NO23G01500.1, NO23G01500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01500.1
Unique NameNO23G01500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1336
Alignment locationchr23:548613..550860 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:548613..550860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01500.1 vs.
Match: EWM22898.1 (Ubiquinol-cytochrome c chaperone/UPF0174 [Nannochloropsis gaditana])

HSP 1 Score: 191.4 bits (485), Expect = 4.700e-45
Identity = 109/174 (62.64%), Postives = 130/174 (74.71%), Query Frame = 0 
Query:    5 TTTSLRALRGARR-----LVHLRPLALIS----TTFINTHRPVYLRQSGALTAAAPSSFSTSSTSAANPPANSGRTDDEPQVRATARPTSLTQRILHIFGMGESLKRTKNSEALLQACISQASNTTFYRAGRISDSFRAAHGLLVVHVWMLHKRLLREGEEGKVLEEALFDRLW 170
            +T SLRA++G  R     L H+  LA +S    +  +    P    +  AL+    SSFS++S S+++PP  + RTD EPQVRATAR  SL QRILH FGMGES+KRT+NSEALLQ+CISQA NT FYRAGR+SDSFRAAHGLL+VHVWMLHKRLL EGEEGK+LEEALFDRLW
Sbjct:    3 STASLRAVQGLLRSRHSGLRHVGSLAALSGAQSSPLLCPRHPS--PRPAALSPPLSSSFSSASPSSSSPPLAADRTDAEPQVRATARTLSLPQRILHFFGMGESMKRTRNSEALLQSCISQAGNTIFYRAGRVSDSFRAAHGLLIVHVWMLHKRLLMEGEEGKILEEALFDRLW 174
The following BLAST results are available for this feature:
BLAST of NO23G01500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22898.14.700e-4562.64Ubiquinol-cytochrome c chaperone/UPF0174 [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01500NO23G01500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01500.1NO23G01500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01500.1.cds1NO23G01500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01500.1.cds2NO23G01500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01500.1.cds3NO23G01500.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01500.1.cds4NO23G01500.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01500.1.cds5NO23G01500.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01500.1.cds6NO23G01500.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01500.1 ID=NO23G01500.1|Name=NO23G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp
ACAGACTGGCCACAACCGTTGCTCTACAACCTCTCTACCCTCTCTGCGTC
AACACCGGTGCCATGTACCCGGCTACCACCACCTCTCTCCGAGCGCTCCG
TGGGGCCCGCCGCCTCGTCCATTTGCGTCCCTTGGCCTTGATCTCTACCA
CTTTCATAAACACCCACCGGCCTGTCTATCTCCGCCAGTCAGGAGCTTTG
ACGGCGGCGGCCCCTTCCTCCTTCTCGACCTCCTCCACCTCTGCGGCTAA
CCCCCCTGCTAACTCTGGGCGTACTGATGATGAGCCGCAGGTCCGCGCGA
CTGCCCGTCCCACCTCTTTGACGCAACGTATCCTCCATATATTCGGCATG
GGCGAGTCGTTGAAGCGCACAAAGAACTCAGAAGCTCTCCTGCAAGCGTG
CATCAGCCAGGCAAGCAACACAACTTTTTATCGAGCCGGTCGCATCTCTG
ACTCTTTCCGGGCGGCTCACGGGCTGTTGGTAGTCCACGTGTGGATGCTG
CACAAGCGCTTACTGCGAGAAGGGGAAGAAGGGAAGGTCTTGGAAGAGGC
GCTCTTCGACCGGTTGTGGGACGAGACCACCGCCCGCATTCGTGCTCTGA
AGGTCAACGAACTCTCCGTAAATAGCTATGTAAAAGAGGTGCAATCTTAT
