NO24G00010.1, NO24G00010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G00010.1
Unique NameNO24G00010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr24:765..3636 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:765..3636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO24G00010.1 vs.
Match: XP_004348649.1 (acid phosphatase 5a [Capsaspora owczarzaki ATCC 30864]; KJE91742.1 acid phosphatase 5a [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 232.6 bits (592), Expect = 1.900e-57
Identity = 127/321 (39.56%), Postives = 186/321 (57.94%), Query Frame = 0 
Query:   33 AAIEPTSWSFFTIGDWGSGKQNQSQVAATMGTWGNLYQPHFVVALGDNIYEEGVESVVDPLWTSRYCSVYTDPSLLDIPWYAILGNHDYYSGHSEAQIEYYRERMDPAQRWVMPDHYYTFRWPDVGGGRSLQIVFLDTIQLADDTYRRVLREDVEEGHAPPRALRQVEEEGTEEEREEERPPTGAQLDWLEATLAASTADWLLVAGHFPVYSAGHHGDTPELQRDVRPLMQKYNVDAYLCGHDHNLEYLLDAPEGEGVSYFVSGSGGQDVYGVKKTRETVFAVAESGFMHHAFLKGGKEMRVDVVNRDGQVLLSKTLRQKR 354
            AA E T   F T+GDWG     Q++VA  +G  G ++ P F+V++GDN Y+ GV +V DPLW + +  +YT PSL +I WY++LGNHD+  G+  AQ+ Y    +D  +RW MP  +YT       G  +LQ VF+DT+ ++ D Y   L   V +G     A+     +    +RE  R     QLDW++ TL++S ADWL+VAGH+PVYS G +G+ P+LQ D++PL++KY VDAYLCGHDH L+ L       GV Y VSG+G + +      ++  F  +  GFM  +F      M ++V +    VL  + + + R
Sbjct:   31 AAQEETPLHFLTLGDWGLNGDQQTEVAQALGNVGGIFHPSFLVSVGDNFYDVGVANVTDPLWKTAFDDIYTHPSL-NITWYSLLGNHDH-EGNISAQVAY--TNVDRNRRWHMPSSWYTQVVVLPDGLTTLQFVFIDTVIMSPDFYFNELEGMVADGRRSRSAV-----DAQLAKRETMRSDADVQLDWIKTTLSSSKADWLVVAGHYPVYSGGSNGNNPDLQDDLKPLLEKYQVDAYLCGHDHELQVL----HHNGVKYLVSGAGAK-LGKYNPIKQNRFGASTGGFMLQSF--NSTTMTINVYDTQSTVLYQEFVPRVR 335
The following BLAST results are available for this feature:
BLAST of NO24G00010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_004348649.11.900e-5739.56acid phosphatase 5a [Capsaspora owczarzaki ATCC 30... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G00010NO24G00010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G00010.1NO24G00010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G00010.1.cds1NO24G00010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds2NO24G00010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds3NO24G00010.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds4NO24G00010.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds5NO24G00010.