NO23G01530.1, NO23G01530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01530.1
Unique NameNO23G01530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1362
Alignment locationchr23:564433..566943 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:564433..566943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01530.1 vs.
Match: XP_005852631.1 (hypothetical protein NGA_0727300, partial [Nannochloropsis gaditana CCMP526]; EKU23201.1 hypothetical protein NGA_0727300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 453.0 bits (1164), Expect = 8.400e-124
Identity = 225/318 (70.75%), Postives = 255/318 (80.19%), Query Frame = 0 
Query:   11 PPTPPLISPPSPPTLP-PSPLHLPHMTDHYQGIIIETEGLPSDPCVFDRQLKASLTAWKAEHKRGIWLKVPLSLASHVPVAAAQGFEFHHAERGYVMMTRWLATDTPCTLPPGPTHQVGVGALVLDKSGKNILAVQEKSGPLKGTGVWKMPTGLLDVGEDIGTGAEREVKEETGVDARFRSLVAFRHAHGFAFGKSDLFFVARLEVEEGSSIQPCPREIAVCEWVPLSLFLSQPRFLSSPLYACVYDLCQDVLEEGGREGGREGGALTAIVGTRLEMGFKPGTAWLYHTSQWHHEKH-GKGGGGGKVGNGSNGIKDEG 327
            P +  L SPP+  + P PSPLH  H  D Y GIII+ + LP DPC+F + L  SL AW+ +H+RGIWLK+PL+LASHVPVAA+ GF FHHAE+ YVMMT WL    PCTLPPGPTHQVGVGALVLDK GKNILAVQEKSGPL+GTGVWKMPTGLLDVGEDIG GAEREVKEETGV ARF+ L+AFRHAH FAFGKSDLFF+ARLEVE+ SS+QPCP EIA C+WVPLSLFLSQPRFL+SPLYACVYDLC+D L E   EG  +   +TAI+GT+LE+GFKPG AWLYHTS+WHHEKH GKG G   +  G    K  G
Sbjct:   34 PASSSLPSPPTSSSFPSPSPLH--HTPDPYDGIIIDPQQLPKDPCIFAQHLTESLAAWRLQHRRGIWLKLPLTLASHVPVAASSGFVFHHAEQDYVMMTHWLEEGKPCTLPPGPTHQVGVGALVLDKGGKNILAVQEKSGPLRGTGVWKMPTGLLDVGEDIGAGAEREVKEETGVSARFKHLIAFRHAHAFAFGKSDLFFLARLEVEDDSSLQPCPHEIAACDWVPLSLFLSQPRFLASPLYACVYDLCRDALPE--NEG--KARPVTAIMGTQLELGFKPGAAWLYHTSEWHHEKHGGKGEGEDGLEEGKGAKKGAG 345
The following BLAST results are available for this feature:
BLAST of NO23G01530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852631.18.400e-12470.75hypothetical protein NGA_0727300, partial [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01530NO23G01530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01530.1NO23G01530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01530.1.cds1NO23G01530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01530.1.cds2NO23G01530.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01530.1.cds3NO23G01530.