NO23G01440.1, NO23G01440.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01440.1
Unique NameNO23G01440.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr23:531330..533528 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:531330..533528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01440.1 vs.
Match: XP_005852525.1 (ankyrin repeat and kh domain-containing protein 1 [Nannochloropsis gaditana CCMP526]; EKU23307.1 ankyrin repeat and kh domain-containing protein 1 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 163.7 bits (413), Expect = 1.500e-36
Identity = 100/224 (44.64%), Postives = 135/224 (60.27%), Query Frame = 0 
Query:    2 WHAIHTCVLKKDLPALRWLLHCASTFPSSSPVYTYFSSSSNPSLSPSSSILSSSSAAFVPPHLSSCPSSPPSMTFRPSSRPPSSFIDKGSAYNCTALMIAASDGLDAIVDVLVSYGADVHLRDDNGLSALYLACMGGHASIASFLISRGASPFATCLRDGTTPLHRASLHRRPACAIALLRSLPPALRLALVNQKNDCGETALNYAVDTGNIPLIKLYLAAGAD 226
            W  IH CV ++DLPAL  +L                  S  P + PS++   +SS +F   ++   P++          R P+SFID+ SA+NCTALM+A  +GL A+  +LV++GADV+LRDDNGLSALYL CM GHASI SFL+ +GA P  T  RD T+ LH A LH    C  ALL  LPP LR AL+  ++    TAL+YAV+  +  ++K+ L+AGAD
Sbjct:    3 WCPIHRCVFRRDLPALCQIL------------------SETPRVPPSAA---TSSLSFPSSYVLPSPTT---------LRLPTSFIDEPSAFNCTALMLAVGEGLGAMAMILVAHGADVNLRDDNGLSALYLGCMRGHASIVSFLLYKGADPTVTSQRDNTSCLHIAVLHHYAHCVHALLHGLPPDLRQALLQHRDAFDHTALDYAVEGRDTRIVKILLSAGAD 196
The following BLAST results are available for this feature:
BLAST of NO23G01440.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852525.11.500e-3644.64ankyrin repeat and kh domain-containing protein 1 ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01440NO23G01440Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01440.1NO23G01440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01440.1.cds1NO23G01440.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01440.1.cds2NO23G01440.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01440.1.cds3NO23G01440.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01440.1.cds4NO23G01440.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01440.1 ID=NO23G01440.1|Name=NO23G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
ATGTGGCATGCTATCCACACCTGTGTCCTCAAAAAGGACTTGCCGGCCCT
TCGTTGGCTTCTTCATTGTGCCTCTACCTTCCCTTCATCCTCCCCCGTCT
