NO23G01550.2, NO23G01550.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01550.2
Unique NameNO23G01550.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1400
Alignment locationchr23:571815..574410 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:571815..574410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO23G01550.2 vs.
Match: EWM27834.1 (n-alpha-acetyltransferase catalytic subunit [Nannochloropsis gaditana])

HSP 1 Score: 179.5 bits (454), Expect = 1.600e-41
Identity = 97/159 (61.01%), Postives = 115/159 (72.33%), Query Frame = 0
Query:   34 SVGIAAPFLKYDRKGLDVTIEFKSKLSKEEVTWAFDAVKETMEETYDNSGYGWDDEDKLAQLTEPEARFLVIREALFTEEKDENTAQQEHEGENKGKVL---ENEKETPSHSTGKKKTYSGRDKKGKKKGALVGIVHFRFSVQGDFVDKMAGAPSLILW 190
            SVGIAAPF KYDRKG+D  IEFK+KL+KEEVTWAFD +K++MEE YD SGYGWDDEDKLAQLTEPEARFLVIRE+     + E T         +  V    E+ K+    ++G     + R K  +KKG ++G+VHFRFSVQGDF DKMAGAPSLILW
Sbjct:   61 SVGIAAPFFKYDRKGVDANIEFKTKLNKEEVTWAFDNIKDSMEEIYDASGYGWDDEDKLAQLTEPEARFLVIRES-----RPEGTVTSPRFALKERNVYDQDEDGKKGEKQASGGDMKQTTRMKMARKKGQILGVVHFRFSVQGDFTDKMAGAPSLILW 214          
The following BLAST results are available for this feature:
BLAST of NO23G01550.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27834.11.600e-4161.01n-alpha-acetyltransferase catalytic subunit [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01550NO23G01550Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01550.2NO23G01550.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01550.2.cds1NO23G01550.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01550.2.cds2NO23G01550.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01550.2.cds3NO23G01550.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01550.2.cds4NO23G01550.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01550.2.cds5NO23G01550.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01550.2.cds6NO23G01550.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01550.2 ID=NO23G01550.2|Name=NO23G01550.2|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
CAGGCTGTACGATATTTGCCGTCTTGGCGCCCAATCTGCCTTTACAAATT
ACGCGACGACCTTTTGCATACCAAAGACCTTCCCAGCACTCCCACAATTT
GTACAATACAGCCAACCAAGCACACACTTAAGGCATCGAGCACCATGAGC
ATGAAGGGCAAAGGCGGCAAAGGGGGTAAGGCCAAGGGTGGGGGCAAGAG
CACGGCAGGCGGCCAGACTATTGAGATCAAGCGGAGCAAGGACCGCCTGA
CGGCCTCCATCAACGAGTCCATCCTCACCCTCCGCCAAGCCCTCTTTGAT
GACCTGGGACAAAACAAGGATGTGGTACGTGCATGCTCCATCTCGCTTCC
TGCCCGCCTGCTCTCACAAACGTAAACAGTGTGTCACTCTCCCCTCTCTC
CTTCCTTCCCTTGCCTTCTCCCGTCTTCCAGTCCGTGGGGATCGCTGCCC
CCTTCCTCAAATACGACCGGAAGGGCTTGGACGTCACCATCGAGTTCAAG
AGCAAGCTTAGCAAGGAGGAAGTGACCTGGGCTTTTGATGCCGTGAAGGA
GACGATGGAAGAGACTTACGACAACTCGGGCTACGGATGGGACGATGAAG
ACAAGCTTGCACAGCTCACTGAGCCGGAGGCACGTTTCCTCGTCATCCGG
GAGGCTCTCTTCACCGAAGAGAAGGACGAGAACACTGCCCAGCAGGAGCA
CGAGGGCGAGAACAAGGGAAAGGTGCTGGAAAATGAAAAGGAGACGCCGA