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01530.1.cds4NO23G01530.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01530.1.cds5NO23G01530.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01530.1.cds6NO23G01530.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01530.1 ID=NO23G01530.1|Name=NO23G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
ACAGCTTCCACTGCAAGCCCCCAGCGCAACGTAATCATTCCTTGTCTTCC
GTCACCCACTCCCCGCCCCCCCTTCCGCCGTGCTGCCTTCATCAGCCTTC
TCCCAAGCGTCATCATTTTCTTGTTTCAGCTTTCTTCCACCACCGCCTTT
CGGCTACCCCTCTTCTTCGCCTTCCCGCCCCTCCGGCCCCTTCTGTTCCG
TCCCTCCCACGGCACCCTCCGCAGTAGCCTGCCTCGACTTGTAGTCCTCA
TGTCCTCGTCGTCGTCGTCGTCGCCTCCCCCTCCCACTCCTCCTCTGATT
TCCCCTCCGTCCCCTCCCACCCTACCACCGAGTCCCCTTCATTTGCCGCA
CATGACAGACCATTATCAAGGCATTATTATTGAGACTGAAGGACTCCCCT
CTGATCCTTGTGTCTTCGACAGGCAGTTGAAGGCGTCGCTAACTGCATGG
AAAGCAGAGCACAAACGCGGCATTTGGCTCAAGGTTCCCCTGTCTCTCGC
CTCCCACGTGCCTGTGGCAGCTGCCCAGGGGTTTGAATTCCACCACGCCG
AGCGAGGGTACGTGATGATGACCCGCTGGCTGGCGACCGATACGCCTTGC
ACACTCCCGCCCGGGCCCACCCACCAGGTGGGCGTGGGTGCCTTGGTGCT
CGACAAGAGTGGGAAGAACATTTTAGCCGTGCAGGAGAAAAGTGGGCCAT
TGAAGGGGACGGGCGTTTGGAAGATGCCCACGGGCTTGCTGGACGTGGGG
GAGGACATTGGCACCGGCGCCGAACGTGAGGTGAAGGAGGAGACGGGGGT
AGACGCGCGGTTTCGGAGCCTGGTGGCCTTTCGGCATGCTCACGGCTTTG
CCTTTGGTAAGAGTGACTTGTTCTTTGTGGCACGCCTCGAAGTGGAGGAG
GGGAGCAGCATTCAACCCTGTCCGCGTGAGATCGCGGTCTGTGAGTGGGT
GCCTCTGTCCCTGTTCCTCTCCCAGCCCCGCTTTCTCTCCTCTCCTCTCT
ACGCTTGTGTCTATGATCTATGCCAGGACGTGTTGGAGGAGGGCGGGAGG
GAGGGCGGGAGGGAGGGCGGGGCCCTGACGGCGATTGTGGGGACGCGTCT
GGAGATGGGGTTTAAGCCGGGGACGGCCTGGTTGTATCACACATCACAAT
GGCACCATGAGAAGCATGGAAAAGGAGGAGGGGGCGGGAAGGTTGGGAAT
GGAAGCAACGGAATAAAGGATGAGGGTGTGATGGCTAGGGTCCGTGAACC
GGTGGAAGGCGGGGCGGGTGGATTTTAAGAGAACGATTTACATTGAAGAT
ATAAAAGTAGCTATGTATACGGATAGGAAAAGTGGACAGGGTGAGCTCTC
GATGAAATTAGT
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protein sequence of NO23G01530.1

>NO23G01530.1-protein ID=NO23G01530.1-protein|Name=NO23G01530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MSSSSSSSPPPPTPPLISPPSPPTLPPSPLHLPHMTDHYQGIIIETEGLP
SDPCVFDRQLKASLTAWKAEHKRGIWLKVPLSLASHVPVAAAQGFEFHHA
ERGYVMMTRWLATDTPCTLPPGPTHQVGVGALVLDKSGKNILAVQEKSGP
LKGTGVWKMPTGLLDVGEDIGTGAEREVKEETGVDARFRSLVAFRHAHGF
AFGKSDLFFVARLEVEEGSSIQPCPREIAVCEWVPLSLFLSQPRFLSSPL