ACACCTACTTCTCTTCGTCCTCCAATCCCTCTTTATCCCCCTCTTCTAGC
ATCCTCTCCTCCTCCTCCGCCGCCTTCGTCCCACCCCATCTTTCCTCCTG
CCCCTCTTCTCCTCCCTCCATGACTTTTCGCCCTTCTTCTCGCCCTCCTT
CCTCCTTCATCGACAAAGGGAGTGCCTACAACTGCACAGCTCTAATGATC
GCTGCCTCAGACGGGTTGGACGCAATTGTTGATGTCCTTGTCTCATACGG
AGCCGATGTACACCTGAGAGACGACAACGGCCTCAGCGCTCTCTACCTGG
CTTGCATGGGTGGCCACGCCTCTATCGCCTCCTTCCTCATCAGCCGGGGA
GCCTCTCCTTTTGCCACTTGCCTTCGCGATGGAACCACCCCTTTACACCG
CGCTTCCCTCCACCGCCGCCCTGCCTGTGCCATTGCCCTCCTTCGCTCCC
TTCCTCCCGCACTCCGCCTCGCCCTTGTCAATCAAAAGAATGATTGTGGA
GAGACAGCCTTGAATTACGCAGTGGACACGGGAAATATCCCTCTGATCAA
ACTTTACTTGGCTGCTGGTGCCGATGGCCGCGTCAGGAATAGCGGTGGGT
ACCATCCCTTCGGGCGGTACTGGACGATAGAGGAAGAGAGGAAGGGAGGG
GTGATTGCGGTGCTGAGGGAGATCGAGAGGGTGGGGTGTCTTATTAAGGC
CCGAACGCTAGTGGATGATGTGTGGGAGCTCGTAGAGGGGGAGGGAGGGA
AGGAGGAAGAGAAAGAGAAGAGAAAAAGAGGGGTGGTGAAGAAAGAGGGA
GAGGAGAGGGAGGGAAGAAAAGTGCCGTTGTACTTGCAAAAGCGGATGAG
CGGTCTATGCCGGGTAACGAGGGAGAGGGAGAGGACATGGATGAGGAGGA
GGAAAGGGGGTGGGAAGAGGAGGAAGGAGGTGTTGCTGAAAGGCTTGCCG
CGGGTGGTGATTCGGGGAGTAAGGCGGAGAGGGAAGGAGGGCGAGAGGAG
GAGAATGGTTGGGGGGGGAAGGGAGCAAGAGCAGGAGGAGGAGATAGAGC
GTGGAGAGCAAGGGAGAATGGCAAAAAGGTTGAAAAGGGGTGCGGCAATG
CTTGACGAATGTAAATTGGAAAATATGGTGGAGGAGAATGAGGAAAAGGA
TGCGGAGGAAGAGATAGAGGGAAGGAAGGAAGCGGCAAAGAAAGAGATCG
AGACGGCAAAAAATCTCGTCGGGGAGGGTGAGAAATGGAGGAAGGTGGAA
GATGAGCAGGAAGAGCAGGAGGAGACTACGGTGGAAGTGTTTCGGGCGGT
GGTAGAGGGAAATGTACTTACGAGAGTGGTGTTCGAGGAACTCGTTGCTT
ACATGCGTTGCCCTTGGGATCCGGTCGTGGCTGTGTGGGATGGGGGGGAG
GATGGCAGGGAGGTGGCGAAGGTGGGAGGGGTGCAACAATGA
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protein sequence of NO23G01440.1

>NO23G01440.1-protein ID=NO23G01440.1-protein|Name=NO23G01440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MWHAIHTCVLKKDLPALRWLLHCASTFPSSSPVYTYFSSSSNPSLSPSSS
ILSSSSAAFVPPHLSSCPSSPPSMTFRPSSRPPSSFIDKGSAYNCTALMI
AASDGLDAIVDVLVSYGADVHLRDDNGLSALYLACMGGHASIASFLISRG
ASPFATCLRDGTTPLHRASLHRRPACAIALLRSLPPALRLALVNQKNDCG
ETALNYAVDTGNIPLIKLYLAAGADGRVRNSGGYHPFGRYWTIEEERKGG
VIAVLREIERVGCLIKARTLVDDVWELVEGEGGKEEEKEKRKRGVVKKEG
EEREGRKVPLYLQKRMSGLCRVTRERERTWMRRRKGGGKRRKEVLLKGLP
RVVIRGVRRRGKEGERRRMVGGGREQEQEEEIERGEQGRMAKRLKRGAAM
LDECKLENMVEENEEKDAEEEIEGRKEAAKKEIETAKNLVGEGEKWRKVE
DEQEEQEETTVEVFRAVVEGNVLTRVVFEELVAYMRCPWDPVVAVWDGGE
DGREVAKVGGVQQ*
