NO23G01850.1, NO23G01850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01850.1
Unique NameNO23G01850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2421
Alignment locationchr23:667217..669637 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:667217..669637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01850.1 vs.
Match: EWM27838.1 (oxidoreductase nad-binding domain-containing protein 1 precursor [Nannochloropsis gaditana])

HSP 1 Score: 399.8 bits (1026), Expect = 8.500e-108
Identity = 218/378 (57.67%), Postives = 265/378 (70.11%), Query Frame = 0 
Query:    5 MQRRAILSPLLSSATPIAASRHLRHCPCCHHMSSSSSPPASLPSP--------LPDDPSLTRAYITAIHTLSPSVRQLDLHILCGKSNSPRAPFSFLAGQWVDLYVPNLRHCGGFSMISSPESLPLLSLAIKGSPASRSIHARWAHTSEGAKEGDVVGLRVGGGFHFQMTEEHWMKGTRLVLLAGGVGINPLMSILAHVVGWVEERE-KQQEGGKEKEEEEEEGIEKDK----------------GRFQVSLIYSAAMRAELIFEEQIKEWTKMHASWLSVLFIVTREL--------GGEGAWDGRRE--RMDGILVWEAVEGEEGERGREKALVYICGPSNMTDEMERILIGG-EEEGMEGGR-RLRKAQVVTEKWW 346
            MQRRA+L P+L+S+T    SRHLRHC CCHH SS+ S  +S P+P        LPDDPS+T A +T IHTLSP+VRQLDL +LC K    R PFSF+AGQWVD +VP+L HCGGFSM+S PE LP LSLAIKGS  SRS+HARWAH++    EGDVVGLRVGGGFHFQMTE HW++GTRL L AGGVGINP+MSILAHVV W+E +E K +EG +E E    EG   D+                  F+V+L+YSAA RAEL+FEEQI++W + H+ W +VLFIVTRE         GGEG     RE  RMD  ++W+AVEG EG RGR+KALVY+CGP+ M D++E +L+G  + EG   GR  L  +QVV EKWW
Sbjct:   35 MQRRAVLKPVLASST--YPSRHLRHCSCCHHTSSTPSLHSSSPAPAENRPSASLPDDPSITHACVTGIHTLSPTVRQLDLRLLCNKELPARDPFSFVAGQWVDFFVPSLPHCGGFSMVSPPEILPRLSLAIKGSSLSRSLHARWAHST--VAEGDVVGLRVGGGFHFQMTEAHWVEGTRLTLFAGGVGINPMMSILAHVVSWIERKEVKSKEGREEGERLTGEGALDDRIARGLGVEENCAVRVQAPFRVALVYSAATRAELLFEEQIQKWAEQHSEWFTVLFIVTREKGEGKEREGGGEGGQLRYREGSRMDEKVIWDAVEGGEGIRGRKKALVYVCGPAKMIDDVEDMLLGKLKAEGAREGRCCLEASQVVAEKWW 408
The following BLAST results are available for this feature:
BLAST of NO23G01850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27838.18.500e-10857.67oxidoreductase nad-binding domain-containing prote... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01850NO23G01850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01850.1NO23G01850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01850.1.cds1NO23G01850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01850.1 ID=NO23G01850.1|Name=NO23G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp
GCGGATGTGGAGTTAGGGGCCGGCGCGTTAGATGGATGTGATGACGATGA
