NO23G01680.1, NO23G01680.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01680.1
Unique NameNO23G01680.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2286
Alignment locationchr23:615880..618165 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:615880..618165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01680.1 vs.
Match: EWM27793.1 (Major facilitator superfamily domain, general substrate transporter [Nannochloropsis gaditana])

HSP 1 Score: 759.2 bits (1959), Expect = 7.800e-216
Identity = 400/495 (80.81%), Postives = 435/495 (87.88%), Query Frame = 0 
Query:    1 MKLPILLL--VTVLAGSVSASVAGPKASTTTPLPNNGDRLLAGRRGGFKLPTKAA---SSPVKGPAAQTKT-KDVAPIKWGGVSTVLGGALAHLALGTLYCWGNFQSYVPKHLLFFDGKIKSGQPDAALVFPLTIASQVLGLPLGPIFQRKIGERNALLLGCLLMAAGVFLSSFATNLSMFMVFYSLFFGVGVGIAYTAPIVAGWKWFPNSKGLVSGAVLTGFGAGGFFFNLLGTKLINPNNEKPVRGAFSPALTAGFGPLLRKLSAFYVVLAVVGSLLVSTPKA-ITGKSSSKAKTAVAAGPDYTPGQALISLQFWWIWVIIFLMSTGSLATAGVNKAFGVTFPELRSDSYLSMVLALSALFNGGGRLFWGSMSDKYGFKNAFMAMAGVQAVTLGIYDKLAASKLTFALGTMSVYFTLGGAFAMFPPAIQKRFGARNGVTIYSYIFTAFAVASIGGSILAKRLVAYFGGYENVFKLFSASSLGALGLAALLPEN 489
            MK+  L +   TVL G+VSASVAG KAS         + LL   RGGFKLP+KA    S PVK P    KT K+   I+WGGVSTVLGGALAHLALGTLYCWGNFQSYVPKHLLFFDG +KSGQPDAALVFPLTI +QVLGLPLGPIFQ++IGERNALLLGCLLMA GVFLSSFAT+LSMFM+FYSLFFGVGVGIAYTAPIVAGWKWFP++KGLVSGAVLTGFGAGGFFFNLLGTK+INP NEKP++GAFSPALTAGF PLLRKL+  YV LAV+GSLLVS PK+       SKAK AV  GPDYTPGQAL SLQFWWIW II LMS+GSLATAGVNKAFG+TFPELRSDS+LSMVLALSALFNGGGRLFWGSMSDK+GFK+AF+AMA VQAVTL +YDKLA+SKLTFALGTMSVYFTLGG FAMFPPA+QKRFGARNGVTIYSY+FTAFA+AS+GGSILAKRLVAYFGGYENVFK+FSASS+GALGLAALLPEN
Sbjct:    1 MKISSLFVFAATVLLGTVSASVAGSKASAHCLPTGTENELLTRHRGGFKLPSKATTAVSPPVKKPTDVKKTTKNAKSIEWGGVSTVLGGALAHLALGTLYCWGNFQSYVPKHLLFFDGTVKSGQPDAALVFPLTITAQVLGLPLGPIFQKRIGERNALLLGCLLMATGVFLSSFATSLSMFMLFYSLFFGVGVGIAYTAPIVAGWKWFPDNKGLVSGAVLTGFGAGGFFFNLLGTKIINPLNEKPIKGAFSPALTAGFAPLLRKLAGCYVALAVLGSLLVSAPKSPAIQAGKSKAKQAV-IGPDYTPGQALTSLQFWWIWAIILLMSSGSLATAGVNKAFGLTFPELRSDSFLSMVLALSALFNGGGRLFWGSMSDKFGFKHAFIAMATVQAVTLALYDKLASSKLTFALGTMSVYFTLGGVFAMFPPAVQKRFGARNGVTIYSYLFTAFALASVGGSILAKRLVAYFGGYENVFKIFSASSVGALGLAALLPEN 494
