NO24G00190.1, NO24G00190.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G00190.1
Unique Name	NO24G00190.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1509
Alignment location	chr24:58688..61037 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:58688..61037 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO24G00190.1 vs.
Match: OAE31443.1 (hypothetical protein AXG93_725s1330 [Marchantia polymorpha subsp. ruderalis]; AQM55167.1 sodium/phosphate symporter PTB4 [Marchantia polymorpha]; PTQ38022.1 hypothetical protein MARPO_0054s0123 [Marchantia polymorpha])

HSP 1 Score: 440.7 bits (1132), Expect = 6.300e-120
Identity = 252/519 (48.55%), Postives = 335/519 (64.55%), Query Frame = 0

Query:    1 MLGQFTWIVVYGALGAFGFGWGTGANDVGNAFGTSVGAKTLTMMQACIIAAIFEFGGAMLLGRVSTQTIAGEIANAQDFMDNPIIYAYGMATTLFVGTIWLAVASYYGWNVSSTHSIIGGIIGFAWTFKGISGVNWMTHDPTFWPPYRGIVPIVVSWFLAPAMTALAAALIFGAKKTLRDIDPKWSDSTAAWV--AFVIAVGLALLTWAAVPWMRRKI---EEKEAAKCRELAA------------------RSVESKRITSGMGKGGKKEGTERPLSHPEEEDEDGGEIEGGREGGEEGREIKTEKEIGKKDWMGMAKRAMLHGVTVDIHEIIQTDETVGRIHGSAEVFDVKAEAIFAYLQVFSAICVMFAHGAAEVGYMSGPLSSIYDIYQNDVVNRKLVAPVWITFISAFSLVVGLATYGYNITRAMGTQMACLTPSRGFAAELATAFVILVCSQWGLPNSSSQCIVGGIVGVGCLEGQSGVNWRFFGITFASWTMTLVIMGGGTALLFAQGVYAP 497
            +L ++ W+VV GA+ AFGFGWGTGANDV NAFGTSVG+KTLT+ QA IIA+IFEF GA+LLGRVST TIA  IA+ + F  +P +YAYGM   L +GT+WL + SY+G+NVSSTHSIIGGIIGFA  + G + V W   D   +PPY+G+V IV+SWF++P ++ L AALIF   ++L  +  K + S A W    FV+      L +      ++ +   +E   AK   ++A                  R + +++  S   +  K   TE        + E  G+         E R++         +W   +K A  HG+ VDIH +++TDE +G +H +AE F+ + E  F+YLQVFSAICV+FAHGA EVGYM+GPL++I+D+YQ   +++ +  PVWI  I A  LV+GLATYGYN+TR+MG ++A LTP+RGFAAELATAFVI++ SQ+GLP SSSQCI G I+GVG LEG  GVNW FF   FASW  TL ++G   A LFAQGVYAP
Sbjct:    3 VLDEYLWLVVVGAIVAFGFGWGTGANDVANAFGTSVGSKTLTLRQAVIIASIFEFAGALLLGRVSTNTIASGIADIESFNRDPEVYAYGMVCALGIGTVWLIITSYWGFNVSSTHSIIGGIIGFALVWDGPNAVVWARKDSGSFPPYKGVVAIVLSWFVSPILSGLTAALIFFVVRSL-VLRQKNAYSLAFWTLPPFVLITTFINLYFVFTKGAKKALSSNDEWTDAKAAWVSACIAAGITLLTIFVALPLLRKMANRQFDSDGNRIVKPVNTELQNVSATGDLEQSGD-------NTEPRKL--------SNWQKFSK-AATHGMDVDIHSVVKTDEKIGDMHEAAEKFEERVEYAFSYLQVFSAICVIFAHGAGEVGYMAGPLATIWDVYQKGQLSKSVTPPVWIVLIGAIGLVIGLATYGYNVTRSMGVKLAKLTPTRGFAAELATAFVIMIASQYGLPTSSSQCITGAIIGVGLLEGSKGVNWTFFLKQFASWVSTLFVIGLFVAALFAQGVYAP 504

The following BLAST results are available for this feature:

BLAST of NO24G00190.1 vs.