TGAATTTGCCGTCTACCTTGTGTACGGCCAGAGCGGGAACTACAGCGTCC
TGGTAGGAGCCCTTTATTGCCTGCGTTTAAAATGGTACCAATTTGAGCGT
GCGAGCAACGTGTATGGTAAGGTGAGAGTGGGATCCAGTGTAGTGTGAGG
TTGGTGTGGCGCGCACACTACCTCGCCGACGACGATGGCTTGGTGAGTGG
AGAGCTCTGAAAGCACACACGTGTCCTCCGCTACATGCTTCCACGCTAAC
TCATCAAGACTCTATACGCAAGCACAGCATGCCCATGCACAAGTGCGTGC
ATAAGACGCTCAAAATGGCCTGCTTTTCCCTCCTCTGTGGGTGACATTTT
AGGTTCTATACTCGCCTCCTCGTCGACCTCCTGCCTCCACATCCCACAGC
AAAACGCTCATTAAATGAGACAGGCACCCTTTTGGCGTCCCAGTGCTTAG
CAAGTGTCTCCGTTGCTCCCTTGAGCCCTGGGCATCTCTGCCTATCCTTG
CCGGCACTCTTTTCATAGAACCTTTTTCATTCATATCTACACACTCCCTT
TCTCGTATGCCCAATACGACGACCATAATATGCAGGAACGCATGCAAAGA
CGGGCCATTCTCTCCCCATTGCTGTCGTCCGCCACCCCCATAGCAGCCAG
CCGCCACCTCCGCCACTGCCCGTGCTGCCATCACATGTCATCCTCTTCCA
GCCCTCCGGCATCCCTCCCTTCTCCCCTCCCGGACGACCCTTCCCTCACC
CGCGCCTACATCACGGCTATTCACACTCTCAGTCCGAGTGTGCGCCAACT
TGATCTCCACATTCTGTGTGGCAAGAGCAATTCGCCTCGGGCACCCTTCT
CCTTCCTCGCCGGACAATGGGTTGACTTATACGTTCCAAATCTCCGACAC
TGTGGAGGATTCTCCATGATCTCCTCCCCCGAATCACTCCCTCTCCTCTC
ACTTGCCATCAAAGGCTCCCCTGCTTCCCGCTCTATCCACGCACGCTGGG
CGCACACATCAGAAGGCGCAAAGGAAGGCGATGTGGTCGGCCTAAGGGTA
GGAGGAGGATTTCACTTTCAAATGACGGAAGAGCACTGGATGAAGGGGAC
AAGGCTGGTGCTGCTTGCGGGAGGGGTGGGCATTAATCCACTCATGAGCA
TTTTGGCGCACGTGGTTGGGTGGGTGGAAGAGAGGGAAAAGCAGCAGGAG
GGTGGCAAGGAGAAAGAGGAAGAGGAGGAGGAAGGGATAGAGAAGGACAA
GGGTAGGTTTCAGGTGTCTCTCATTTACAGTGCAGCTATGCGAGCAGAGC
TAATTTTTGAGGAACAGATAAAGGAGTGGACAAAGATGCATGCCTCGTGG
CTGTCCGTGTTGTTTATCGTGACGAGGGAACTTGGAGGGGAGGGGGCGTG
GGACGGACGGAGGGAGAGAATGGATGGGATATTAGTGTGGGAGGCCGTTG
AAGGAGAAGAAGGGGAGAGAGGGAGGGAGAAGGCATTGGTGTACATATGT
GGGCCGTCGAACATGACAGATGAAATGGAGAGGATCCTGATTGGTGGGGA
AGAGGAAGGAATGGAGGGAGGGAGGCGTTTGAGGAAGGCGCAGGTGGTAA
CTGAGAAGTGGTGGTAAGGGTAGAAAAGAGAAGCGAGTGGTGTGAAGTAG
TTCCCCTAAAATCACAATGAAGTCAACGAAAGGTCAGACAAGGAGTTACT
TTCGGCTGCCTCACCACCACCGTTAATTCAATTTTGGTCCTATCGGAGAT
TATCAGATCTGAACGCATCGGCAGGACAAGAGGTGGCTCTCGGGTGGGAT
TGCAAAAAGATGCCGGCCTGGGTGGACGAGGACCGAGGCTCAAGGTCCAG
ACAGGAGAAGGATGGACATCAGTCAGCGAAATGGTTAGATAGACCCAATA
TAAGACGATTAAAGGATTCTTCGCCGCGCAGAGGCATCTCCTGCGCCAAG
GGCCATCCGCATCTCGAATTCATCAGGGTTCTGCGAGCTTGTGGCGTGCG
ACAAAGCAAGCGTCACATTTTACCTGGGTTGACCACGGCACACGGATGAA
AGGCTTGGGTCACGGGAAAAAAGATCTGTAATCACCGGGTCTGTAAACGA
AGGACTGATATCCAACTGATCCCCGCACAGCTGTAAGACCTACATATAAT
CCAGGAGGCTGAAGGATCCTATACGAAATTTTTTTCGTCCAAATAATCAA
AAGATTCAATACCTGCAAAACTGGTCCCGAGGCAAAAGAAAGGTCACCAC
CACCACCACCAGCAGAGCATCACCACCACCACCACCACCACCGTTGCCAT
CACTACAGTCTTCTTTGCGTCCCTTGGGCGTACCTTAGCTGGGTTTCAAC