YACVYDLCQDVLEEGGREGGREGGALTAIVGTRLEMGFKPGTAWLYHTSQ
WHHEKHGKGGGGGKVGNGSNGIKDEGVMARVREPVEGGAGGF*
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mRNA from alignment at chr23:564433..566943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01530.1 ID=NO23G01530.1|Name=NO23G01530.1|organism=Nannochloropsis oceanica|type=mRNA|length=2511bp|location=Sequence derived from alignment at chr23:564433..566943- (Nannochloropsis oceanica)
ACAGCTTCCACTGCAAGCCCCCAGCGCAACGTAATCATTCCTTGTCTTCC
GTCACCCACTCCCCGCCCCCCCTTCCGCCGTGCTGCCTTCATCAGCCTTC
TCCCAAGCGTCATCATTTTCTTGTTTCAGCTTTCTTCCACCACCGCCTTT
CGGCTACCCCTCTTCTTCGCCTTCCCGCCCCTCCGGCCCCTTCTGTTCCG
TCCCTCCCACGGCACCCTCCGCAGTAGCCTGCCTCGACTTGTAGTCCTCA
TGTCCTCGTCGTCGTCGTCGTCGCCTCCCCCTCCCACTCCTCCTCTGATT
TCCCCTCCGTCCCCTCCCACCCTACCACCGAGTCCCCTTCATTTGCCGCA
CATGACAGACCATTATCAAGGCATTATTATTGAGACTGAAGGACTCCCCT
CTGATCCTTGTGTCTTCGACAGGCAGTTGAAGGCGTCGCTAACTGGTAAG
GTCTTTTAAATGAATGTGGAGGAGCATCGGGTCTTTGCCTGCAGCGAGGG
AGTTATCAAGCTCCCTCTTGTCCGACAATTACCATCGATAGCTTAATCTG
CAGACACCTCCCTTCTTCATCCCCTTTCCCTCGCTCCTCTTCCCCCTCTT
CGTCTTTCTGCCCCGCCAATTCTCGCTTTTTCTTCCCTCCCCTTCATTCC
TCCCTTCCTCCCCTCAGCATGGAAAGCAGAGCACAAACGCGGCATTTGGC
TCAAGGTTCCCCTGTCTCTCGCCTCCCACGTGCCTGTGGCAGCTGCCCAG
GGGTTTGAATTCCACCACGCCGAGCGAGGGTACGTGATGATGACCCGCTG
GCTGGCGACCGATACGCCTTGCACACTCCCGCCCGGGCCCACCCACCAGG
TGAGAACTTTCCTCCATCCCTCAGCCCCTCCATCCCTCTTACCCTACTAC
CATCCCTCCCTCCCTCTCTCCCCCCTCCTCATGCTCTAGGTACGAACTCC
TTCCCTCTTTCCCTCTCCCCTCCCTCCCCCCCTCCGCTTTTTCTCCTTCC
CTCCTTGCCCATTTTCGGGAGACTCCCTCTTTTTGTCGTCTCCTTTCTCG
TCTTATTTCACCTTTCCATCCGCCCGCCCTCCCTACCTCACAGGTGGGCG
TGGGTGCCTTGGTGCTCGACAAGAGTGGGAAGAACATTTTAGCCGTGCAG
GAGAAAAGTGGGCCATTGAAGGGGACGGGCGTTTGGAAGGTAGAGAGGGA
GGTAGCGAGGGAGGGAGGGAGAAAGTAGGGGGGAAATGTTATGGGGTCTG
TGTAGAAGTAGAAGAAAAGGTCCAGACGAGGTAAGTGTTAATGAAGAAGT
GGACGATCACGTCTTAGTAAGTCATTTTCACCGTGTATCTCCTTCCTCCC
TCCCTCCCTCCCTCCCTCTCCCTCTCTCTCCCCCTCTCTCCGTCCCTCCC
TCCCTCCCTCTCTAGATGCCCACGGGCTTGCTGGACGTGGGGGAGGACAT
TGGCACCGGCGCCGAACGTGAGGTGGGAAGCAGACGCCTTCCCTTCTTCC
CTCTCTTTCTCCCTCCCTCTTTAGCTACCTCCATGCTTTCCGTCTCCCTC
TACGGTTACAGCTCTCTCCCTTCCTTCCTCCCTCCCTCCCGTGTCTTCTC
CATGCCTTCACCTTTCTCTCTTACTTTGGATGAAGACAATTTAAAAAAAC
TTCTCTTTTCGCCTCATCAATTCGTCTTCCCTTCTCTTCCTCTTTCCTTT
CCATTTCCATCCTAAAGGTGAAGGAGGAGACGGGGGTAGACGCGCGGTTT
