGAGCCGCCCTCCGTCAGTACCAGCAGAGCTCCCTC
GACCTCGTCACTGAACGTGTGGGTCAGCTCCCTATTGCCCCTGAATACAA
GGTTTTCCGCGCCTACTTCAACCAGCAGTTGCAGGGTCCCAACGGCACAG
TTGACATTCTAGAGACGCCAGACTTCGCACCTGTCAACTTAGTAGTGCAG
TACCACCTCCTGGAAGACGAGTCCGCCCGATGGGCCCGCCAGACGGGAGG
CTCCGTGATCGAGTTCCACCTCTACACGTGGGCCTTTGGAAACACGCCCG
ACGACAAGGTTTGGGAGCTCATCCGTCCCACGATCTGTGATTTCATTTAC
CCCCAAATCTGCTCTTCTGGTTTTAAGATGCTGGGCTACCACGTGAACTC
CTACCACAATTTTCCCTCCTTCCAAACGGGTCTTTACGGTCTACGCCCCT
CCGCGGATTACGGCATGGCCCATGGGCTTCCTAATATGGCTTTCGCGGGC
GACTGGCTCCAGACTTCCTATCCCTCTGCCCTGATGGAACGCGCAGTCTC
TACTGGCCGGGAAGCAGCCAATCTGATTCTTTTTCAAGACCATGTACGTC
AGGCCCCTATGAAAGTCCTCTCCAACAAGGGGCCGGGCATCCTCTAA back to topprotein sequence of NO24G00290.1 >NO24G00290.1-protein ID=NO24G00290.1-protein|Name=NO24G00290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MLHRHRFLLLLPLLLPATVSGFPKKPRIIDPKNPLDPLPSPRAKRGESPG
YEVTILEASDVVGGRLHSRRETVLEDGTSFQIEHGFHGWFEQYFQFKNIR
DRLDINGNFRPWGAVHYIFKDYLPEEIESVGPYPLNLLSVIAKSPNMDLA
MATKSTLALPDLMFFDYDTVWEKYDNITFREWATLKNVDEAFYDIVLQPA
LSVTVNERSTLSAAEMLTYMQIYFLASPDADKREVTTADYYTAVLEPWVK
HLLNYKVSIKLNSPVRGLLFTKEGKVIVDLVHAEEEEEGGPYDYVVMAAD
LSATQAILSQSVVEEDPAEAEEGREGEAHVEVGKEHAFRAALRQYQQSSL
DLVTERVGQLPIAPEYKVFRAYFNQQLQGPNGTVDILETPDFAPVNLVVQ
YHLLEDESARWARQTGGSVIEFHLYTWAFGNTPDDKVWELIRPTICDFIY
PQICSSGFKMLGYHVNSYHNFPSFQTGLYGLRPSADYGMAHGLPNMAFAG
DWLQTSYPSALMERAVSTGREAANLILFQDHVRQAPMKVLSNKGPGIL* back to topmRNA from alignment at chr24:94748..99215+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO24G00290.1 ID=NO24G00290.1|Name=NO24G00290.1|organism=Nannochloropsis oceanica|type=mRNA|length=4468bp|location=Sequence derived from alignment at chr24:94748..99215+ (Nannochloropsis oceanica)
ATGCTACATCGCCACCGTTTTCTCCTCCTCCTGCCGCTGCTGCTGCCAGC
AACGGTTTCGGGCTTTCCCAAGAAGCCCCGCATTATCGACCCCAAGTGAG
TTCTTAGGGAAGAGAGGATGAAGAGGGAGAGGGAGAGACGGAAGGGCAGC
TGTCTTGGAAGGAGGAGATTAAGGAAAATAAGAAGAGAGCAGCACCTTTC
ACGTGCCAGTCCTGACGCATGTGTGAACGGCCTCCCATCCATGCCTCCCT
TCCTCCTTCCCTCCCTCCCCTCTCCTTTCAAACAGGAATCCCCTTGACCC
CCTACCCTCCCCGAGGGCGAAACGCGGCGAGTCGCCGTAGTGGGAGGGGG
CTTGGCAGGTCTCTCCGCCTCTCTTGAGTTGGCCGAGAGGGGTTACGAGG
TGAGAACTGACTCAGGAGGAGGATTCGGGAGGGTCTTGCCTTGTTTTGTT