The following BLAST results are available for this feature:
BLAST of NO23G01680.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27793.17.800e-21680.81Major facilitator superfamily domain, general subs... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01680NO23G01680Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01680.1NO23G01680.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01680.1.cds1NO23G01680.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01680.1 ID=NO23G01680.1|Name=NO23G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp
GCCCTCTGTACAGCAAAGTAGCCGAGCAAAGTAGCCGCTCAGCAGGGCAA
AGGTCGGCCCATGGTTCTTTCCTTTCCTCTTCTCTCGCATGACAAAAGGA
CGAGCTTTAGGGATTCTGCCTAGACTGTATCTATGCTGCCTATGTAAGCA
ACTGTGTCGTCTTGCTCCCGCTGTAATGACTTTTCAATTCCTTTCACATT
CGCATGCATTTCCTTTGCCTCTCACCCCCCTCTTACGCCCTCATTCTGCC
TGATTCGCTCGCTGATTGCAACGACACATGATCATGACTCCCTGCGCACG
ACGACGCGACCCTTATCTATGCGTCTGAGCCACCACACAAAGTGTAAACC
TCACACAGACCTTCACTCTGCGCCTTTCATTAGCCCAAGCTCAAGCGCAC
GTGCGTCAGCGGGGTACGACGTAAGACCTCTCGCCTACGACCTCCCCAAA
TCAAATCATTTACGACTTCTTTCTGTCGAAACCTACCGCATCTCACTCCC
TCCGTCAACATTCTCGCCTTCCCGCACTGGCTCTATACCCTACAGCTCGG
CATGAAGCTCCCGATTCTCCTCCTCGTTACAGTCCTGGCTGGCAGCGTCT
CGGCGTCGGTGGCAGGACCCAAGGCCAGCACCACCACACCCCTCCCTAAT
AACGGCGACAGGCTTCTTGCCGGGCGTCGAGGTGGGTTCAAGCTCCCTAC
CAAGGCCGCTTCTTCCCCTGTCAAGGGGCCTGCGGCTCAAACCAAGACCA
AAGACGTCGCCCCAATTAAGTGGGGAGGTGTCTCCACCGTCCTAGGTGGT
GCCCTGGCGCACCTGGCCCTCGGCACCCTCTACTGCTGGGGTAATTTCCA
GTCCTACGTCCCCAAGCATCTTCTGTTCTTCGACGGAAAGATCAAGTCAG
GGCAGCCTGATGCTGCTCTTGTGTTTCCCTTGACCATTGCTTCGCAAGTG
CTGGGGCTGCCCCTTGGTCCGATTTTTCAACGCAAAATTGGGGAGCGCAA
TGCCTTGCTGCTCGGGTGCTTGTTGATGGCCGCGGGCGTGTTTTTGTCGT
CGTTTGCGACGAACTTGTCGATGTTCATGGTCTTTTACTCGCTCTTCTTC
GGGGTGGGCGTGGGTATTGCTTACACTGCTCCTATCGTGGCAGGGTGGAA
GTGGTTCCCTAACAGCAAGGGCCTTGTGTCGGGCGCTGTACTGACGGGCT
TTGGCGCCGGTGGCTTCTTCTTCAACCTTCTGGGGACAAAGCTTATCAAC
CCGAACAACGAGAAGCCCGTCAGGGGCGCCTTTTCTCCGGCGCTCACAGC
GGGATTCGGCCCGCTCTTGCGCAAGCTCTCTGCGTTCTATGTCGTGCTGG
CTGTCGTAGGGTCCCTCTTGGTCTCCACCCCTAAGGCCATAACTGGCAAG