GAAAAGGAAACACAACTTCAG
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protein sequence of NO23G01850.1

>NO23G01850.1-protein ID=NO23G01850.1-protein|Name=NO23G01850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MQERMQRRAILSPLLSSATPIAASRHLRHCPCCHHMSSSSSPPASLPSPL
PDDPSLTRAYITAIHTLSPSVRQLDLHILCGKSNSPRAPFSFLAGQWVDL
YVPNLRHCGGFSMISSPESLPLLSLAIKGSPASRSIHARWAHTSEGAKEG
DVVGLRVGGGFHFQMTEEHWMKGTRLVLLAGGVGINPLMSILAHVVGWVE
EREKQQEGGKEKEEEEEEGIEKDKGRFQVSLIYSAAMRAELIFEEQIKEW
TKMHASWLSVLFIVTRELGGEGAWDGRRERMDGILVWEAVEGEEGERGRE
KALVYICGPSNMTDEMERILIGGEEEGMEGGRRLRKAQVVTEKWW*
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mRNA from alignment at chr23:667217..669637+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01850.1 ID=NO23G01850.1|Name=NO23G01850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2421bp|location=Sequence derived from alignment at chr23:667217..669637+ (Nannochloropsis oceanica)
GCGGATGTGGAGTTAGGGGCCGGCGCGTTAGATGGATGTGATGACGATGA
TGAATTTGCCGTCTACCTTGTGTACGGCCAGAGCGGGAACTACAGCGTCC
TGGTAGGAGCCCTTTATTGCCTGCGTTTAAAATGGTACCAATTTGAGCGT
GCGAGCAACGTGTATGGTAAGGTGAGAGTGGGATCCAGTGTAGTGTGAGG
TTGGTGTGGCGCGCACACTACCTCGCCGACGACGATGGCTTGGTGAGTGG
AGAGCTCTGAAAGCACACACGTGTCCTCCGCTACATGCTTCCACGCTAAC
TCATCAAGACTCTATACGCAAGCACAGCATGCCCATGCACAAGTGCGTGC
ATAAGACGCTCAAAATGGCCTGCTTTTCCCTCCTCTGTGGGTGACATTTT
AGGTTCTATACTCGCCTCCTCGTCGACCTCCTGCCTCCACATCCCACAGC
AAAACGCTCATTAAATGAGACAGGCACCCTTTTGGCGTCCCAGTGCTTAG
CAAGTGTCTCCGTTGCTCCCTTGAGCCCTGGGCATCTCTGCCTATCCTTG
CCGGCACTCTTTTCATAGAACCTTTTTCATTCATATCTACACACTCCCTT
TCTCGTATGCCCAATACGACGACCATAATATGCAGGAACGCATGCAAAGA
CGGGCCATTCTCTCCCCATTGCTGTCGTCCGCCACCCCCATAGCAGCCAG
CCGCCACCTCCGCCACTGCCCGTGCTGCCATCACATGTCATCCTCTTCCA
GCCCTCCGGCATCCCTCCCTTCTCCCCTCCCGGACGACCCTTCCCTCACC
CGCGCCTACATCACGGCTATTCACACTCTCAGTCCGAGTGTGCGCCAACT
TGATCTCCACATTCTGTGTGGCAAGAGCAATTCGCCTCGGGCACCCTTCT
CCTTCCTCGCCGGACAATGGGTTGACTTATACGTTCCAAATCTCCGACAC
TGTGGAGGATTCTCCATGATCTCCTCCCCCGAATCACTCCCTCTCCTCTC
ACTTGCCATCAAAGGCTCCCCTGCTTCCCGCTCTATCCACGCACGCTGGG
CGCACACATCAGAAGGCGCAAAGGAAGGCGATGTGGTCGGCCTAAGGGTA
GGAGGAGGATTTCACTTTCAAATGACGGAAGAGCACTGGATGAAGGGGAC
AAGGCTGGTGCTGCTTGCGGGAGGGGTGGGCATTAATCCACTCATGAGCA
TTTTGGCGCACGTGGTTGGGTGGGTGGAAGAGAGGGAAAAGCAGCAGGAG
GGTGGCAAGGAGAAAGAGGAAGAGGAGGAGGAAGGGATAGAGAAGGACAA
GGGTAGGTTTCAGGTGTCTCTCATTTACAGTGCAGCTATGCGAGCAGAGC
TAATTTTTGAGGAACAGATAAAGGAGTGGACAAAGATGCATGCCTCGTGG
CTGTCCGTGTTGTTTATCGTGACGAGGGAACTTGGAGGGGAGGGGGCGTG