BLAST of NO24G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
OAE31443.1	6.300e-120	48.55	hypothetical protein AXG93_725s1330 [Marchantia po...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO24G00190	NO24G00190	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO24G00190.1	NO24G00190.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO24G00190.1.cds1	NO24G00190.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00190.1.cds2	NO24G00190.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00190.1.cds3	NO24G00190.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00190.1.cds4	NO24G00190.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00190.1.cds5	NO24G00190.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00190.1.cds6	NO24G00190.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO24G00190.1.cds7	NO24G00190.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr24:58688..61037-
coding sequence from alignment at chr24:58688..61037-

mRNA sequence

>NO24G00190.1 ID=NO24G00190.1|Name=NO24G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1509bp
ATGCTCGGACAATTTACTTGGATTGTCGTATACGGGGCGCTGGGTGCATT
TGGCTTTGGCTGGGGGACGGGGGCCAACGATGTAGGCAATGCATTTGGAA
CTTCGGTGGGAGCGAAGACTTTGACCATGATGCAGGCCTGCATCATTGCT
GCTATCTTCGAGTTTGGAGGGGCCATGCTTCTGGGTCGAGTGTCCACACA
GACGATCGCGGGTGAAATTGCCAATGCTCAAGATTTCATGGATAACCCGA
TCATTTATGCGTATGGCATGGCCACCACTCTTTTTGTTGGCACCATCTGG
CTGGCCGTAGCGAGCTATTATGGCTGGAACGTCTCTTCGACACATTCCAT
CATCGGAGGCATCATCGGCTTCGCCTGGACTTTCAAAGGCATCAGCGGCG
TCAACTGGATGACACACGACCCGACGTTCTGGCCACCCTACCGAGGAATA
GTTCCCATCGTCGTCTCCTGGTTCCTTGCCCCTGCCATGACTGCCCTCGC
CGCCGCCCTAATCTTCGGTGCCAAGAAGACACTGCGGGATATCGATCCCA
AGTGGAGCGATTCGACCGCGGCGTGGGTCGCTTTCGTGATTGCCGTGGGC
TTGGCACTGTTGACATGGGCGGCTGTGCCGTGGATGAGGAGGAAGATCGA
GGAAAAAGAAGCTGCAAAGTGCAGGGAGCTTGCGGCGAGATCGGTGGAGT
CGAAAAGGATTACCTCGGGGATGGGGAAAGGAGGAAAGAAGGAAGGGACA
GAGAGACCGTTGTCTCATCCTGAGGAAGAGGACGAAGACGGAGGGGAAAT
CGAGGGAGGGAGGGAAGGAGGAGAGGAGGGCAGGGAGATTAAAACAGAAA
AGGAAATTGGGAAAAAGGATTGGATGGGAATGGCGAAGCGAGCTATGTTG
CACGGGGTAACCGTGGATATCCATGAGATCATTCAAACGGACGAGACCGT
TGGGAGGATTCACGGGAGTGCCGAAGTGTTTGATGTGAAGGCAGAGGCGA
TTTTTGCGTACTTGCAGGTATTCAGTGCCATTTGTGTGATGTTTGCGCAT
GGCGCCGCAGAGGTCGGCTATATGAGTGGACCCCTGTCGAGTATTTACGA
CATTTACCAGAATGATGTGGTAAACAGGAAGTTGGTAGCGCCCGTGTGGA
TCACGTTTATCTCGGCGTTCTCCCTGGTTGTCGGTTTGGCAACCTATGGC
TACAATATCACCCGAGCTATGGGCACGCAAATGGCATGCCTCACGCCATC
CCGTGGTTTCGCTGCTGAGCTGGCGACGGCATTCGTCATCCTTGTCTGTT
CGCAGTGGGGTCTCCCGAATTCTTCTTCGCAGTGCATTGTCGGCGGCATC
GTTGGAGTGGGCTGTCTGGAGGGTCAGTCAGGTGTGAACTGGAGGTTCTT
CGGTATCACATTTGCGAGCTGGACAATGACACTGGTGATTATGGGAGGAG
GGACTGCACTGCTATTCGCCCAGGGTGTGTACGCACCTTGTCCAACTGAG
AGAGTGTGA

protein sequence of NO24G00190.1

>NO24G00190.1-protein ID=NO24G00190.1-protein|Name=NO24G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=503bp
MLGQFTWIVVYGALGAFGFGWGTGANDVGNAFGTSVGAKTLTMMQACIIA
AIFEFGGAMLLGRVSTQTIAGEIANAQDFMDNPIIYAYGMATTLFVGTIW
LAVASYYGWNVSSTHSIIGGIIGFAWTFKGISGVNWMTHDPTFWPPYRGI
VPIVVSWFLAPAMTALAAALIFGAKKTLRDIDPKWSDSTAAWVAFVIAVG
LALLTWAAVPWMRRKIEEKEAAKCRELAARSVESKRITSGMGKGGKKEGT
ERPLSHPEEEDEDGGEIEGGREGGEEGREIKTEKEIGKKDWMGMAKRAML
HGVTVDIHEIIQTDETVGRIHGSAEVFDVKAEAIFAYLQVFSAICVMFAH
GAAEVGYMSGPLSSIYDIYQNDVVNRKLVAPVWITFISAFSLVVGLATYG
YNITRAMGTQMACLTPSRGFAAELATAFVILVCSQWGLPNSSSQCIVGGI
VGVGCLEGQSGVNWRFFGITFASWTMTLVIMGGGTALLFAQGVYAPCPTE
RV*