AGCAGTAGCAAGGCCAAGACTGCCGTAGCTGCAGGTCCCGACTACACACC
GGGCCAGGCCTTAATCTCGCTGCAGTTCTGGTGGATCTGGGTGATCATTT
TCTTAATGTCAACCGGGTCGTTGGCGACAGCGGGGGTGAACAAGGCGTTC
GGCGTAACTTTTCCCGAGCTTCGTTCCGACTCGTACCTGTCGATGGTCCT
GGCGTTGTCTGCGCTCTTCAACGGTGGGGGCCGACTGTTCTGGGGGAGCA
TGTCGGATAAGTACGGCTTCAAGAATGCTTTTATGGCCATGGCGGGGGTG
CAAGCCGTGACCCTGGGGATCTATGATAAGCTGGCCGCGTCTAAGCTAAC
ATTCGCGCTCGGGACCATGTCGGTGTACTTTACCTTGGGGGGGGCCTTCG
CCATGTTCCCGCCGGCGATCCAGAAGAGGTTTGGAGCGCGGAACGGGGTG
ACGATCTATTCGTACATCTTCACGGCATTCGCAGTGGCGTCGATCGGAGG
CAGCATTTTGGCGAAGCGCTTGGTGGCGTACTTTGGTGGGTATGAGAATG
TATTCAAGCTGTTCAGTGCTTCCTCGTTGGGGGCATTAGGGCTGGCGGCG
CTGTTGCCGGAGAACTGAAGCGGGATTCCAGGGTGAAGGCCTCAGGGGAA
TGATTGATCTTCGAAATGGTCAACATATGTGTGTTTGTGTGATTTATTTG
ATTTGTGTCATGCACGAGAAAAAGTGTAATGCGAGTTCAAGGGAAGTTGG
GGTTTCACAAAAGAAAAAGATGGAGTATTGTTTATTTGGATTACAGATGC
CTTGCATTTAACGCCCGTGCCTTGAGTTGGAACGAGAGTAAAATGGGGAA
ATTCTAAATGAACAATAAGATGCTGTTGCTGCGGTG
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protein sequence of NO23G01680.1

>NO23G01680.1-protein ID=NO23G01680.1-protein|Name=NO23G01680.1|organism=Nannochloropsis oceanica|type=polypeptide|length=489bp
MKLPILLLVTVLAGSVSASVAGPKASTTTPLPNNGDRLLAGRRGGFKLPT
KAASSPVKGPAAQTKTKDVAPIKWGGVSTVLGGALAHLALGTLYCWGNFQ
SYVPKHLLFFDGKIKSGQPDAALVFPLTIASQVLGLPLGPIFQRKIGERN
ALLLGCLLMAAGVFLSSFATNLSMFMVFYSLFFGVGVGIAYTAPIVAGWK
WFPNSKGLVSGAVLTGFGAGGFFFNLLGTKLINPNNEKPVRGAFSPALTA
GFGPLLRKLSAFYVVLAVVGSLLVSTPKAITGKSSSKAKTAVAAGPDYTP
GQALISLQFWWIWVIIFLMSTGSLATAGVNKAFGVTFPELRSDSYLSMVL
ALSALFNGGGRLFWGSMSDKYGFKNAFMAMAGVQAVTLGIYDKLAASKLT
FALGTMSVYFTLGGAFAMFPPAIQKRFGARNGVTIYSYIFTAFAVASIGG
SILAKRLVAYFGGYENVFKLFSASSLGALGLAALLPEN*
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mRNA from alignment at chr23:615880..618165+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01680.1 ID=NO23G01680.1|Name=NO23G01680.1|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp|location=Sequence derived from alignment at chr23:615880..618165+ (Nannochloropsis oceanica)
GCCCTCTGTACAGCAAAGTAGCCGAGCAAAGTAGCCGCTCAGCAGGGCAA
AGGTCGGCCCATGGTTCTTTCCTTTCCTCTTCTCTCGCATGACAAAAGGA