TGACTTGATAAAGGTTAATTTATATGAACCAGAGATTTCACGAAACGAGA
GCATAAGACCCGTTATACATCGAAAGAGCATTAAAAAAAGAAACCCACAA
CGAACGCTGCGTCTTCATCCTCCCTCCTCATCACCCACGCACGCCGCGAC
CGACAGGTGACGATCTTGGAGGCGTCGGACGTGGTAGGGGGGCGACTGCA
TTCCCGCCGTGAAACAGTGTTGGAAGATGGAACCTCTTTTCAGATCGAGC
ACGGCTTTCACGGTTGGTTTGAACAGTACTTCCAGGTATGCCCTCGCCCT
CCTTCCCTCAATTCCTCCCTCCGGCCCTCCCTTCCTCTTTCTCCTTCCCT
CTTTCTCCCTTCCTCCTTCCATCACGCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCTCTCCAGTTTAAAAATATCAGGGACCGCCTGGACATCAACG
GCAATTTTCGGCCATGGGGCGCAGTGCACTACATCTTCAAGGTGAGGGGG
AGGGGGGGAGGGAGGGAAAGAGGGATTAAGGACTGCATAACCTCGTGTAT
ACCAGTCGAACCTTGACGCACTTATCCCTCCCTCCATCCCTCCTTTCCCA
GGACTACCTCCCGGAGGAGATCGAGTCCGTCGGTCCTTATCCCTTGAACC
TCCTCTCAGTCATCGCCAAGAGCCCCAACATGGACGTACGTCCCTCCCTC
CCTCCCTCCCTCCCTCACTCACTCCCTCCTCGCTTCCTCCGCTGGGCTGT
CTCGCTCGTCTCCTTTTCTTCTTTTCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTTTCCTCCCTTCTCGCCTGTTTTCAACTCGTGCTTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCTCTTCCCCCCTCCCTCGCAGCTCGCGATGGCC
ACCAAATCCACTCTGGCCCTTCCCGACCTCATGTTCTTCGATTACGACAC
GGTAACGCCCGCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCAACTT
CAAGACCATCCACACCCACCACCTCCCCCCTCCCTCCCTCCCTCCCTGCC
TCAGGTGTGGGAAAAGTACGACAACATCACCTTTCGGGAATGGGCCACGT
TAAAAAACGTCGACGAGGCCTTCTACGACATTGTCTTGCAGGTGCCTCCC
TCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCTTTTCCTCCTCCTTCCCCG
AGAGCTCACGTGCTTTCCCTCCCTCCTTCCCTCTCTCCTTCCTTCCCTCC
CTCCCTCCCTCCAGCCCGCCCTCTCCGTCACTGTGAACGAGCGGTCCACC
CTCTCCGCGGCAGAGATGCTGACCTACATGCAGATCTACTTCCTGGCCTC
CCCCGACGCCGACAAACGCGAAGTACGCCTGCCCTCCCTCCCTCCCTCCT
CCCCTCCCTCCCTCCCCATCTTGGTCATTGTCTACTCATCTTCCCCTCCC
TCCCTCCCTCTCTCCTCAGGTGACCACCGCGGACTACTACACCGCTGTCC
TCGAGCCCTGGGTTAAGCATCTCCTCAATTACAAAGTGGTAATGCCGCCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCATCCTCCTCCCTC
CTCCTCCTCTCTCCCTCCTCACCCTCCTTCCTCCTTCCCCTCCTCCAGCT
CACTAATCCTCCCTCCCTCCCTCCCTCCGTAGAGCATCAAATTGAACTCG
CCCGTGCGGGGCTTGCTCTTCACGAAGGAAGGGAAAGTTATCGTCGACCT
GGTACATGCTGGTAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGTACCGAGTCTCTCGGAAAGATACTAAA
ACACACATTTATACATATATGAAATTTCATTCGTATACATACACACATAC