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mRNA from alignment at chr23:531330..533528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01440.1 ID=NO23G01440.1|Name=NO23G01440.1|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp|location=Sequence derived from alignment at chr23:531330..533528+ (Nannochloropsis oceanica)
ATGTGGCATGCTATCCACACCTGTGTCCTCAAAAAGGACTTGCCGGCCCT
TCGTTGGCTTCTTCATTGTGCCTCTACCTTCCCTTCATCCTCCCCCGTCT
ACACCTACTTCTCTTCGTCCTCCAATCCCTCTTTATCCCCCTCTTCTAGC
ATCCTCTCCTCCTCCTCCGCCGCCTTCGTCCCACCCCATCTTTCCTCCTG
CCCCTCTTCTCCTCCCTCCATGACTTTTCGCCCTTCTTCTCGCCCTCCTT
CCTCCTTCATCGACAAAGGGAGTGCCTACAACTGCACAGGTAGGAAAATT
ATCCGCATTTTTAAAGGGAGACAATCCGTACCTTCCCCTTCTCTTCCTCC
TCCCTTCCCTGCCTTCTTCCATCCCTCCCTCCTTGCATACCTGTTTAAAC
ATGCTACTGTCAGGGTGGTGCTAACATCCCTCTCTCGCCTCCCTCCCTTC
GTACCCTACACACAGCTCTAATGATCGCTGCCTCAGACGGGTTGGACGCA
ATTGTTGATGTCCTTGTCTCATACGGAGCCGATGTACACCTGAGAGACGA
CAACGGCCTCAGCGCTCTCTACCTGGCTTGCATGGGTGGTAAGTCACCCG
CCTTTCCACCCTTCCTCCTCTCTTCTCTCCTTTCCTCTCTCCTTTCTTCC
CTCTCTTGACATACAACTGAGAGACGACCAGGGCCCTACTTCTCTTCTTC
CCCCCTTCCCTTGTTTGAGAGGAAAGCTCACACCCTTCCCTTCCTCCTTC
CCTTCCTCCTTCCCTCCCTTCCTCCCCTTCGTCCAGGCCACGCCTCTATC
GCCTCCTTCCTCATCAGCCGGGGAGCCTCTCCTTTTGCCACTTGCCTTCG
CGATGGAACCACCCCTTTACACCGCGCTTCCCTCCACCGCCGCCCTGCCT
GTGCCATTGCCCTCCTTCGCTCCCTTCCTCCCGCACTCCGCCTCGCCCTT
GTCAATCAAAAGAATGATTGTGGAGAGACAGCCTTGAATTACGCAGTGGG
TAAGGTTCTTCCCCTTCCTCCCCCCCCCTCCCTTCCTCCCTCCCTCATCA
TTCCCAAAGAGTCCTTTCATCCCCCTAGCTCTTTTCGTCCCTCGCCTTCC
TTCCATACTCCTTCCCACATTCCTTCCCTCCCTTCCCATCATGTTCGCCG
AGTGTGTCATATTGACTGACACCCGCATCTCCCATGTGCATCTCCCAAAT
TAATAGTTCTTCGGGCTTCCGCCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCCCCCTCCCTCTTTCCTTCCCTTCAGACACGGGAAATATCCCTC
TGATCAAACTTTACTTGGCTGCTGGTGCCGATGGCCGCGTCAGGAATAGC
GGTGGGTACCATCCCTTCGGGCGGTACTGGACGATAGAGGAAGAGAGGAA
GGGAGGGGTGATTGCGGTGCTGAGGGAGATCGAGAGGGTGGGGTGTCTTA
TTAAGGCCCGAACGCTAGTGGATGATGTGTGGGAGCTCGTAGAGGGGGAG
GGAGGGAAGGAGGAAGAGAAAGAGAAGAGAAAAAGAGGGGTGGTGAAGAA
AGAGGGAGAGGAGAGGGAGGGAAGAAAAGTGCCGTTGTACTTGCAAAAGC
GGATGAGCGGTCTATGCCGGGTAACGAGGGAGAGGGAGAGGACATGGATG
AGGAGGAGGAAAGGGGGTGGGAAGAGGAGGAAGGAGGTGTTGCTGAAAGG
CTTGCCGCGGGTGGTGATTCGGGGAGTAAGGCGGAGAGGGAAGGAGGGCG
AGAGGAGGAGAATGGTTGGGGGGGGAAGGGAGCAAGAGCAGGAGGAGGAG
ATAGAGCGTGGAGAGCAAGGGAGAATGGCAAAAAGGTTGAAAAGGGGTGC