TCATTCGGTGCCTGTGTGTCCTACGACGCTGCTCAAGCCCTCGAGACGGA
GGAAGATAGGGTGGACGAACTGGCTGGCGCACTTTACAGATATGTCTACC
TCCGTGACGAGCACCTGAACGAAGATCACGTACTGGAGCTAGCAAGGTAT
GTGCAGCGCGAGCTTGACTCCCTCATGATGCTGCCGAAAGAAGCGATATT
TGAATCGCGGTTTAAATGGGGTCCTCTCCCATCATGGGGAGGGAGGGCGG
GAGGGAGGGGTGGAGGAAGGGTAGCGCCCCAGTACGTGAGATCAGACGGG
AAGGCAGTACCGGACGAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGAGGT
GGAGAAGGAGGAAGGCAAGACACAGGCGGAGGAGGAGGAGGACAAGAGGG
GGGAATGGCGGACGGCCTTCTCGGAACAGGGTCGAATGTATTATTGGAAT
GTCCGAACGCGGGAATCGACGTACGAGAAGCCCTACTAGCTTCCTTGCCT
GCCCAACCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCGTATGTGA
AGATTGTTAGAAACAGGGAGGGGACTTAATGAGGCTCTTTCCCTCCCCCC
CTCGTCTCCGCCATCGAAACGACATGACAAAGGCATGGAAATAAAACAAA
GAGAGCAAAGGCCATTGAATCAATCGAAGCGAGGCG
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protein sequence of NO23G01500.1

>NO23G01500.1-protein ID=NO23G01500.1-protein|Name=NO23G01500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MYPATTTSLRALRGARRLVHLRPLALISTTFINTHRPVYLRQSGALTAAA
PSSFSTSSTSAANPPANSGRTDDEPQVRATARPTSLTQRILHIFGMGESL
KRTKNSEALLQACISQASNTTFYRAGRISDSFRAAHGLLVVHVWMLHKRL
LREGEEGKVLEEALFDRLWDETTARIRALKVNELSVNSYVKEVQSYSFGA
CVSYDAAQALETEEDRVDELAGALYRYVYLRDEHLNEDHVLELARYVQRE
LDSLMMLPKEAIFESRFKWGPLPSWGGRAGGRGGGRVAPQYVRSDGKAVP
DEEEEEEEGEEEVEKEEGKTQAEEEEDKRGEWRTAFSEQGRMYYWNVRTR
ESTYEKPY*
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mRNA from alignment at chr23:548613..550860+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01500.1 ID=NO23G01500.1|Name=NO23G01500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2248bp|location=Sequence derived from alignment at chr23:548613..550860+ (Nannochloropsis oceanica)
ACAGACTGGCCACAACCGTTGCTCTACAACCTCTCTACCCTCTCTGCGTC
AACACCGGTGCCATGTACCCGGCTACCACCACCTCTCTCCGAGCGCTCCG
TGGGGCCCGCCGCCTCGTCCATTTGCGTCCCTTGGCCTTGATCTCTACCA
CTTTCATAAACACCCACCGGCCTGTCTATCTCCGCCAGTCAGGAGCTTTG
ACGGCGGCGGCCCCTTCCTCCTTCTCGACCTCCTCCACCTCTGCGGCTAA
CCCCCCTGCTAACTCTGGGCGTACTGATGATGAGCCGCAGGTATGCATCC
ATGGGCTTTCATGTCTAGAAACTTCTCTTTTCGTTAGGCATCGTGCTTAC
CGTTTGAGCCCTCTCGCCCTCCCTACTCCCTGTCTTAGGTCCGCGCGACT
GCCCGTCCCACCTCTTTGACGCAACGTATCCTCCATATATTCGGCATGGG
CGAGTCGTTGAAGCGCACAAAGAACTCAGAAGCTCTCCTGCAAGCGTGCA
TCAGCCAGGCAAGCAACACAACTTTTTATCGAGGTAGGTGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAAGAAGAGGGAGGAAGGCAGTGGTTGAATG
ATTGCTTGCGGCGGCCTTAACAATCTTTTAATCTTCTGGTAAAAAACGGC
GAATCATTCGGGGGAAGAAGTAAATTGTCGACGGATGCGAGTGCTGTATT
GGATCGTATCATGGATTCCTTATCCTGCTTTCATCATTCCTTCCCTCCCT
CCCTCCCTCAGCCGGTCGCATCTCTGACTCTTTCCGGGCGGCTCACGGGC
TGTTGGTAGTCCACGTGTGGATGCTGCACAAGCGCTTACTGCGAGAAGGG
GAAGAAGGGAAGGTCTTGGAAGAGGCGCTCTTCGACCGGTTGTGGTACGT
TTCCTCCCTCCTTCCCTCCTCTCTCCCTTCCTTCCTCCCTCCCTCTCTCC
CTCCTCGCACACCCGAGCATTTGATACAATGGGGAAAATGGATAAGGCAC
