NO23G01580.2, NO23G01580.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01580.2
Unique NameNO23G01580.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1487
Alignment locationchr23:581927..584658 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:581927..584658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO23G01580.2 vs.
Match: EWM27828.1 (amidohydrolase 2 [Nannochloropsis gaditana])

HSP 1 Score: 534.3 bits (1375), Expect = 3.600e-148
Identity = 252/330 (76.36%), Postives = 280/330 (84.85%), Query Frame = 0 
Query:   82 LPLI-RPFFAGIPLLTDMAARLAFMDAHHIDTHVLVPLPWLEIVPGCHSSKEKALEACKRANVEMAAVADAHPTRILGVALLPTGHLK----EKEEGGTEGESEKGRDILMEAYTHAVDVCGLDGVALFVGPLSAPLDHPGFEPLWKQCQEQGLPVWVHPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPDLKVVTHHHGGMIPFFTDRFTTQSQNFDDTESLTLLQDMRKFYCDTATFGVAPLNIRQALEFFEPGRVLFGTDTPMDMAAPGSFIKASKTGVLKSEVSPEIIKKVWSENFWTMMQKRVESK 407
            +PL+    F  IPLLTD++ARLAFMD H ID HVLVPLPWLE+VP CH++KE+ALEACKRAN EMAAV  +H TR LGVALLPTGHLK    E EE G   E + G DILMEAY HAV+ C LDGVALFVGPLS+PLDHPGFE LWK+C+E G+PVW+HPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYP+LKVVTHHHGGMIPFFTDRF TQSQNFDDTE L LL DM+KFYCDTATFG+APLNIRQALEFFE GRVLFGTDTPMDMA PGSF   SK GVL+   + +++ K+W +NFW MM+KR+E K
Sbjct:   46 MPLVFAKLFERIPLLTDVSARLAFMDTHKIDVHVLVPLPWLEVVPACHTNKERALEACKRANNEMAAVVQSHSTRFLGVALLPTGHLKGPGKEDEEEGASHEKD-GMDILMEAYKHAVETCSLDGVALFVGPLSSPLDHPGFEALWKRCEEDGVPVWLHPNRPQFYPDYEAYRGKGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPNLKVVTHHHGGMIPFFTDRFITQSQNFDDTEGLALLDDMKKFYCDTATFGLAPLNIRQALEFFESGRVLFGTDTPMDMAEPGSFTSTSKGGVLQCGAAQDVMDKIWGQNFWVMMEKRLELK 374
The following BLAST results are available for this feature:
BLAST of NO23G01580.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27828.13.600e-14876.36amidohydrolase 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01580NO23G01580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01580.2NO23G01580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01580.2.cds1NO23G01580.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01580.2.cds2NO23G01580.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01580.2.cds3NO23G01580.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01580.2.cds4NO23G01580.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01580.2.cds5NO23G01580.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01580.2.cds6NO23G01580.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01580.2.cds7NO23G01580.2.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01580.2.cds8NO23G01580.2.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01580.2 ID=NO23G01580.2|Name=NO23G01580.2|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp
AAAAACACATGCAGGGCTGCTGACACACCATGGCGACCTCCTCTCCCCCT
CCACCTTCAACTGCTCCGACTACCGGCGTCGTCGATGCCTACACGCATTA
TGCACCCTTAGCCCTCACGAGTTACCTCCAGGATGAATGCAATGACGGGA
AGCCCTTGGTATTTGCCAAGCTCTTTGATCGTAAGTAATTTCGGACGGGG
AGACGAGGAGGGGAGGGGATGGGAGGGAAAGGGGAGAGTGGTTGGAAAGG
ATGAGGAGATGTGTCGGGGCCATAGTTGTGGCGTTTCTTCCTGCCAGTTT
TTGGGTCATCCGTCGTGTCCTGTCCGATATTGGTATTTTTCTATCTCGCG
ATGTACCCTGTTATCCCCGTATTTCCTCCCTTTGATCCGTCCTTTTTTTG
CAGGTATCCCCCTTTTAACTGACATGGCTGCACGACTTGCCTTCATGGAC
GCCCACCACATCGATACCCACGTCCTCGTACCTCTCCCCTGGTTGGAAAT
CGTTCCTGGCTGCCATAGTAGTAAAGAGAAGGCACTTGAGGCCTGCAAGC
GCGCCAACGTCGAAATGGCAGCCGTGGCCGACGCACATCCTACCCGGATT
TTGGGCGTTGCCCTCCTCCCCACCGGGCACCTCAAGGAGAAAGAAGAGGG
AGGGACGGAGGGAGAGAGCGAAAAAGGGAGGGACATTTTGATGGAAGCAT
ACACGCACGCGGTAGACGTGTGTGGGTTGGACGGGGTGGCACTCTTTGTA
GGCCCCCTCTCCGCCCCTCTCGACCACCCCGGCTTCGAGCCTCTGTGGAA
GCAGTGCCAAGAGCAGGGCCTGCCTGTCTGGGTCCACCCCAACCGACCGC
AGTTCTATCCCGACTACGAGGCCTACAGGGGCAAGGGTGGAAGCCTCCAC
CAAATATGGAACACATTAGGCTGGGTTTACGACACGAGCGTGGCGATGGT
CCACATGGTCATGGCCGGCGTCTTCCAACGCTACCCGGATTTGAAGGTCG
TGACCCACCACCACGGGGGCATGATTCCCTTCTTCACAGACCGCTTCACC
ACCCAAAGCCAGAACTTCGACGACACAGAGAGCCTGACCCTGCTCCAGGA
CATGAGAAAATTCTACTGCGACACTGCCACCTTTGGCGTGGCCCCGCTCA
ACATTCGACAGGCCCTCGAGTTTTTCGAGCCCGGTCGTGTCTTGTTCGGG
ACTGACACTCCTATGGACATGGCAGCCCCCGGGTCTTTCATCAAGGCGAG
CAAGACGGGAGTGCTGAAGAGTGAGGTCTCGCCCGAGATAATTAAAAAAG
TTTGGAGTGAAAACTTCTGGACCATGATGCAGAAACGCGTGGAAAGCAAA
GGAGGGATAGGGGGAGGGAAGGCAGGAGGGGGAAAGAAAAGAAAAGAAAG
AGCTGATAGTGAGGAGGCAAGTTTGAGTCACCCATAAATCGGCTTGTGAA
GGTGAAAAAGAAACAAGTAATCGAAGACACGCGCTCA
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protein sequence of NO23G01580.2

>NO23G01580.2-protein ID=NO23G01580.2-protein|Name=NO23G01580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=435bp
MNAMTGSPWYLPSSLIVSNFGRGDEEGRGWEGKGRVVGKDEEMCRGHSCG
VSSCQFLGHPSCPVRYWYFSISRCTLLSPYFLPLIRPFFAGIPLLTDMAA
RLAFMDAHHIDTHVLVPLPWLEIVPGCHSSKEKALEACKRANVEMAAVAD
AHPTRILGVALLPTGHLKEKEEGGTEGESEKGRDILMEAYTHAVDVCGLD
GVALFVGPLSAPLDHPGFEPLWKQCQEQGLPVWVHPNRPQFYPDYEAYRG
KGGSLHQIWNTLGWVYDTSVAMVHMVMAGVFQRYPDLKVVTHHHGGMIPF
FTDRFTTQSQNFDDTESLTLLQDMRKFYCDTATFGVAPLNIRQALEFFEP
GRVLFGTDTPMDMAAPGSFIKASKTGVLKSEVSPEIIKKVWSENFWTMMQ
KRVESKGGIGGGKAGGGKKRKERADSEEASLSHP*