GCCATAGTACGGGCAAGAAGAAGACATACAGCGGCAGGGACAAGAAGGGC
AAGAAAAAGGGCGCCTTGGTAGGCATCGTCCACTTCCGGTTCTCGGTCCA
GGGAGATTTCGTGGACAAGATGGCCGGCGCCCCGTCCCTGATTCTTTGGG
ATATCGCCATTTTGGCTGACGCACGTCGCAAGGGGTTGGGAAAGCATTGC
CTCCTCCTTTTGGAGCTCATTGCGCGAAAACAGGCCATGCATGCCATTTG
CGTGCCGGTCCAACTGTCCGATCAAGCCACCCTGGCCTGGGTGACCAAGG
GAGGGAAGGGATACGTGGCTATGGAGGACGAAGTCAAGGAGAGCTTGGAT
TTTGAGGCGGAGGAGGAAGGATTTGAGGTATATATCAAGACGCTCCTGGC
CCCGCCTCCCCTCGCTGCTGTTGCCCCGACTCTTGCGCCTGCAGTGCCGG
TTGTGGCCAAGAATGAAGGGGAGGAGAAGGGGAAGAAAGAGCAGATGGAA
AAGGATAACTAATGAAAGGCAAAAGAGGAAGGGGGATGGAGGCGGTTACC
AAAAAGATGAAAAGAGTATAAAAAGTTAGAGAAATTAAAAAAAGCTGGGG
ATAAAAGTAGAAAAATTGAAAAGTAAAACTAATAAACAATTGATCAGCCC
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protein sequence of NO23G01550.2

>NO23G01550.2-protein ID=NO23G01550.2-protein|Name=NO23G01550.2|organism=Nannochloropsis oceanica|type=polypeptide|length=310bp
MLHLASCPPALTNVNSVSLSPLSFLPLPSPVFQSVGIAAPFLKYDRKGLD
VTIEFKSKLSKEEVTWAFDAVKETMEETYDNSGYGWDDEDKLAQLTEPEA
RFLVIREALFTEEKDENTAQQEHEGENKGKVLENEKETPSHSTGKKKTYS
GRDKKGKKKGALVGIVHFRFSVQGDFVDKMAGAPSLILWDIAILADARRK
GLGKHCLLLLELIARKQAMHAICVPVQLSDQATLAWVTKGGKGYVAMEDE
VKESLDFEAEEEGFEVYIKTLLAPPPLAAVAPTLAPAVPVVAKNEGEEKG
KKEQMEKDN*
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mRNA from alignment at chr23:571815..574410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01550.2 ID=NO23G01550.2|Name=NO23G01550.2|organism=Nannochloropsis oceanica|type=mRNA|length=2596bp|location=Sequence derived from alignment at chr23:571815..574410- (Nannochloropsis oceanica)
CAGGCTGTACGATATTTGCCGTCTTGGCGCCCAATCTGCCTTTACAAATT ACGCGACGACCTTTTGCATACCAAAGACCTTCCCAGCACTCCCACAATTT GTACAATACAGCCAACCAAGCACACACTTAAGGCATCGAGCACCATGAGC ATGAAGGGTAAGCCCACTCTCCCTGCCATTTCCCCGCTTTTTCCCTCCCT TATTTTTACCCTCCCGAATTTCCACCCCCTACTTACTGTGAAGGCAAAGG CGGCAAAGGGGGTAAGGCCAAGGGTGGGGGCAAGAGCACGGCAGGCGGCC AGACTATTGAGATCAAGCGGAGCAAGGACCGCCTGACGGTACGTATATAC AAATTTGGGGGGGGGGGAATGGAAATGGGGCGGCCATCGGGGAGAGGCGG ATGTTTAGAGTGAAAATAGAACGCAGATCAAGGGCAACTGGTCTCTTGGC TGGCAGTTAAATAGCGTTTGCACCAGCCAATCTTCGTCCGATCAGGTTCG GGTAGATTCCTCGATTCCTCACTCTCCCTTCCGCAAAATCTGACCTCTCT TTCGTCCATCTCCTTGCTTCTCTTCCTCCCCAGGCCTCCATCAACGAGTC CATCCTCACCCTCCGCCAAGCCCTCTTTGATGACCTGGGACAAAACAAGG ATGTGGTACGTGCATGCTCCATCTCGCTTCCTGCCCGCCTGCTCTCACAA ACGTAAACAGTGTGTCACTCTCCCCTCTCTCCTTCCTTCCCTTGCCTTCT CCCGTCTTCCAGTCCGTGGGGATCGCTGCCCCCTTCCTCAAATACGACCG GAAGGGCTTGGACGTCACCATCGAGTTCAAGAGCAAGCTTAGCAAGGAGG AAGGTGAGAAGGGAGGGATGGAGGGTAGAGGAGGGGGGGGCAATGAAGAA TTTTTCTTCCGAGAATGACTGCGTTCATCCCGCCTTCCACTCCCTCCCTC CCTTTCTCCCTCCCTCCCTAGTGACCTGGGCTTTTGATGCCGTGAAGGAG ACGATGGAAGAGACTTACGACAACTCGGGCTACGGATGGGACGATGAAGA CAAGCTTGCACAGCTCACTGAGCCGGAGGCACGGTGGGTTCCCTTCCTCC TTCCTTTCCTTCCTCCCTCTTTGAGAGAAGCAGACCGGAAGCATGTCGTG CAGTCCCTAATGTCCCTCTCTTTTTCTCCTTCCCCTCTGTCTTTCCTCCC