mRNA from alignment at chr24:58688..61037-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO24G00190.1 ID=NO24G00190.1|Name=NO24G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2350bp|location=Sequence derived from alignment at chr24:58688..61037- (Nannochloropsis oceanica)
ATGCTCGGACAATTTACTTGGATTGTCGTATACGGGGCGCTGGGTGCATT
TGGCTTTGGCTGGGGGACGGGGGCCAACGATGTAGGCAATGCATTTGGAA
CTTCGGTGGGAGCGAAGACTTTGACCATGATGCAGGCCTGCATCATTGCT
GCTATCTTCGAGTTTGGAGGGGCCATGCTTCTGGGTCGAGTGTCCACACA
GACGATCGCGGGTGAAATTGCCAATGCTCAAGATTTCATGGATAACCCGA
TCATTTATGGTACGAGGGAGAGGAAGGAAGGGAGGGAGGGAAGGAGGAAG
GGGAAGGCGAGGGCATCCATTGATACTCATCTGATTTCATCTCGCATGCC
CTTTATGTCTATTTGTTTCCCTTCTTACTTTTATTCTCAACGAAAACATC
TATGTTTTATGTGTCTCTGTTGGTATTAATTGCTTAATATGCACCATTTA
TCTACAACTTACAGCGTATGGCATGGCCACCACTCTTTTTGTTGGCACCA
TCTGGCTGGCCGTAGCGAGCTATTATGGCTGGAACGTCTCTTCGACACAT
TCCATCATCGGAGGCATCATCGGCTTCGGTGCGTGACAGTATATGGGAGA
GAATTGGAGGTATGAAGCCTGACTATACTTATGCTCACGCGCATATGCAT
ACCTCCTCCCTCCCAACCTTAGCCTGGACTTTCAAAGGCATCAGCGGCGT
CAACTGGATGACACACGACCCGACGGTAAGATCCTTCACGCCTCTTTACC
CGTATTTCCCTTGCTGTCTTTTTTCCCTCCTTCCAATCTAAAGCACATGG
AACAAAAACAAACAACAAACGAAAAACAAACATCAAACAACAAACAAACA
ATTTTAATGCCATGCAGTTCTGGCCACCCTACCGAGGAATAGTTCCCATC
GTCGTCTCCTGGTTCCTTGCCCCTGCCATGACTGCCCTCGCCGCCGCCCT
AATCTTCGGTAGCTGTCGGTTCCTCGTCCTTCGTCATCCCAGTGCCCAAC
AGCGCGCTATCTATGTCGCTCCCCCCTTGTCCTCATCACGGCCTATATCA
ACATCTACTTTGTCCTGACGAAAGGTGCCAAGAAGACACTGCGGGATATC
GATCCCAAGTGGAGCGATTCGACCGCGGCGTGGGTCGCTTTCGTGATTGC
CGTGGGCTTGGCACTGTTGACATGGGCGGCTGTGCCGTGGATGAGGAGGA
AGATCGAGGAAAAAGAAGCTGCAAAGTGCAGGGAGCTTGCGGCGAGATCG
GTGGAGTCGAAAAGGATTACCTCGGGGATGGGGAAAGGAGGAAAGAAGGA
AGGGACAGAGAGACCGTTGTCTCATCCTGAGGAAGAGGACGAAGACGGAG
GGGAAATCGAGGGAGGGAGGGAAGGAGGAGAGGAGGGCAGGGAGATTAAA
ACAGAAAAGGAAATTGGGAAAAAGGATTGGATGGGAATGGCGAAGCGAGC
TATGTTGCACGGGGTAACCGTGGATATCCATGAGATCATTCAAACGGACG
AGACCGTTGGGAGGATTCACGGGAGTGCCGAAGTGTTTGATGTGAAGGCA
GAGGCGATTTTTGCGTACTTGCAGGTATTCAGTGCCATTTGTGTGATGTT
TGCGCATGGCGCCGCAGAGGTCGGCTATATGAGTGGACCCCTGTCGAGTA
TTTACGACATTTACCAGAATGATGTGGTAAACAGGAAGTTGGTAGCGCCC
GTGTGGATCACGTTTATCTCGGCGTTCTCCCTGGTTGTCGGTACGTGGTT
GGGAAAGGGAGGGGAAGGAGACAAGGGGATGTGAATGGTTGAGTTCTTGC
TATTGATTTCAGCTTAAACTACATATATCAGTACAGTTTCTCATGAAACA
TACTAACTCTCCCTCCGTGTCTCCATCCGTGTCTCAGGTTTGGCAACCTA
TGGCTACAATATCACCCGAGCTATGGGCACGCAAATGGCATGCCTCACGC
CATCCCGTGGTTTCGCTGCTGAGCTGGCGACGGCATTCGTCATCCTTGTC
TGTTCGCAGTGGGGTCTCCCGAATTCTTCTTCGCAGGTACGCCTCCCTTT
GTCCTCTTTTTCCTGGCTCTTTTTTTTACCTTTATGTATGTTCTTTGTGT
CGAAGTGTGCGAGCAAAGTTTGACCTTGTCACCTCATCTAAGACCTTCTT
CCTTTCCCCCCTCTCTCTCATAGTGCATTGTCGGCGGCATCGTTGGAGTG
GGCTGTCTGGAGGGTCAGTCAGGTGTGAACTGGAGGTTCTTCGGTATCAC
ATTTGCGAGCTGGACAATGACACTGGTGATTATGGGAGGAGGGACTGCAC
TGCTATTCGCCCAGGGTGTGTACGCACCTTGTCCAACTGAGAGAGTGTGA

