NO23G01670.1, NO23G01670.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01670.1
Unique NameNO23G01670.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1779
Alignment locationchr23:613283..615827 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:613283..615827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01670.1 vs.
Match: XP_005853677.1 (mitogen-activated protein kinase [Nannochloropsis gaditana CCMP526]; EKU22681.1 mitogen-activated protein kinase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 600.1 bits (1546), Expect = 4.900e-168
Identity = 278/342 (81.29%), Postives = 309/342 (90.35%), Query Frame = 0 
Query:   51 MASTQQIARAPPASLPTKVRRNLVGHKGPIFTVRFNAKGTYCMTGGQDKTLKLWNPFRSSADTNKPGEALLVQSYTGPHGYEVRDVAISKDNARFASCGGDKVFFLWDVATARVVRKFTGHAHMINAVAFNEEASVVLSASYDRTVKIWDLRSNNRDPIQTLDDFKDSVTRVCVLEEGGRGGGRGGGGGAREILATSVDGCLRTYDLRKGMVRVDDCQEPLSSLCLSGDGQCVLMNGLDGVVRLLERGTGEMLNSYQGHVHQAYPIESCFDHTDAFVLSGSEDGSLYIWDLVEGGREGGKEGKPAAVLREHKRALGSLSFHPSEPVLVTVGYDGVGCCWFRD 393
            MA   Q +R PP SLPTKVRR LVGH+GPI+T+RFN KGTYCMTGGQDK++KLWNPFR SAD NK GEA+LVQ++TGPHGYE+RDVAI+ DNARFASCGGD  F+LWDVATARVV+KF+GHAHMIN+VAFN E +VVLS SYDRTVKIWDLRSNNRDPIQTLDDFKDSVTRV VLEEGGR    G G G +E+LATSVDGCLRTYD+RKG++ +DDC+EPLSS+ +SGDGQCVLMNGLDGVVRLLER TGEMLN+YQGH HQAYPIESCFD+TDAFVLSGSEDGSLY+WDLVEGG EGGKEGKP AVL+EHKRALGS+SFHPSE VLVT GYDGVGCCWFR+
Sbjct:    1 MAPIHQASRVPPPSLPTKVRRKLVGHRGPIYTIRFNEKGTYCMTGGQDKSIKLWNPFRPSADANKAGEAMLVQTFTGPHGYEIRDVAITTDNARFASCGGDTAFYLWDVATARVVKKFSGHAHMINSVAFNAEGTVVLSGSYDRTVKIWDLRSNNRDPIQTLDDFKDSVTRVMVLEEGGRA---GKGAGGKEVLATSVDGCLRTYDIRKGVMWMDDCKEPLSSVTVSGDGQCVLMNGLDGVVRLLERSTGEMLNNYQGHTHQAYPIESCFDNTDAFVLSGSEDGSLYVWDLVEGGSEGGKEGKPVAVLKEHKRALGSMSFHPSEAVLVTAGYDGVGCCWFRE 339
The following BLAST results are available for this feature:
BLAST of NO23G01670.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853677.14.900e-16881.29mitogen-activated protein kinase [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01670NO23G01670Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01670.1NO23G01670.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01670.1.cds1NO23G01670.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01670.1.cds2NO23G01670.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01670.1.cds3NO23G01670.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01670.1.cds4NO23G01670.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01670.1.cds5NO23G01670.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01670.1.cds6NO23G01670.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01670.1 ID=NO23G01670.1|Name=NO23G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp