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mRNA from alignment at chr23:581927..584658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01580.2 ID=NO23G01580.2|Name=NO23G01580.2|organism=Nannochloropsis oceanica|type=mRNA|length=2732bp|location=Sequence derived from alignment at chr23:581927..584658+ (Nannochloropsis oceanica)
AAAAACACATGCAGGGCTGCTGACACACCATGGCGACCTCCTCTCCCCCT
CCACCTTCAACTGCTCCGACTACCGGCGTCGTCGATGCCTACACGCATTA
TGCACCCTTAGCCCTCACGAGTTACCTCCAGGATGAATGCAATGACGGGA
AGCCCTTGGTATTTGCCAAGCTCTTTGATCGTAAGTAATTTCGGACGGGG
AGACGAGGAGGGGAGGGGATGGGAGGGAAAGGGGAGAGTGGTTGGAAAGG
ATGAGGAGATGTGTCGGGGCCATAGTTGTGGCGTTTCTTCCTGCCAGTTT
TTGGGTCATCCGTCGTGTCCTGTCCGATATTGGTATTTTTCTATCTCGCG
ATGTACCCTGTTATCCCCGTATTTCCTCCCTTTGATCCGTCCTTTTTTTG
CAGGTATCCCCCTTTTAACTGACATGGCTGCACGACTTGCCTTCATGGAC
GCCCACCACATCGATACCCACGTCCTCGTACCTCTCCCCTGGTTGGAAAT
CGTTCCTGGCTGCCATAGTAGTAAAGAGAAGTAAAAAGGGAGGGAGGGGT
AGAGAGGGAGGGAGAAGGGTTAGGGAGAGGAAAAGATGAAAGGCATCATG
AAATATAGGCGGTTGCCAACAACACACAGGCCTACTTAATCCTTCCCTCC
CCCTCGTTCCCTCCCTCCCTCCTTTCCAGGGCACTTGAGGCCTGCAAGCG
CGCCAACGTCGAAATGGCAGCCGTGGCCGACGCACATCCTACCCGGATTT
TGGGCGTTGCCCTCCTCCCCACCGGGCACCTCAAGGAGAAAGAAGAGGGA
GGGACGGAGGGAGAGAGCGAAAAAGGGAGGGACATTTTGATGGAAGCATA
CACGCACGCGGTAGACGTGTGTGGGTTGGACGGGGTGGCACTCTTTGTAG
TAAGTGGGCGCACCCCTCCCTCCTTCCCTCCTTCCTTCCCTCCCTCCCTC
CCTCACTCCCTCTTTCCCTCCCTCCCTCTTTCTCTCCTTCAATTCCCTCA
CATTCTCGCGCCTAACCGTTCTTCCCTCCCTCTCTTTCCCCATTCCTAGG
GCCCCCTCTCCGCCCCTCTCGACCACCCCGGCTTCGAGCCTCTGTGGAAG
CAGTGCCAAGAGCAGGGCCTGCCTGTCTGGGTCCACCCCAACCGACCGCA
GGTACTTACGGAGGGAGGGAGGGGGGGAGGCAGGGAGAGAATCGGATCGA
GTCCAGTCAAAGAAAGTGATTCTTATTTTCCTCTCATGTCTACTCCTCCC
TCCATCCCTCGCTCCCTCTCTCGCGGCCTCCCTCCCTTCCTAGTTCTATC
CCGACTACGAGGCCTACAGGGGCAAGGGTGGAAGCCTCCACCAAATATGG
AACACATTAGGTAAGGGAGAGAGGGAGGGAGAGAGGGAGGGAGGGACAGG
AGAATGGATCGGAGTAATGCTCCCATCTGCTCATGTCCCTCCCTCCCTCC
CTCTCTCCCTCCCTCCCTTCTCTCCTCCCCTCCAGGCTGGGTTTACGACA
CGAGCGTGGCGATGGTCCACATGGTCATGGCCGGCGTCTTCCAACGCTAC
CCGGATTTGAAGGTAGGAAGGGAAGGAGGGAGGGAAGGAGGGAGAGAGGG
AGGGGCTTCGAAAACACATTTGTCAGTATTGTTTCCCTCTCCCTCCCTCC
CTCCCTCCCTCCTTTAGGTCGTGACCCATCACCACGGGGGCATGAGTCAT
ATTTGTCATTACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCTAGGTCGTAACCCTCCACCACGGGGGCATGAGT
CATTTTTGTCACTACCATCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTACCCTCCCTCCTCAAGGTCGTGA
CCCACCACCACGGGGGCATGATTCCCTTCTTCACAGACCGCTTCACCACC
CAAAGCCAGAACTTCGACGACACAGAGAGCCTGACCCTGCTCCAGGACAT
GAGAAAATTCTACTGCGACACTGCCACCTTTGGCGTGGCCCCGCTCAACA