Coding sequence (CDS) from alignment at chr24:58688..61037-

>NO24G00190.1 ID=NO24G00190.1|Name=NO24G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1509bp|location=Sequence derived from alignment at chr24:58688..61037- (Nannochloropsis oceanica)
ATGCTCGGACAATTTACTTGGATTGTCGTATACGGGGCGCTGGGTGCATT
TGGCTTTGGCTGGGGGACGGGGGCCAACGATGTAGGCAATGCATTTGGAA
CTTCGGTGGGAGCGAAGACTTTGACCATGATGCAGGCCTGCATCATTGCT
GCTATCTTCGAGTTTGGAGGGGCCATGCTTCTGGGTCGAGTGTCCACACA
GACGATCGCGGGTGAAATTGCCAATGCTCAAGATTTCATGGATAACCCGA
TCATTTATGCGTATGGCATGGCCACCACTCTTTTTGTTGGCACCATCTGG
CTGGCCGTAGCGAGCTATTATGGCTGGAACGTCTCTTCGACACATTCCAT
CATCGGAGGCATCATCGGCTTCGCCTGGACTTTCAAAGGCATCAGCGGCG
TCAACTGGATGACACACGACCCGACGTTCTGGCCACCCTACCGAGGAATA
GTTCCCATCGTCGTCTCCTGGTTCCTTGCCCCTGCCATGACTGCCCTCGC
CGCCGCCCTAATCTTCGGTGCCAAGAAGACACTGCGGGATATCGATCCCA
AGTGGAGCGATTCGACCGCGGCGTGGGTCGCTTTCGTGATTGCCGTGGGC
TTGGCACTGTTGACATGGGCGGCTGTGCCGTGGATGAGGAGGAAGATCGA
GGAAAAAGAAGCTGCAAAGTGCAGGGAGCTTGCGGCGAGATCGGTGGAGT
CGAAAAGGATTACCTCGGGGATGGGGAAAGGAGGAAAGAAGGAAGGGACA
GAGAGACCGTTGTCTCATCCTGAGGAAGAGGACGAAGACGGAGGGGAAAT
CGAGGGAGGGAGGGAAGGAGGAGAGGAGGGCAGGGAGATTAAAACAGAAA
AGGAAATTGGGAAAAAGGATTGGATGGGAATGGCGAAGCGAGCTATGTTG
CACGGGGTAACCGTGGATATCCATGAGATCATTCAAACGGACGAGACCGT
TGGGAGGATTCACGGGAGTGCCGAAGTGTTTGATGTGAAGGCAGAGGCGA
TTTTTGCGTACTTGCAGGTATTCAGTGCCATTTGTGTGATGTTTGCGCAT
GGCGCCGCAGAGGTCGGCTATATGAGTGGACCCCTGTCGAGTATTTACGA
CATTTACCAGAATGATGTGGTAAACAGGAAGTTGGTAGCGCCCGTGTGGA
TCACGTTTATCTCGGCGTTCTCCCTGGTTGTCGGTTTGGCAACCTATGGC
TACAATATCACCCGAGCTATGGGCACGCAAATGGCATGCCTCACGCCATC
CCGTGGTTTCGCTGCTGAGCTGGCGACGGCATTCGTCATCCTTGTCTGTT
CGCAGTGGGGTCTCCCGAATTCTTCTTCGCAGTGCATTGTCGGCGGCATC
GTTGGAGTGGGCTGTCTGGAGGGTCAGTCAGGTGTGAACTGGAGGTTCTT
CGGTATCACATTTGCGAGCTGGACAATGACACTGGTGATTATGGGAGGAG
GGACTGCACTGCTATTCGCCCAGGGTGTGTACGCACCTTGTCCAACTGAG
AGAGTGTGA

Synonyms

Publications