CGAGCTTTAGGGATTCTGCCTAGACTGTATCTATGCTGCCTATGTAAGCA
ACTGTGTCGTCTTGCTCCCGCTGTAATGACTTTTCAATTCCTTTCACATT
CGCATGCATTTCCTTTGCCTCTCACCCCCCTCTTACGCCCTCATTCTGCC
TGATTCGCTCGCTGATTGCAACGACACATGATCATGACTCCCTGCGCACG
ACGACGCGACCCTTATCTATGCGTCTGAGCCACCACACAAAGTGTAAACC
TCACACAGACCTTCACTCTGCGCCTTTCATTAGCCCAAGCTCAAGCGCAC
GTGCGTCAGCGGGGTACGACGTAAGACCTCTCGCCTACGACCTCCCCAAA
TCAAATCATTTACGACTTCTTTCTGTCGAAACCTACCGCATCTCACTCCC
TCCGTCAACATTCTCGCCTTCCCGCACTGGCTCTATACCCTACAGCTCGG
CATGAAGCTCCCGATTCTCCTCCTCGTTACAGTCCTGGCTGGCAGCGTCT
CGGCGTCGGTGGCAGGACCCAAGGCCAGCACCACCACACCCCTCCCTAAT
AACGGCGACAGGCTTCTTGCCGGGCGTCGAGGTGGGTTCAAGCTCCCTAC
CAAGGCCGCTTCTTCCCCTGTCAAGGGGCCTGCGGCTCAAACCAAGACCA
AAGACGTCGCCCCAATTAAGTGGGGAGGTGTCTCCACCGTCCTAGGTGGT
GCCCTGGCGCACCTGGCCCTCGGCACCCTCTACTGCTGGGGTAATTTCCA
GTCCTACGTCCCCAAGCATCTTCTGTTCTTCGACGGAAAGATCAAGTCAG
GGCAGCCTGATGCTGCTCTTGTGTTTCCCTTGACCATTGCTTCGCAAGTG
CTGGGGCTGCCCCTTGGTCCGATTTTTCAACGCAAAATTGGGGAGCGCAA
TGCCTTGCTGCTCGGGTGCTTGTTGATGGCCGCGGGCGTGTTTTTGTCGT
CGTTTGCGACGAACTTGTCGATGTTCATGGTCTTTTACTCGCTCTTCTTC
GGGGTGGGCGTGGGTATTGCTTACACTGCTCCTATCGTGGCAGGGTGGAA
GTGGTTCCCTAACAGCAAGGGCCTTGTGTCGGGCGCTGTACTGACGGGCT
TTGGCGCCGGTGGCTTCTTCTTCAACCTTCTGGGGACAAAGCTTATCAAC
CCGAACAACGAGAAGCCCGTCAGGGGCGCCTTTTCTCCGGCGCTCACAGC
GGGATTCGGCCCGCTCTTGCGCAAGCTCTCTGCGTTCTATGTCGTGCTGG
CTGTCGTAGGGTCCCTCTTGGTCTCCACCCCTAAGGCCATAACTGGCAAG
AGCAGTAGCAAGGCCAAGACTGCCGTAGCTGCAGGTCCCGACTACACACC
GGGCCAGGCCTTAATCTCGCTGCAGTTCTGGTGGATCTGGGTGATCATTT
TCTTAATGTCAACCGGGTCGTTGGCGACAGCGGGGGTGAACAAGGCGTTC
GGCGTAACTTTTCCCGAGCTTCGTTCCGACTCGTACCTGTCGATGGTCCT
GGCGTTGTCTGCGCTCTTCAACGGTGGGGGCCGACTGTTCTGGGGGAGCA
TGTCGGATAAGTACGGCTTCAAGAATGCTTTTATGGCCATGGCGGGGGTG
CAAGCCGTGACCCTGGGGATCTATGATAAGCTGGCCGCGTCTAAGCTAAC
ATTCGCGCTCGGGACCATGTCGGTGTACTTTACCTTGGGGGGGGCCTTCG
CCATGTTCCCGCCGGCGATCCAGAAGAGGTTTGGAGCGCGGAACGGGGTG
ACGATCTATTCGTACATCTTCACGGCATTCGCAGTGGCGTCGATCGGAGG
CAGCATTTTGGCGAAGCGCTTGGTGGCGTACTTTGGTGGGTATGAGAATG
TATTCAAGCTGTTCAGTGCTTCCTCGTTGGGGGCATTAGGGCTGGCGGCG
CTGTTGCCGGAGAACTGAAGCGGGATTCCAGGGTGAAGGCCTCAGGGGAA
TGATTGATCTTCGAAATGGTCAACATATGTGTGTTTGTGTGATTTATTTG