TCCACTCAGTTTCCTCGTCATCCGGGAGGCTCTCTTCACCGAAGAGAAGG ACGAGAACACTGCCCAGCAGGAGCACGAGGGCGAGAACAAGGGAAAGGTG CTGGAAAATGAAAAGGAGACGCCGAGCCATAGTACGGGCAAGAAGAAGAC ATACAGCGGCAGGGACAAGAAGGGCAAGAAAAAGGGCGCCTTGGTAGGCA TCGTCCACTTCCGGTGCGTATTTGAATGGCCCCGCCCGCCCTCCCTCCCT CCCTCCCTCCCTCCCTCCACCTGTACACCTCTCCATCCCTTATTTTTTCC ACCTCACTTCCCTTTCAACCTTTATCTCTTCTTCCATGCTTTTTCCAAGC AACACATCTAAACGATCTCCTTCTCTCCTTCCCTTTTTCCCCACCTCATC CTTTTTCTTCTTTCCCCCTGCCTCCTTAGGTTCTCGGTCCAGGGAGATTT CGTGGACAAGATGGCCGGCGCCCCGTCCCTGATTCTTTGGGTAAGCAGGG AGGGAGGGTTAGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGAGA GGCTGGATCTGACCTGACGCCGGCGAAATGAGTGATTTCAAACGTGCTTC GTGATCTTACACCACCTCCCTTCCTTGGGCTCTCTTTTCTCTCTCCTTCT CTTCCTTTCTTTGTCCACACAGGATATCGCCATTTTGGCTGACGCACGTC GCAAGGGGTTGGGAAAGCATTGCCTCCTCCTTTTGGAGCTCATTGCGCGA AAACAGGCCATGCATGCCATTTGCGTGCCGGTAAGGAGGAAGGGAGGGAA GGACGAGGGAAAAGGGAGAAGGAAGGAAAGGAAGGAGGAAGAGAGTGGCA GAGATAGGAAAGGGGTGAAAAGGCTTCCTATAGGAAGCAAAGGGGGGACC GAAAGCTGGCCATAGGTATATATCTAACCTCTCCCTCCATTCTTTCCACC CTTCCCTCCCCTCCCCTCCTTCCCCTTCCTTCTTCCTCTTCTTTTCTCTC CAGGTCCAACTGTCCGATCAAGCCACCCTGGCCTGGGTGACCAAGGGAGG GAAGGGATACGTGGCTATGGAGGACGAAGTCAAGGAGAGCTTGGATTTTG AGGCGGAGGAGGAAGGATTTGAGGTATATATCAAGACGCTCCTGGCCCCG CCTCCCCTCGCTGCTGTTGCCCCGACTCTTGCGCCTGCAGTGCCGGTTGT GGCCAAGAATGAAGGGGAGGAGAAGGGGAAGAAAGAGCAGATGGAAAAGG ATAACTAATGAAAGGCAAAAGAGGAAGGGGGATGGAGGCGGTTACCAAAA AGATGAAAAGAGTATAAAAAGTTAGAGAAATTAAAAAAAGCTGGGGATAA AAGTAGAAAAATTGAAAAGTAAAACTAATAAACAATTGATCAGCCC
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Coding sequence (CDS) from alignment at chr23:571815..574410-

>NO23G01550.2 ID=NO23G01550.2|Name=NO23G01550.2|organism=Nannochloropsis oceanica|type=CDS|length=930bp|location=Sequence derived from alignment at chr23:571815..574410- (Nannochloropsis oceanica)
ATGCTCCATCTCGCTTCCTGCCCGCCTGCTCTCACAAACGTAAACAGTGT
GTCACTCTCCCCTCTCTCCTTCCTTCCCTTGCCTTCTCCCGTCTTCCAGT
CCGTGGGGATCGCTGCCCCCTTCCTCAAATACGACCGGAAGGGCTTGGAC
GTCACCATCGAGTTCAAGAGCAAGCTTAGCAAGGAGGAAGTGACCTGGGC
TTTTGATGCCGTGAAGGAGACGATGGAAGAGACTTACGACAACTCGGGCT
ACGGATGGGACGATGAAGACAAGCTTGCACAGCTCACTGAGCCGGAGGCA
CGTTTCCTCGTCATCCGGGAGGCTCTCTTCACCGAAGAGAAGGACGAGAA
CACTGCCCAGCAGGAGCACGAGGGCGAGAACAAGGGAAAGGTGCTGGAAA
ATGAAAAGGAGACGCCGAGCCATAGTACGGGCAAGAAGAAGACATACAGC
GGCAGGGACAAGAAGGGCAAGAAAAAGGGCGCCTTGGTAGGCATCGTCCA
CTTCCGGTTCTCGGTCCAGGGAGATTTCGTGGACAAGATGGCCGGCGCCC
CGTCCCTGATTCTTTGGGATATCGCCATTTTGGCTGACGCACGTCGCAAG
GGGTTGGGAAAGCATTGCCTCCTCCTTTTGGAGCTCATTGCGCGAAAACA
GGCCATGCATGCCATTTGCGTGCCGGTCCAACTGTCCGATCAAGCCACCC
TGGCCTGGGTGACCAAGGGAGGGAAGGGATACGTGGCTATGGAGGACGAA
GTCAAGGAGAGCTTGGATTTTGAGGCGGAGGAGGAAGGATTTGAGGTATA
TATCAAGACGCTCCTGGCCCCGCCTCCCCTCGCTGCTGTTGCCCCGACTC
TTGCGCCTGCAGTGCCGGTTGTGGCCAAGAATGAAGGGGAGGAGAAGGGG
AAGAAAGAGCAGATGGAAAAGGATAACTAA
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Synonyms
Publications