CTCGCGCAACATTTTATTCTGGTTTGCTCATTCGGCAATTTCCAGCTCCA
TTCATGACTTGCCACGATTATCCTTACGCAGCGGGAGAGTTTACCGCGCT
TGCACTATCCTCCAACAACATCTCTGTTCTTGATAGTGACTCCAGTACTA
CAACCGGCTCGGAGAAGAAGGGACTCACAGTCGATGCCGGTGACCTGAGA
ATCGTTTCTTTTCTGGAGCAGGTCAAGGATTTTTTTTTAGGTGCTTGTGC
CCCACATACAACAATGTCCACACCCGCCCAGGCCAGGGAGGGCTGACCTG
CTCAGGATGGGCTTCGATACATTGCCGCAGCTGTGCCTCCTTTAGGTCTT
TCAAACTTACGTTCTGATGAAGCATTTGATCCTACATGGTGCTCTTAAAA
TGTGTCTTGGCCTGCGTATTGTGTGTGTTTCTTGATTTGGTACATGAGAT
TCATGCACACGTTCACGTCGAGAAAGGAAAGACCTCCCCATGAAAGAAAT
GGCCGCCACCCCTTTTAAGCTCACTGCTGGCGTCCAAAGAGAAACACGCC
ACCACGAGCACAACAATCGCAAACACAAGCAAACTCTGGTTAAATCGCTT
TGGGCCTATGAACTCTCCCCAAGAAGCCCGACTTGCTGGATGGCATCGAC
ACAGCAAATAGCACGTGCTCCACCAGCTTCCCTACCTACCAAGGTCCGTC
GCAACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCCGTTTCAATGCC
AAGGGCACGTATTGCATGACCGGCGGGCAAGACAAGACACTTAAGCTATG
GAACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGGAGAAGCCTTGT
TGGTACAAAGCTACACCGGGCCGCATGGATACGAGGTGCGCGACGTTGCC
ATCAGTAAAGACAATGCCCGTTTCGCCTCGTGTGGAGGGGATAAGGTGTT
TTTCCTGTGGGACGTGGCGACGGCGAGGGTGGTTCGGAAATTCACAGGCC
ATGCACATATGATCAATGCGGTGGCTTTCAATGAAGAAGCGAGCGTGGTA
TTGAGTGCGTCCTACGACCGGACCGTCAAGATTTGGGACCTCCGGAGCAA
TAATCGCGACCCCATCCAAACTCTCGACGACTTCAAAGACAGCGTCACCC
GTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAGGACGAGGAGGGGGC
GGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGATGGGTGTCTGAGGAC
CTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGACTGCCAGGAGCCCT
TGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCGTGCTAATGAATGGG
TTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACGGGGGAGATGCTGAA
TAGCTACCAAGGCCACGTCCATCAGGCTTATCCCATCGAGTCTTGCTTTG
ACCACACGGATGCGTTTGTTCTCTCCGGCTCGGAGGACGGGTCGCTTTAT
ATTTGGGACCTGGTGGAGGGAGGGAGGGAGGGAGGGAAAGAGGGCAAGCC
AGCGGCGGTCTTGCGAGAGCATAAGCGAGCGTTGGGTTCCTTGAGCTTTC
ATCCTTCAGAGCCCGTGTTGGTGACAGTGGGATACGATGGAGTGGGATGT
TGTTGGTTTCGGGATTTGTGAGGAGGATGAGCGGGGGGGTTTGACGGATG
TAAATAGAGCGACACGAGCGGTGGCGCATGTGAATCAGCAAGCGTATTTA
TGGGAACAATAATGAACGAAAGATTTAAC
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protein sequence of NO23G01670.1

>NO23G01670.1-protein ID=NO23G01670.1-protein|Name=NO23G01670.1|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MKEMAATPFKLTAGVQRETRHHEHNNRKHKQTLVKSLWAYELSPRSPTCW
MASTQQIARAPPASLPTKVRRNLVGHKGPIFTVRFNAKGTYCMTGGQDKT