GGCAATGCTTGACGAATGTAAATTGGAAAATATGGTGGAGGAGAATGAGG
AAAAGGATGCGGAGGAAGAGATAGAGGGAAGGAAGGAAGCGGCAAAGAAA
GAGATCGAGACGGCAAAAAATCTCGTCGGGGAGGGTGAGAAATGGAGGAA
GGTGGAAGATGAGCAGGAAGAGCAGGAGGAGACTACGGTGGAAGTGTTTC
GGGCGGTGGTAGAGGGAAATGTACTTACGAGAGTGGTGTTCGAGGAACTC
GTTGCTTACATGCGTTGCCCTTGGGATCCGGTCGTGGCTGTGTGGGATGG
GGGGGAGGATGGCAGGGAGGTGGCGAAGGTGGGAGGGGTGCAACAATGA
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Coding sequence (CDS) from alignment at chr23:531330..533528+

>NO23G01440.1 ID=NO23G01440.1|Name=NO23G01440.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr23:531330..533528+ (Nannochloropsis oceanica)
ATGTGGCATGCTATCCACACCTGTGTCCTCAAAAAGGACTTGCCGGCCCT
TCGTTGGCTTCTTCATTGTGCCTCTACCTTCCCTTCATCCTCCCCCGTCT
ACACCTACTTCTCTTCGTCCTCCAATCCCTCTTTATCCCCCTCTTCTAGC
ATCCTCTCCTCCTCCTCCGCCGCCTTCGTCCCACCCCATCTTTCCTCCTG
CCCCTCTTCTCCTCCCTCCATGACTTTTCGCCCTTCTTCTCGCCCTCCTT
CCTCCTTCATCGACAAAGGGAGTGCCTACAACTGCACAGCTCTAATGATC
GCTGCCTCAGACGGGTTGGACGCAATTGTTGATGTCCTTGTCTCATACGG
AGCCGATGTACACCTGAGAGACGACAACGGCCTCAGCGCTCTCTACCTGG
CTTGCATGGGTGGCCACGCCTCTATCGCCTCCTTCCTCATCAGCCGGGGA
GCCTCTCCTTTTGCCACTTGCCTTCGCGATGGAACCACCCCTTTACACCG
CGCTTCCCTCCACCGCCGCCCTGCCTGTGCCATTGCCCTCCTTCGCTCCC
TTCCTCCCGCACTCCGCCTCGCCCTTGTCAATCAAAAGAATGATTGTGGA
GAGACAGCCTTGAATTACGCAGTGGACACGGGAAATATCCCTCTGATCAA
ACTTTACTTGGCTGCTGGTGCCGATGGCCGCGTCAGGAATAGCGGTGGGT
ACCATCCCTTCGGGCGGTACTGGACGATAGAGGAAGAGAGGAAGGGAGGG
GTGATTGCGGTGCTGAGGGAGATCGAGAGGGTGGGGTGTCTTATTAAGGC
CCGAACGCTAGTGGATGATGTGTGGGAGCTCGTAGAGGGGGAGGGAGGGA
AGGAGGAAGAGAAAGAGAAGAGAAAAAGAGGGGTGGTGAAGAAAGAGGGA
GAGGAGAGGGAGGGAAGAAAAGTGCCGTTGTACTTGCAAAAGCGGATGAG
CGGTCTATGCCGGGTAACGAGGGAGAGGGAGAGGACATGGATGAGGAGGA
GGAAAGGGGGTGGGAAGAGGAGGAAGGAGGTGTTGCTGAAAGGCTTGCCG
CGGGTGGTGATTCGGGGAGTAAGGCGGAGAGGGAAGGAGGGCGAGAGGAG
GAGAATGGTTGGGGGGGGAAGGGAGCAAGAGCAGGAGGAGGAGATAGAGC
GTGGAGAGCAAGGGAGAATGGCAAAAAGGTTGAAAAGGGGTGCGGCAATG
CTTGACGAATGTAAATTGGAAAATATGGTGGAGGAGAATGAGGAAAAGGA
TGCGGAGGAAGAGATAGAGGGAAGGAAGGAAGCGGCAAAGAAAGAGATCG
AGACGGCAAAAAATCTCGTCGGGGAGGGTGAGAAATGGAGGAAGGTGGAA
GATGAGCAGGAAGAGCAGGAGGAGACTACGGTGGAAGTGTTTCGGGCGGT
GGTAGAGGGAAATGTACTTACGAGAGTGGTGTTCGAGGAACTCGTTGCTT
ACATGCGTTGCCCTTGGGATCCGGTCGTGGCTGTGTGGGATGGGGGGGAG
GATGGCAGGGAGGTGGCGAAGGTGGGAGGGGTGCAACAATGA
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Synonyms
Publications