TTCGACAGGTGCCCCTCTATCCCTCCTTTCCTCTTTCCCTCCCTCCCCTC
CTCTCCTCTTCCTCCCTTCTTCCTCCTCCTACTATTTTAGAAAATCTTTT
TCATTTTTCTCCCACTCACCCTCCCTCCCTTCGCCCCTCCCTCCCTCCCT
CCCCCAGGCCCTCGAGTTTTTCGAGCCCGGTCGTGTCTTGTTCGGGACTG
ACACTCCTATGGACATGGCAGCCCCCGGGTCTTTCATCAAGGCGAGCAAG
ACGGGAGTGCTGAAGAGTGGTAAAAAGGGAGGGAGGGGGGGAGGGAGGGA
GGGAGGGAGGGGAAAGTGTGGAAAAATCACCAATAAGGTTCCTGTCTAAA
CGTCTCCACAACAAGGAGTCGAATCAAGGAAAAGCGGGAGGAAGGGAAGG
AAGGAAGGAAGGAAGCAAGGAAGGAGACGCATGCTTAACCAGCCCCAACT
ACTCGATACATCCAACAGAGGTCTCGCCCGAGATAATTAAAAAAGTTTGG
AGTGAAAACTTCTGGACCATGATGCAGAAACGCGTGGAAAGCAAAGGAGG
GATAGGGGGAGGGAAGGCAGGAGGGGGAAAGAAAAGAAAAGAAAGAGCTG
ATAGTGAGGAGGCAAGTTTGAGTCACCCATAAATCGGCTTGTGAAGGTGA
AAAAGAAACAAGTAATCGAAGACACGCGCTCA
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Coding sequence (CDS) from alignment at chr23:581927..584658+

>NO23G01580.2 ID=NO23G01580.2|Name=NO23G01580.2|organism=Nannochloropsis oceanica|type=CDS|length=1305bp|location=Sequence derived from alignment at chr23:581927..584658+ (Nannochloropsis oceanica)
ATGAATGCAATGACGGGAAGCCCTTGGTATTTGCCAAGCTCTTTGATCGT
AAGTAATTTCGGACGGGGAGACGAGGAGGGGAGGGGATGGGAGGGAAAGG
GGAGAGTGGTTGGAAAGGATGAGGAGATGTGTCGGGGCCATAGTTGTGGC
GTTTCTTCCTGCCAGTTTTTGGGTCATCCGTCGTGTCCTGTCCGATATTG
GTATTTTTCTATCTCGCGATGTACCCTGTTATCCCCGTATTTCCTCCCTT
TGATCCGTCCTTTTTTTGCAGGTATCCCCCTTTTAACTGACATGGCTGCA
CGACTTGCCTTCATGGACGCCCACCACATCGATACCCACGTCCTCGTACC
TCTCCCCTGGTTGGAAATCGTTCCTGGCTGCCATAGTAGTAAAGAGAAGG
CACTTGAGGCCTGCAAGCGCGCCAACGTCGAAATGGCAGCCGTGGCCGAC
GCACATCCTACCCGGATTTTGGGCGTTGCCCTCCTCCCCACCGGGCACCT
CAAGGAGAAAGAAGAGGGAGGGACGGAGGGAGAGAGCGAAAAAGGGAGGG
ACATTTTGATGGAAGCATACACGCACGCGGTAGACGTGTGTGGGTTGGAC
GGGGTGGCACTCTTTGTAGGCCCCCTCTCCGCCCCTCTCGACCACCCCGG
CTTCGAGCCTCTGTGGAAGCAGTGCCAAGAGCAGGGCCTGCCTGTCTGGG
TCCACCCCAACCGACCGCAGTTCTATCCCGACTACGAGGCCTACAGGGGC
AAGGGTGGAAGCCTCCACCAAATATGGAACACATTAGGCTGGGTTTACGA
CACGAGCGTGGCGATGGTCCACATGGTCATGGCCGGCGTCTTCCAACGCT
ACCCGGATTTGAAGGTCGTGACCCACCACCACGGGGGCATGATTCCCTTC
TTCACAGACCGCTTCACCACCCAAAGCCAGAACTTCGACGACACAGAGAG
CCTGACCCTGCTCCAGGACATGAGAAAATTCTACTGCGACACTGCCACCT
TTGGCGTGGCCCCGCTCAACATTCGACAGGCCCTCGAGTTTTTCGAGCCC
GGTCGTGTCTTGTTCGGGACTGACACTCCTATGGACATGGCAGCCCCCGG
GTCTTTCATCAAGGCGAGCAAGACGGGAGTGCTGAAGAGTGAGGTCTCGC
CCGAGATAATTAAAAAAGTTTGGAGTGAAAACTTCTGGACCATGATGCAG
AAACGCGTGGAAAGCAAAGGAGGGATAGGGGGAGGGAAGGCAGGAGGGGG
AAAGAAAAGAAAAGAAAGAGCTGATAGTGAGGAGGCAAGTTTGAGTCACC
CATAA
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Synonyms
Publications