GGGCGCACAACTTTTTGGTCCATGGTGATATGTCTTCGTCCTTCCTCCCC
TCTTTCCTCCTTCCCTTCTCCCCTCCTTCCCTCCCTCGTCAGTTCAACTG
TTGACTGTCCCCCCCTCCCTCCCTCCCTCCCTCAGGGACGAGACCACCGC
CCGCATTCGTGCTCTGAAGGTCAACGAACTCTCCGTAAATAGCTATGTAA
AAGAGGTGCAATCTTATTCATTCGGTGCCTGTGTGTCCTACGACGCTGCT
CAAGCCCTCGAGACGGAGGAAGATAGGGTGGACGAACTGGCTGGCGCACT
TTACAGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTTCCCTCCTCCCTTTCTTCTTTTTTTTTCTTCCGTCGTTTTTCTC
CGTCTCGCCTCTTTCATATTTAGACGCTCTCTAATTTTCCTCCTTCCCGT
CCTTCCTCTCTCCCTGCGGGACCCAGATATGTCTACCTCCGTGACGAGCA
CCTGAACGAAGATCACGTACTGGAGCTAGCAAGGTACCTCCCTCCCTCTC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCGCGCCTTCAGCCCCAGCTTGGTTCGTGTTTTTCCCTG
ACTGAAACCCCGACACCTCCCTCCCTTCTCCCTCCCTCTCTCTCTCTCCC
TCCCTCAGGTATGTGCAGCGCGAGCTTGACTCCCTCATGATGCTGCCGAA
AGAAGCGATATTTGAATCGCGGTTTAAATGGGGTCCTCTCCCATCATGGG
GAGGGAGGGCGGGAGGGAGGGGTGGAGGAAGGGTAGCGCCCCAGTACGTG
AGATCAGACGGGAAGGCAGTACCGGACGAGGAGGAGGAGGAGGAGGAAGG
GGAGGAGGAGGTGGAGAAGGAGGAAGGCAAGACACAGGCGGAGGAGGAGG
AGGACAAGAGGGGGGAATGGCGGACGGCCTTCTCGGAACAGGGTCGAATG
TATTATTGGAATGTCCGAACGCGGGAATCGACGTACGAGAAGCCCTACTA
GCTTCCTTGCCTGCCCAACCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTC
CCTCGTATGTGAAGATTGTTAGAAACAGGGAGGGGACTTAATGAGGCTCT
TTCCCTCCCCCCCTCGTCTCCGCCATCGAAACGACATGACAAAGGCATGG
AAATAAAACAAAGAGAGCAAAGGCCATTGAATCAATCGAAGCGAGGCG
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Coding sequence (CDS) from alignment at chr23:548613..550860+

>NO23G01500.1 ID=NO23G01500.1|Name=NO23G01500.1|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at chr23:548613..550860+ (Nannochloropsis oceanica)
ATGTACCCGGCTACCACCACCTCTCTCCGAGCGCTCCGTGGGGCCCGCCG
CCTCGTCCATTTGCGTCCCTTGGCCTTGATCTCTACCACTTTCATAAACA
CCCACCGGCCTGTCTATCTCCGCCAGTCAGGAGCTTTGACGGCGGCGGCC
CCTTCCTCCTTCTCGACCTCCTCCACCTCTGCGGCTAACCCCCCTGCTAA
CTCTGGGCGTACTGATGATGAGCCGCAGGTCCGCGCGACTGCCCGTCCCA
CCTCTTTGACGCAACGTATCCTCCATATATTCGGCATGGGCGAGTCGTTG
AAGCGCACAAAGAACTCAGAAGCTCTCCTGCAAGCGTGCATCAGCCAGGC
AAGCAACACAACTTTTTATCGAGCCGGTCGCATCTCTGACTCTTTCCGGG
CGGCTCACGGGCTGTTGGTAGTCCACGTGTGGATGCTGCACAAGCGCTTA
CTGCGAGAAGGGGAAGAAGGGAAGGTCTTGGAAGAGGCGCTCTTCGACCG
GTTGTGGGACGAGACCACCGCCCGCATTCGTGCTCTGAAGGTCAACGAAC
TCTCCGTAAATAGCTATGTAAAAGAGGTGCAATCTTATTCATTCGGTGCC
TGTGTGTCCTACGACGCTGCTCAAGCCCTCGAGACGGAGGAAGATAGGGT
GGACGAACTGGCTGGCGCACTTTACAGATATGTCTACCTCCGTGACGAGC
ACCTGAACGAAGATCACGTACTGGAGCTAGCAAGGTATGTGCAGCGCGAG
CTTGACTCCCTCATGATGCTGCCGAAAGAAGCGATATTTGAATCGCGGTT
TAAATGGGGTCCTCTCCCATCATGGGGAGGGAGGGCGGGAGGGAGGGGTG
GAGGAAGGGTAGCGCCCCAGTACGTGAGATCAGACGGGAAGGCAGTACCG
GACGAGGAGGAGGAGGAGGAGGAAGGGGAGGAGGAGGTGGAGAAGGAGGA
AGGCAAGACACAGGCGGAGGAGGAGGAGGACAAGAGGGGGGAATGGCGGA
CGGCCTTCTCGGAACAGGGTCGAATGTATTATTGGAATGTCCGAACGCGG
GAATCGACGTACGAGAAGCCCTACTAG
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Synonyms
Publications