ATACACACATACATACACACATACATATCTATACGCATGTATATCAACAC
ACCTACACATGCACACTACACGTACAGAGGAAGAAGAGGAGGGGGGCCCA
TATGACTATGTCGTGATGGCTGCTGACCTGTCAGCGACGCAGGTGAGTGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGTAGGCTCGATATT
ACCTTGTGTACCATAACATAAATCCGACAGCTCACATCATATCCTCAGTC
CACCAAATAATATTACCACTTCGGTATTGCCATATAAATCCGACGCTACA
CCACCTCACACCATATCATACCTACCGACCATCATCCACTTACATTTTTC
AAATCCATATTGACATAGAAATCCGACGCTATACCACCTCACATCCTACC
CACAGGCCATCCTTTCCCAATCCGTAGTCGAAGAAGACCCGGCCGAGGCC
GAGGAAGGGAGGGAGGGCGAGGCGCACGTCGAGGTAGGGAAGGAGCACGC
CTTCCGAGCCGCCCTCCGTCAGTACCAGCAGAGCTCCCTCGACCTCGTCA
CTGAACGTGTGGGTCAGCTCCCTATTGCCCCTGAATACAAGGTATTCCCC
TTCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTCTCGCCCTTTCCC
TCGTCGGTCCTTGTCACTCGCCCATTTTCCTGCCCTCCCTCCCTTCTTCC
CTCAGGTTTTCCGCGCCTACTTCAACCAGCAGTTGCAGGGTCCCAACGGC
ACAGTTGACATTCTAGAGACGCCAGGTGAGGAGGGAGGGAGGGAGGGAGG
AGGGAGGGAGGGAGGAAGTTACGCCCTTTCTGGATACCCCCGTCATATCT
CACCTGCCCTCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCCCAAGACTTC
GCACCTGTCAACTTAGTAGTGCAGTACCACCTCCTGGAAGACGAGTCCGC
CCGATGGGCCCGCCAGACGGGAGGTACGCCTTCTCCCTCCCTCCTCCTCC
CTCCTTTCTTTTACCCTGATTTCCCCCTGCGAGTAGTCTCGCTTTTCCAA
GCCTAACCTCTCTCCCTCCCTCCCTCCCTCCTCCAGGCTCCGTGATCGAG
TTCCACCTCTACACGTGGGCCTTTGGAAACACGCCCGACGACAAGGTGAG
GAGGGAGGGAGGGAAGGGTGCCAATAGCAGACGCTGCTGTAATGTTAGGT
AAATACACCCAGCCCACCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCACAGGTTTGGGAGCTCATCCGTCCCACGATCTGTGATTTCATT
TACCCCCAAATCTGCTCTTCTGGTTTTAAGATGCTGGGTACGTCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCGTCCACCATTA
TCTATTTACCTCGTTTTCCCGCCCTCCTATCCCGCCTCCCTTCCTCCCGT
CCATCCCTACATCCACCTCCACCGCACTCCCTCTATCCCTCCCCCCCTCC
CTCGCAGGCTACCACGTGAACTCCTACCACAATTTTCCCTCCTTCCAAAC
GGGTCTTTACGGTCTACGCCCCTCCGCGGATTACGGCATGGCCCATGGGG
TAAGGCAACACCCTCCCTCGACCTGACCATCCCTCCCTCCCTCCCTCCCC
CCTTCCCCCTCCCAATTCTCCTCCTTCCATCCATCCATTATTTCTTCCCT
CCTGGTTCCTTAAAGCATCGGTATCATATGTGGAACCCACCCTCCAACCC
ACCCCTCGCCTCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCAGCTTCCTAATATGGCTTTCGCGGGCGACTGGCTCCAGACTTCCTAT
CCCTCTGCCCTGATGGAACGCGCAGTCTCTACTGGTACGCCCCTTCCTTC
CTTCCCTCCCTCCCTTCCTCCTTCCCTCTTTATTTGCTTCTTCCCCCCTT
TCCCCTCCTCCGTCCCCCCCTCCCAAGCCCTTCAGAAAATCACGAGCTCT