GGACGGACGGAGGGAGAGAATGGATGGGATATTAGTGTGGGAGGCCGTTG
AAGGAGAAGAAGGGGAGAGAGGGAGGGAGAAGGCATTGGTGTACATATGT
GGGCCGTCGAACATGACAGATGAAATGGAGAGGATCCTGATTGGTGGGGA
AGAGGAAGGAATGGAGGGAGGGAGGCGTTTGAGGAAGGCGCAGGTGGTAA
CTGAGAAGTGGTGGTAAGGGTAGAAAAGAGAAGCGAGTGGTGTGAAGTAG
TTCCCCTAAAATCACAATGAAGTCAACGAAAGGTCAGACAAGGAGTTACT
TTCGGCTGCCTCACCACCACCGTTAATTCAATTTTGGTCCTATCGGAGAT
TATCAGATCTGAACGCATCGGCAGGACAAGAGGTGGCTCTCGGGTGGGAT
TGCAAAAAGATGCCGGCCTGGGTGGACGAGGACCGAGGCTCAAGGTCCAG
ACAGGAGAAGGATGGACATCAGTCAGCGAAATGGTTAGATAGACCCAATA
TAAGACGATTAAAGGATTCTTCGCCGCGCAGAGGCATCTCCTGCGCCAAG
GGCCATCCGCATCTCGAATTCATCAGGGTTCTGCGAGCTTGTGGCGTGCG
ACAAAGCAAGCGTCACATTTTACCTGGGTTGACCACGGCACACGGATGAA
AGGCTTGGGTCACGGGAAAAAAGATCTGTAATCACCGGGTCTGTAAACGA
AGGACTGATATCCAACTGATCCCCGCACAGCTGTAAGACCTACATATAAT
CCAGGAGGCTGAAGGATCCTATACGAAATTTTTTTCGTCCAAATAATCAA
AAGATTCAATACCTGCAAAACTGGTCCCGAGGCAAAAGAAAGGTCACCAC
CACCACCACCAGCAGAGCATCACCACCACCACCACCACCACCGTTGCCAT
CACTACAGTCTTCTTTGCGTCCCTTGGGCGTACCTTAGCTGGGTTTCAAC
GAAAAGGAAACACAACTTCAG
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Coding sequence (CDS) from alignment at chr23:667217..669637+

>NO23G01850.1 ID=NO23G01850.1|Name=NO23G01850.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr23:667217..669637+ (Nannochloropsis oceanica)
ATGCAGGAACGCATGCAAAGACGGGCCATTCTCTCCCCATTGCTGTCGTC
CGCCACCCCCATAGCAGCCAGCCGCCACCTCCGCCACTGCCCGTGCTGCC
ATCACATGTCATCCTCTTCCAGCCCTCCGGCATCCCTCCCTTCTCCCCTC
CCGGACGACCCTTCCCTCACCCGCGCCTACATCACGGCTATTCACACTCT
CAGTCCGAGTGTGCGCCAACTTGATCTCCACATTCTGTGTGGCAAGAGCA
ATTCGCCTCGGGCACCCTTCTCCTTCCTCGCCGGACAATGGGTTGACTTA
TACGTTCCAAATCTCCGACACTGTGGAGGATTCTCCATGATCTCCTCCCC
CGAATCACTCCCTCTCCTCTCACTTGCCATCAAAGGCTCCCCTGCTTCCC
GCTCTATCCACGCACGCTGGGCGCACACATCAGAAGGCGCAAAGGAAGGC
GATGTGGTCGGCCTAAGGGTAGGAGGAGGATTTCACTTTCAAATGACGGA
AGAGCACTGGATGAAGGGGACAAGGCTGGTGCTGCTTGCGGGAGGGGTGG
GCATTAATCCACTCATGAGCATTTTGGCGCACGTGGTTGGGTGGGTGGAA
GAGAGGGAAAAGCAGCAGGAGGGTGGCAAGGAGAAAGAGGAAGAGGAGGA
GGAAGGGATAGAGAAGGACAAGGGTAGGTTTCAGGTGTCTCTCATTTACA
GTGCAGCTATGCGAGCAGAGCTAATTTTTGAGGAACAGATAAAGGAGTGG
ACAAAGATGCATGCCTCGTGGCTGTCCGTGTTGTTTATCGTGACGAGGGA
ACTTGGAGGGGAGGGGGCGTGGGACGGACGGAGGGAGAGAATGGATGGGA
TATTAGTGTGGGAGGCCGTTGAAGGAGAAGAAGGGGAGAGAGGGAGGGAG
AAGGCATTGGTGTACATATGTGGGCCGTCGAACATGACAGATGAAATGGA
GAGGATCCTGATTGGTGGGGAAGAGGAAGGAATGGAGGGAGGGAGGCGTT
TGAGGAAGGCGCAGGTGGTAACTGAGAAGTGGTGGTAA
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Synonyms
Publications