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds6NO24G00010.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds7NO24G00010.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds8NO24G00010.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds9NO24G00010.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G00010.1.cds10NO24G00010.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G00010.1 ID=NO24G00010.1|Name=NO24G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1098bp
ATGCACTCGCCATTATCCTCACCATCACCGGCAAGTCTTTTCCTTCTTCC
CCTCCTCCCGTCCCTTTTTCCCCTCCTGACGTCTAGCGCCCTACCTGCCG
CCATCGAGCCGACTAGCTGGTCATTCTTCACGATAGGAGACTGGGGCTCG
GGTAAGCAGAACCAAAGCCAAGTGGCAGCTACGATGGGCACCTGGGGCAA
TCTTTACCAACCCCACTTCGTGGTGGCACTAGGCGACAACATCTACGAGG
AGGGCGTGGAGTCCGTGGTCGACCCGCTCTGGACCTCCCGCTACTGCTCG
GTCTATACGGACCCCTCCCTACTCGACATTCCGTGGTACGCCATCCTTGG
CAACCACGACTACTACAGCGGGCACTCAGAAGCCCAGATCGAGTACTACC
GGGAGCGGATGGACCCGGCGCAGCGGTGGGTGATGCCAGACCACTACTAC
ACGTTCAGATGGCCCGACGTTGGGGGCGGCCGAAGCCTGCAGATCGTCTT
CCTCGACACGATCCAGCTGGCCGACGACACGTACCGGCGGGTGCTGAGGG
AGGACGTGGAGGAGGGACATGCCCCGCCCCGCGCCCTCCGACAGGTGGAG
GAGGAGGGGACTGAGGAGGAAAGGGAGGAGGAGAGGCCCCCGACTGGTGC
GCAGTTGGACTGGCTGGAGGCGACGCTGGCGGCGTCAACGGCCGACTGGC
TCTTGGTCGCGGGGCACTTCCCCGTGTACTCGGCAGGCCACCATGGTGAC
ACGCCCGAGCTCCAGCGCGACGTCAGGCCCCTCATGCAGAAATACAATGT
GGACGCCTACTTGTGCGGCCACGACCATAACCTGGAGTACCTTCTCGACG
CGCCAGAGGGGGAGGGCGTGAGCTACTTCGTCTCCGGCAGCGGGGGCCAG
GACGTCTACGGCGTGAAGAAGACCAGGGAGACCGTTTTCGCCGTGGCGGA
GAGCGGCTTCATGCATCATGCGTTCCTGAAGGGGGGAAAGGAGATGCGGG
TGGACGTGGTGAACCGGGACGGGCAAGTGCTCTTGAGTAAAACGTTGCGG
CAGAAGAGGAAGCAGACGGTGACAGGAAAAGGGGGGGAGCGGGTGTGA
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protein sequence of NO24G00010.1

>NO24G00010.1-protein ID=NO24G00010.1-protein|Name=NO24G00010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MHSPLSSPSPASLFLLPLLPSLFPLLTSSALPAAIEPTSWSFFTIGDWGS
GKQNQSQVAATMGTWGNLYQPHFVVALGDNIYEEGVESVVDPLWTSRYCS
VYTDPSLLDIPWYAILGNHDYYSGHSEAQIEYYRERMDPAQRWVMPDHYY
TFRWPDVGGGRSLQIVFLDTIQLADDTYRRVLREDVEEGHAPPRALRQVE
EEGTEEEREEERPPTGAQLDWLEATLAASTADWLLVAGHFPVYSAGHHGD
TPELQRDVRPLMQKYNVDAYLCGHDHNLEYLLDAPEGEGVSYFVSGSGGQ
DVYGVKKTRETVFAVAESGFMHHAFLKGGKEMRVDVVNRDGQVLLSKTLR
QKRKQTVTGKGGERV*