CCCTCCCTCCCTCCCTCCCTCCCTAGGCCGGGAAGCAGCCAATCTGATTC
TTTTTCAAGACCATGTACGTCAGGCCCCTATGAAAGTCCTCTCCAACAAG
GGGCCGGGCATCCTCTAA back to topCoding sequence (CDS) from alignment at chr24:94748..99215+ >NO24G00290.1 ID=NO24G00290.1|Name=NO24G00290.1|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr24:94748..99215+ (Nannochloropsis oceanica)
ATGCTACATCGCCACCGTTTTCTCCTCCTCCTGCCGCTGCTGCTGCCAGC
AACGGTTTCGGGCTTTCCCAAGAAGCCCCGCATTATCGACCCCAAGAATC
CCCTTGACCCCCTACCCTCCCCGAGGGCGAAACGCGGCGAGTCGCCGGGT
TACGAGGTGACGATCTTGGAGGCGTCGGACGTGGTAGGGGGGCGACTGCA
TTCCCGCCGTGAAACAGTGTTGGAAGATGGAACCTCTTTTCAGATCGAGC
ACGGCTTTCACGGTTGGTTTGAACAGTACTTCCAGTTTAAAAATATCAGG
GACCGCCTGGACATCAACGGCAATTTTCGGCCATGGGGCGCAGTGCACTA
CATCTTCAAGGACTACCTCCCGGAGGAGATCGAGTCCGTCGGTCCTTATC
CCTTGAACCTCCTCTCAGTCATCGCCAAGAGCCCCAACATGGACCTCGCG
ATGGCCACCAAATCCACTCTGGCCCTTCCCGACCTCATGTTCTTCGATTA
CGACACGGTGTGGGAAAAGTACGACAACATCACCTTTCGGGAATGGGCCA
CGTTAAAAAACGTCGACGAGGCCTTCTACGACATTGTCTTGCAGCCCGCC
CTCTCCGTCACTGTGAACGAGCGGTCCACCCTCTCCGCGGCAGAGATGCT
GACCTACATGCAGATCTACTTCCTGGCCTCCCCCGACGCCGACAAACGCG
AAGTGACCACCGCGGACTACTACACCGCTGTCCTCGAGCCCTGGGTTAAG
CATCTCCTCAATTACAAAGTGAGCATCAAATTGAACTCGCCCGTGCGGGG
CTTGCTCTTCACGAAGGAAGGGAAAGTTATCGTCGACCTGGTACATGCTG
AGGAAGAAGAGGAGGGGGGCCCATATGACTATGTCGTGATGGCTGCTGAC
CTGTCAGCGACGCAGGCCATCCTTTCCCAATCCGTAGTCGAAGAAGACCC
GGCCGAGGCCGAGGAAGGGAGGGAGGGCGAGGCGCACGTCGAGGTAGGGA
AGGAGCACGCCTTCCGAGCCGCCCTCCGTCAGTACCAGCAGAGCTCCCTC
GACCTCGTCACTGAACGTGTGGGTCAGCTCCCTATTGCCCCTGAATACAA
GGTTTTCCGCGCCTACTTCAACCAGCAGTTGCAGGGTCCCAACGGCACAG
TTGACATTCTAGAGACGCCAGACTTCGCACCTGTCAACTTAGTAGTGCAG
TACCACCTCCTGGAAGACGAGTCCGCCCGATGGGCCCGCCAGACGGGAGG
CTCCGTGATCGAGTTCCACCTCTACACGTGGGCCTTTGGAAACACGCCCG
ACGACAAGGTTTGGGAGCTCATCCGTCCCACGATCTGTGATTTCATTTAC
CCCCAAATCTGCTCTTCTGGTTTTAAGATGCTGGGCTACCACGTGAACTC
CTACCACAATTTTCCCTCCTTCCAAACGGGTCTTTACGGTCTACGCCCCT
CCGCGGATTACGGCATGGCCCATGGGCTTCCTAATATGGCTTTCGCGGGC
GACTGGCTCCAGACTTCCTATCCCTCTGCCCTGATGGAACGCGCAGTCTC
TACTGGCCGGGAAGCAGCCAATCTGATTCTTTTTCAAGACCATGTACGTC
AGGCCCCTATGAAAGTCCTCTCCAACAAGGGGCCGGGCATCCTCTAA back to top
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