ATTTGTGTCATGCACGAGAAAAAGTGTAATGCGAGTTCAAGGGAAGTTGG
GGTTTCACAAAAGAAAAAGATGGAGTATTGTTTATTTGGATTACAGATGC
CTTGCATTTAACGCCCGTGCCTTGAGTTGGAACGAGAGTAAAATGGGGAA
ATTCTAAATGAACAATAAGATGCTGTTGCTGCGGTG
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Coding sequence (CDS) from alignment at chr23:615880..618165+

>NO23G01680.1 ID=NO23G01680.1|Name=NO23G01680.1|organism=Nannochloropsis oceanica|type=CDS|length=1467bp|location=Sequence derived from alignment at chr23:615880..618165+ (Nannochloropsis oceanica)
ATGAAGCTCCCGATTCTCCTCCTCGTTACAGTCCTGGCTGGCAGCGTCTC
GGCGTCGGTGGCAGGACCCAAGGCCAGCACCACCACACCCCTCCCTAATA
ACGGCGACAGGCTTCTTGCCGGGCGTCGAGGTGGGTTCAAGCTCCCTACC
AAGGCCGCTTCTTCCCCTGTCAAGGGGCCTGCGGCTCAAACCAAGACCAA
AGACGTCGCCCCAATTAAGTGGGGAGGTGTCTCCACCGTCCTAGGTGGTG
CCCTGGCGCACCTGGCCCTCGGCACCCTCTACTGCTGGGGTAATTTCCAG
TCCTACGTCCCCAAGCATCTTCTGTTCTTCGACGGAAAGATCAAGTCAGG
GCAGCCTGATGCTGCTCTTGTGTTTCCCTTGACCATTGCTTCGCAAGTGC
TGGGGCTGCCCCTTGGTCCGATTTTTCAACGCAAAATTGGGGAGCGCAAT
GCCTTGCTGCTCGGGTGCTTGTTGATGGCCGCGGGCGTGTTTTTGTCGTC
GTTTGCGACGAACTTGTCGATGTTCATGGTCTTTTACTCGCTCTTCTTCG
GGGTGGGCGTGGGTATTGCTTACACTGCTCCTATCGTGGCAGGGTGGAAG
TGGTTCCCTAACAGCAAGGGCCTTGTGTCGGGCGCTGTACTGACGGGCTT
TGGCGCCGGTGGCTTCTTCTTCAACCTTCTGGGGACAAAGCTTATCAACC
CGAACAACGAGAAGCCCGTCAGGGGCGCCTTTTCTCCGGCGCTCACAGCG
GGATTCGGCCCGCTCTTGCGCAAGCTCTCTGCGTTCTATGTCGTGCTGGC
TGTCGTAGGGTCCCTCTTGGTCTCCACCCCTAAGGCCATAACTGGCAAGA
GCAGTAGCAAGGCCAAGACTGCCGTAGCTGCAGGTCCCGACTACACACCG
GGCCAGGCCTTAATCTCGCTGCAGTTCTGGTGGATCTGGGTGATCATTTT
CTTAATGTCAACCGGGTCGTTGGCGACAGCGGGGGTGAACAAGGCGTTCG
GCGTAACTTTTCCCGAGCTTCGTTCCGACTCGTACCTGTCGATGGTCCTG
GCGTTGTCTGCGCTCTTCAACGGTGGGGGCCGACTGTTCTGGGGGAGCAT
GTCGGATAAGTACGGCTTCAAGAATGCTTTTATGGCCATGGCGGGGGTGC
AAGCCGTGACCCTGGGGATCTATGATAAGCTGGCCGCGTCTAAGCTAACA
TTCGCGCTCGGGACCATGTCGGTGTACTTTACCTTGGGGGGGGCCTTCGC
CATGTTCCCGCCGGCGATCCAGAAGAGGTTTGGAGCGCGGAACGGGGTGA
CGATCTATTCGTACATCTTCACGGCATTCGCAGTGGCGTCGATCGGAGGC
AGCATTTTGGCGAAGCGCTTGGTGGCGTACTTTGGTGGGTATGAGAATGT
ATTCAAGCTGTTCAGTGCTTCCTCGTTGGGGGCATTAGGGCTGGCGGCGC
TGTTGCCGGAGAACTGA
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Synonyms
Publications