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mRNA from alignment at chr24:765..3636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G00010.1 ID=NO24G00010.1|Name=NO24G00010.1|organism=Nannochloropsis oceanica|type=mRNA|length=2872bp|location=Sequence derived from alignment at chr24:765..3636+ (Nannochloropsis oceanica)
ATGCACTCGCCATTATCCTCACCATCACCGGCAAGTCTTTTCCTTCTTCC
CCTCCTCCCGTCCCTTTTTCCCCTCCTGACGTCTAGCGCCCTACCTGCCG
CCATCGAGCCGACTAGCTGGTCATTCTTCACGATAGGAGACTGGGTGCGT
GCGCCCGCTGCCCCCTTGCTCGTTCCCCCATCGAAACACATGCATAGCAA
CAGCTTTCATGGGTTACAGTTGTGCCTTGGTCTCCCCAGTGTTGCTTTCT
TCCGCCACCCTGTGCTGCTCCTTTTTGATAAAGCTGTCCCCCTCGCTCCC
ACCGCTCTCACCTCCCCGCCATTTTCCCGCAACTCCCTCTTTCTCTCCGC
AAAGGGCTCGGGTAAGCAGAACCAAAGCCAAGTGGCAGCTACGATGGGCA
CCTGGGGCAATCTTTACCAACCCCACTTCGTGGTGGCACTAGGTAAGGAG
AGAGGCCGGGAGGGGGAGAGGGAGGGAAGGGAATAGATTCAACTTCGAAG
GGGTTGCCATGATCGATGAAAAACAAGTAATAATGAGAACGGCATGCGCT
TGTATCGTGAAGCAGAAATACCGGGTATATGGAAGGAAGCTTATTCATTC
CCTTTCCTCGATTTTGGTCCCCTTCTCGCTCCTCGCGTAAGGCGACAACA
TCTACGAGGAGGGCGTGGAGTCCGTGGTCGACCCGCTCTGGACCTCCCGC
TACTGCTCGGTCTATACGGACCCCTCCCTACTCGACATTCCGTGGTACGC
CATCCTTGGTACGTGTAGTTGGCATCCCCTTCCTCCCCCTCTCCCTCCCT
TCCTCCGTCCTTTCCCTCACACTCTTGTTTTTGTCGATCCGTTTCTCAAC
CATTCCCCCCTCATTTCGTCCTTCCTTCTGTCCTCCATACTCCTTCCTTG
ACAGGCAACCACGACTACTACAGCGGGTGGGTCCGAGAGATGGAGGGAGG
GAGGAATGGAGGGGGAGAGCGGGGGCCCCTGTGCTGAATGACCTCATATC
CCTCCCTCCCTCCCTCCTCCCTCCTCCCCTTTCAGGCACTCAGAAGCCCA
GATCGAGTACTACCGGGAGCGGATGGACCCGGCGCAGCGGTGGGTGATGC
CAGACCACTACTACACGTTCAGATGGCCCGACGTTGGGGGCGGCCGAAGC
CTGCAGGTGCGCTAGCCCGCCAAGTGCCCTGCCTTGCCACCTCTCCCTCT
TTCCCCTCCCCCGTCCTCTTTTCCTTTTGTTCTGTCGTCTCGTAACGGTG
ACAGCCCTACCGGTCTCCACACTAGCACGCCTGCATCTCGCCTGATGATT
GATTGATTAATTGATTGATTGTTTGATTGATGGATGGATGGATAGATGGA
TGGATGGATAGATTGATTGGCTGGTTGATTGATTGATTGATTGATTGATT
GATTGATTGATTGGCTGGTTGATTGGTTGGTGGGTTGATTGATTGACCAG
CACGACCACACCTATGGCCTGACGAGGGCGGCGGCATGGATTCAACCTCC
CCTCCGCTTTCGTTCCTTACCTCCCTCCCTCCCTTTTTCCCGCCTTGTCC
CCAGATCGTCTTCCTCGACACGATCCAGCTGGCCGACGACACGTACCGGC
GGGTGCTGAGGGAGGACGTGGAGGAGGGACATGCCCCGCCCCGCGCCCTC
CGACAGGTGGAGGAGGAGGGGACTGAGGAGGAAAGGGAGGAGGAGAGGCC
CCCGACTGGTGTACGAAAGAAGGGCACGAGGAAGGAGGAGAAAGAGGGAT
GGGGGGAGGAGGGGTTAAGGAAGCGAGGGCGAAGAGGAAGCAGGCGCAGT
TGGACTGGCTGGAGGCGACGCTGGCGGCGTCAACGGCCGACTGGCTCTTG
GTCGCGGGGCACTTCCCCGTGTACTCGGCAGGCAAGGAGGGGGAGAGGGA
GGGAGGGAGCGAGGGAAGGGGGGAAGGGTGGGACACTGTGTGGTATTCTC
ATCGGAGGAGGAGCTTTGGTTTCTCTCGACCCGGCCCTCTCACCACTTCA
CATCTCCCTTCCTACCTGCCTTCCTTCCCTTCCTTCCTCCCGTCTTGGCA