CGGAGCCTGGTGGCCTTTCGGCATGCTCACGGCTTTGCCTTTGGTAAGAG
TGACTTGTTCTTTGTGGCACGCCTCGAAGTGGAGGAGGGGAGCAGGTAGG
TAGGCAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGACAGGC
TTACCCCTCGGTCAATTTGATGTTTATTCTTTGTGGTCTCGGGGCGATTG
TCTGTGTAGGTAAAGAGGGAAGGTATCATAATGAATTTTTATTTATTATA
TCCCTGTTATTTATTATATCTATCCCTCTCTCCACCCCTCTTTCACTCCA
CCCGTAGCATTCAACCCTGTCCGCGTGAGATCGCGGTCTGTGAGTGGGTG
CCTCTGTCCCTGTTCCTCTCCCAGCCCCGCTTTCTCTCCTCTCCTCTCTA
CGCTTGTGTCTATGATCTATGCCAGGACGTGTTGGAGGAGGGCGGGAGGG
AGGGCGGGAGGGAGGGCGGGGCCCTGACGGCGATTGTGGGGACGCGTCTG
GAGATGGGGTTTAAGCCGGGGACGGCCTGGTTGTATCACACATCACAATG
GCACCATGAGAAGCATGGAAAAGGAGGAGGGGGCGGGAAGGTTGGGAATG
GAAGCAACGGAATAAAGGATGAGGGTGTGATGGCTAGGGTCCGTGAACCG
GTGGAAGGCGGGGCGGGTGGATTTTAAGAGAACGATTTACATTGAAGATA
TAAAAGTAGCTATGTATACGGATAGGAAAAGTGGACAGGGTGAGCTCTCG
ATGAAATTAGT
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Coding sequence (CDS) from alignment at chr23:564433..566943-

>NO23G01530.1 ID=NO23G01530.1|Name=NO23G01530.1|organism=Nannochloropsis oceanica|type=CDS|length=1029bp|location=Sequence derived from alignment at chr23:564433..566943- (Nannochloropsis oceanica)
ATGTCCTCGTCGTCGTCGTCGTCGCCTCCCCCTCCCACTCCTCCTCTGAT
TTCCCCTCCGTCCCCTCCCACCCTACCACCGAGTCCCCTTCATTTGCCGC
ACATGACAGACCATTATCAAGGCATTATTATTGAGACTGAAGGACTCCCC
TCTGATCCTTGTGTCTTCGACAGGCAGTTGAAGGCGTCGCTAACTGCATG
GAAAGCAGAGCACAAACGCGGCATTTGGCTCAAGGTTCCCCTGTCTCTCG
CCTCCCACGTGCCTGTGGCAGCTGCCCAGGGGTTTGAATTCCACCACGCC
GAGCGAGGGTACGTGATGATGACCCGCTGGCTGGCGACCGATACGCCTTG
CACACTCCCGCCCGGGCCCACCCACCAGGTGGGCGTGGGTGCCTTGGTGC
TCGACAAGAGTGGGAAGAACATTTTAGCCGTGCAGGAGAAAAGTGGGCCA
TTGAAGGGGACGGGCGTTTGGAAGATGCCCACGGGCTTGCTGGACGTGGG
GGAGGACATTGGCACCGGCGCCGAACGTGAGGTGAAGGAGGAGACGGGGG
TAGACGCGCGGTTTCGGAGCCTGGTGGCCTTTCGGCATGCTCACGGCTTT
GCCTTTGGTAAGAGTGACTTGTTCTTTGTGGCACGCCTCGAAGTGGAGGA
GGGGAGCAGCATTCAACCCTGTCCGCGTGAGATCGCGGTCTGTGAGTGGG
TGCCTCTGTCCCTGTTCCTCTCCCAGCCCCGCTTTCTCTCCTCTCCTCTC
TACGCTTGTGTCTATGATCTATGCCAGGACGTGTTGGAGGAGGGCGGGAG
GGAGGGCGGGAGGGAGGGCGGGGCCCTGACGGCGATTGTGGGGACGCGTC
TGGAGATGGGGTTTAAGCCGGGGACGGCCTGGTTGTATCACACATCACAA
TGGCACCATGAGAAGCATGGAAAAGGAGGAGGGGGCGGGAAGGTTGGGAA
TGGAAGCAACGGAATAAAGGATGAGGGTGTGATGGCTAGGGTCCGTGAAC
CGGTGGAAGGCGGGGCGGGTGGATTTTAA
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Synonyms
Publications