LKLWNPFRSSADTNKPGEALLVQSYTGPHGYEVRDVAISKDNARFASCGG
DKVFFLWDVATARVVRKFTGHAHMINAVAFNEEASVVLSASYDRTVKIWD
LRSNNRDPIQTLDDFKDSVTRVCVLEEGGRGGGRGGGGGAREILATSVDG
CLRTYDLRKGMVRVDDCQEPLSSLCLSGDGQCVLMNGLDGVVRLLERGTG
EMLNSYQGHVHQAYPIESCFDHTDAFVLSGSEDGSLYIWDLVEGGREGGK
EGKPAAVLREHKRALGSLSFHPSEPVLVTVGYDGVGCCWFRDL*
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mRNA from alignment at chr23:613283..615827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01670.1 ID=NO23G01670.1|Name=NO23G01670.1|organism=Nannochloropsis oceanica|type=mRNA|length=2545bp|location=Sequence derived from alignment at chr23:613283..615827+ (Nannochloropsis oceanica)
CTCGCGCAACATTTTATTCTGGTTTGCTCATTCGGCAATTTCCAGCTCCA
TTCATGACTTGCCACGATTATCCTTACGCAGCGGGAGAGTTTACCGCGCT
TGCACTATCCTCCAACAACATCTCTGTTCTTGATAGTGACTCCAGTACTA
CAACCGGCTCGGAGAAGAAGGGACTCACAGTCGATGCCGGTGACCTGAGA
ATCGTTTCTTTTCTGGAGCAGGTCAAGGATTTTTTTTTAGGTGCTTGTGC
CCCACATACAACAATGTCCACACCCGCCCAGGCCAGGGAGGGCTGACCTG
CTCAGGATGGGCTTCGATACATTGCCGCAGCTGTGCCTCCTTTAGGTCTT
TCAAACTTACGTTCTGATGAAGCATTTGATCCTACATGGTGCTCTTAAAA
TGTGTCTTGGCCTGCGTATTGTGTGTGTTTCTTGATTTGGTACATGAGAT
TCATGCACACGTTCACGTCGAGAAAGGAAAGACCTCCCCATGAAAGAAAT
GGCCGCCACCCCTTTTAAGCTCACTGCTGGCGTCCAAAGAGAAACACGCC
ACCACGAGCACAACAATCGCAAACACAAGCAAACTCTGGTTAAATCGCTT
TGGGCCTATGAACTCTCCCCAAGAAGCCCGACTTGCTGGTGCGTTTATCG
ACGATGGCTTTAAGCTCAAAGACAGCCTACGCCTTCATTTCTATCCTCCT
CCGATCATGCCCACATGCCCACATTCGCAACCGATAACCCACTCTACACC
ACCCAGGATGGCATCGACACAGCAAATAGCACGTGCTCCACCAGCTTCCC
TACCTACCAAGGTCCGTCGCAACCTTGTGGGTCACAAAGGCCCAATCTTC
ACGGTCCGTTTCAATGGTAAGGCCCTCATCATCCCACGGGCGATTGCCCA
TCCCCTTCTTCTTCCTCTTTCTTCGCAAGCATTAAAAAGGCTAGGGCGAA
ACTTGCGAGGAAAGGGGGGATGATCTGAAAGGATTTTTTCATTAGCGAAT
CCATTAAGTCTCAATACCGCGGTGCTCGCCATCCATTTCCATCCACCCCT
CACTCTTCGCTTCTCCCGTTCCCCCCGACCCCACATTGGACGCATAGCCA
AGGGCACGTATTGCATGACCGGCGGGCAAGACAAGACACTTAAGCTATGG
AACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGGTAAGGGACAATG
GAGCACATGAGTGGCGGATGGATGTGGGGTTTTGAGTCCTTTCCTGTAGG
ACACGCAATTCCAAACCCTCCTACCCTCTTTCTTACTCCCTCCCCCCCTC
TTCAAAGGAGAAGCCTTGTTGGTACAAAGCTACACCGGGCCGCATGGATA
CGAGGTGCGCGACGTTGCCATCAGTAAAGACAATGCCCGTTTCGCCTCGT
GTGGAGGGGATAAGGTGTTTTTCCTGTGGGACGTGGCGACGGCGAGGGTG
GTTCGGAAATTCACAGGCCATGCACATATGATCAATGCGGTGGCTTTCAA
TGAAGAAGCGAGCGTGGTATTGAGTGCGTCCTACGACCGGACCGGTGGGT
TGAGCGGAGGAAGTCGAAGGCAGGATCCCTCGTTTAAATGTTAAAATACG
AGCACATCCAAGTACGCAGTCACACCTTCCACTCTTTCCCTCTTGCTTTC
CCTACCTCCTCTCCTCCCCTCCCTTTCGGCAGTCAAGATTTGGGACCTCC
GGAGCAATAATCGCGACCCCATCCAAACTCTCGACGACTTCAAAGACAGC
GTCACCCGTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAGGACGAGG
AGGGGGCGGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGATGGGTGTC
TGAGGACCTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGACTGCCAG
GAGCCCTTGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCGTGCTAAT
GAATGGGTTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACGGGGGAGA
TGCTGAATAGCTACCAAGGGTAAGAATGACAGGAGGGATGGAGGGGGGGG
TTATGACGCATTCATCGGCTTCAGTGATGATGCGGAGTTTGCTTGGTCAT
TACCGTTCGACAATACCAACGTTTTGATCCTCTCTCTCACTTACACCCGT
CCCTCTCTTCGTCCCTCACTCCCCTTAGCCACGTCCATCAGGCTTATCCC
ATCGAGTCTTGCTTTGACCACACGGATGCGTTTGTTCTCTCCGGCTCGGA
GGACGGGTCGCTTTATATTTGGGACCTGGTGGAGGGAGGGAGGGAGGGAG
GGAAAGAGGGCAAGCCAGCGGCGGTCTTGCGAGAGCATAAGCGAGCGTTG
GGTTCCTTGAGCTTTCATCCTTCAGAGCCCGTGTTGGTGACAGTGGGATA
CGATGGAGTGGGATGTTGTTGGTTTCGGGATTTGTGAGGAGGATGAGCGG
GGGGGTTTGACGGATGTAAATAGAGCGACACGAGCGGTGGCGCATGTGAA
TCAGCAAGCGTATTTATGGGAACAATAATGAACGAAAGATTTAAC
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Coding sequence (CDS) from alignment at chr23:613283..615827+

>NO23G01670.1 ID=NO23G01670.1|Name=NO23G01670.1|organism=Nannochloropsis oceanica|type=CDS|length=1182bp|location=Sequence derived from alignment at chr23:613283..615827+ (Nannochloropsis oceanica)
ATGAAAGAAATGGCCGCCACCCCTTTTAAGCTCACTGCTGGCGTCCAAAG
AGAAACACGCCACCACGAGCACAACAATCGCAAACACAAGCAAACTCTGG
TTAAATCGCTTTGGGCCTATGAACTCTCCCCAAGAAGCCCGACTTGCTGG
ATGGCATCGACACAGCAAATAGCACGTGCTCCACCAGCTTCCCTACCTAC
CAAGGTCCGTCGCAACCTTGTGGGTCACAAAGGCCCAATCTTCACGGTCC
GTTTCAATGCCAAGGGCACGTATTGCATGACCGGCGGGCAAGACAAGACA
CTTAAGCTATGGAACCCTTTTCGCTCAAGCGCCGATACAAATAAGCCAGG
AGAAGCCTTGTTGGTACAAAGCTACACCGGGCCGCATGGATACGAGGTGC
GCGACGTTGCCATCAGTAAAGACAATGCCCGTTTCGCCTCGTGTGGAGGG
GATAAGGTGTTTTTCCTGTGGGACGTGGCGACGGCGAGGGTGGTTCGGAA
ATTCACAGGCCATGCACATATGATCAATGCGGTGGCTTTCAATGAAGAAG
CGAGCGTGGTATTGAGTGCGTCCTACGACCGGACCGTCAAGATTTGGGAC
CTCCGGAGCAATAATCGCGACCCCATCCAAACTCTCGACGACTTCAAAGA
CAGCGTCACCCGTGTCTGTGTGCTGGAGGAGGGAGGGCGGGGAGGAGGAC
GAGGAGGGGGCGGTGGCGCGAGAGAAATCTTGGCCACGTCGGTGGATGGG
TGTCTGAGGACCTATGATTTGAGAAAAGGGATGGTGAGGGTAGATGACTG
CCAGGAGCCCTTGTCGTCGTTGTGTTTGTCGGGGGACGGGCAGTGCGTGC
TAATGAATGGGTTGGATGGGGTGGTGCGCTTGTTGGAGAGGGGAACGGGG
GAGATGCTGAATAGCTACCAAGGCCACGTCCATCAGGCTTATCCCATCGA
GTCTTGCTTTGACCACACGGATGCGTTTGTTCTCTCCGGCTCGGAGGACG
GGTCGCTTTATATTTGGGACCTGGTGGAGGGAGGGAGGGAGGGAGGGAAA
GAGGGCAAGCCAGCGGCGGTCTTGCGAGAGCATAAGCGAGCGTTGGGTTC
CTTGAGCTTTCATCCTTCAGAGCCCGTGTTGGTGACAGTGGGATACGATG
GAGTGGGATGTTGTTGGTTTCGGGATTTGTGA
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Synonyms
Publications