GGCCACCATGGTGACACGCCCGAGCTCCAGCGCGACGTCAGGCCCCTCAT
GCAGAAATACAATGTGAGGATTCCGCCCTCCCCCCTTCCTCCCCCCCCCC
TCGCCTTCGCTGTCTCTCTTGTCCTTTTCCGCCTTCCTTTCTGCCTCTTC
AGCCCAATCCTTTCCATACCCCCCCATGGCCCACCCGCCTTCCCCTGCTT
TTCTCCTTGTGTCCCTAAGACCCAAAATTACGTCCTGGCCAATCCCACGC
GCGCCTCTCACCTCGGCTTCCCATCCTCCTCCCTCCCCCCCTCGCCCGCA
GGTGGACGCCTACTTGTGCGGCCACGACCATAACCTGGAGTACCTTCTCG
ACGCGCCAGAGGGGGAGGGCGTGAGCTACTTCGTCTCCGGCAGCGGGGGC
CAGGACGTCTACGGCGTGAAGAAGACCAGGGAGGTAGGTAATGCCTGCGT
GTCAGTATCCTCCCCTCCCCCTCCTCACCCACCGCTGCCTCCTTCCCTTC
CTCCGCAAGCCTGCGGTTGCACTGCCCGCCCAGCTCCGTTCCTTCCCTCC
ATTCCTACCTTTCGCCTCGTTCGCTTACCAACTCCTCCTCTCACAATGTC
CCCTCCCATTGCTCCCCTTTCTCCCCTCCCTCCTCCCCTTCTCCTACCTA
CCAGACCGTTTTCGCCGTGGCGGAGAGCGGCTTCATGCATCATGCGTTCC
TGAAGGGGGGAAAGGAGATGCGGGTGGACGTGGTGAACCGGGACGGGCAA
GTGCTCTTGAGTAAAACGTTGCGGCAGAAGAGGAAGCAGACGGTGACAGG
AAAAGGGGGGGAGCGGGTGTGA
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Coding sequence (CDS) from alignment at chr24:765..3636+

>NO24G00010.1 ID=NO24G00010.1|Name=NO24G00010.1|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at chr24:765..3636+ (Nannochloropsis oceanica)
ATGCACTCGCCATTATCCTCACCATCACCGGCAAGTCTTTTCCTTCTTCC
CCTCCTCCCGTCCCTTTTTCCCCTCCTGACGTCTAGCGCCCTACCTGCCG
CCATCGAGCCGACTAGCTGGTCATTCTTCACGATAGGAGACTGGGGCTCG
GGTAAGCAGAACCAAAGCCAAGTGGCAGCTACGATGGGCACCTGGGGCAA
TCTTTACCAACCCCACTTCGTGGTGGCACTAGGCGACAACATCTACGAGG
AGGGCGTGGAGTCCGTGGTCGACCCGCTCTGGACCTCCCGCTACTGCTCG
GTCTATACGGACCCCTCCCTACTCGACATTCCGTGGTACGCCATCCTTGG
CAACCACGACTACTACAGCGGGCACTCAGAAGCCCAGATCGAGTACTACC
GGGAGCGGATGGACCCGGCGCAGCGGTGGGTGATGCCAGACCACTACTAC
ACGTTCAGATGGCCCGACGTTGGGGGCGGCCGAAGCCTGCAGATCGTCTT
CCTCGACACGATCCAGCTGGCCGACGACACGTACCGGCGGGTGCTGAGGG
AGGACGTGGAGGAGGGACATGCCCCGCCCCGCGCCCTCCGACAGGTGGAG
GAGGAGGGGACTGAGGAGGAAAGGGAGGAGGAGAGGCCCCCGACTGGTGC
GCAGTTGGACTGGCTGGAGGCGACGCTGGCGGCGTCAACGGCCGACTGGC
TCTTGGTCGCGGGGCACTTCCCCGTGTACTCGGCAGGCCACCATGGTGAC
ACGCCCGAGCTCCAGCGCGACGTCAGGCCCCTCATGCAGAAATACAATGT
GGACGCCTACTTGTGCGGCCACGACCATAACCTGGAGTACCTTCTCGACG
CGCCAGAGGGGGAGGGCGTGAGCTACTTCGTCTCCGGCAGCGGGGGCCAG
GACGTCTACGGCGTGAAGAAGACCAGGGAGACCGTTTTCGCCGTGGCGGA
GAGCGGCTTCATGCATCATGCGTTCCTGAAGGGGGGAAAGGAGATGCGGG
TGGACGTGGTGAACCGGGACGGGCAAGTGCTCTTGAGTAAAACGTTGCGG
CAGAAGAGGAAGCAGACGGTGACAGGAAAAGGGGGGGAGCGGGTGTGA
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Synonyms
Publications