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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr23 | genome | chr23:517095..520859 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G01420.1 vs.
Match: OEU22510.1 (S-adenosyl-L-methionine-dependent methyltransferase [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 166.4 bits (420), Expect = 2.300e-37 Identity = 103/273 (37.73%), Postives = 154/273 (56.41%), Query Frame = 0
Query: 1 MPEEHRSQAYQDQPFCINHFHLSAPHIYGSVLEALDLQ--PGVAFLNIGSGTGYLSTVAGLLLEGRGVNHGLEIEGELLSYARRAHAVFCHKEEERTASRRTVTSATFFQGNVYELDEEK---SMRYDRVYIGAACPESMKDKLLSLLLPGNGVLVGPMGDELVKITRGRKEG-----EYTTTVLSAVRFASLKEPGPPSRRFHLPAPLWTPVLHYTYPRTFQLAAKALLLLGAGKRQGGKK--------VGRAVPPAVWMEVLSFVDRQWFE 256
+P+ + A++DQP ++ H+SAPHIYGSVLEALDL+ G++FLN GSGT YL+ +A +L R V++ +EI ++L +++ A + ++ + T+ + GN EL+ K ++ +DR+YIGAA + +L PG G+LVGP+GDELVK+ R + ++TT VLS VRFA L P + +PA +W P H+ YP +F+ A LLL R K V +P A+W+EVLSF WF+
Sbjct: 41 VPKNCQDLAHKDQPIREDNIHISAPHIYGSVLEALDLKKDAGLSFLNAGSGTCYLTCIAASILGHRSVHYCVEIHEDVLRHSKEAITAW----KKGLSPGHTIPNIELIHGNALELNTNKGECALGFDRIYIGAAIQKYSLPMFKKMLKPG-GILVGPVGDELVKVVRSQSLSPETIQKFTTHVLSGVRFAPLL--ADPDIQTIIPARVWDPSKHHLYPSSFRGACNELLLCSNASRNQPVKIRPQEKINVASMLPRALWVEVLSFAHHDWFD 306
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G01420.1 ID=NO23G01420.1|Name=NO23G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=1624bp
CTCCTTCCTTCCCTCCCTCCCTCCCTCCCCCTCGCTTTCAGGCTTTGGCA
TCATCCACACGCCTCGCGTGTACCAAGCCTTGCGTCATGTGGACCGAGGG
GAATTTATGCCCGAGGAGCACCGCTCCCAAGCGTACCAGGATCAGCCTTT
TTGTATCAACCATTTTCACTTGAGCGCTCCTCACATCTACGGCAGTGTGC
TGGAAGCGCTAGACCTACAGCCAGGCGTTGCCTTCCTCAACATCGGGTCA
GGCACGGGGTATCTAAGTACGGTTGCCGGCCTTCTGTTGGAGGGGCGGGG
CGTCAACCATGGCCTTGAGATCGAGGGCGAGCTCTTGTCTTATGCGCGAA
GGGCCCATGCAGTCTTTTGTCACAAGGAGGAGGAGCGAACTGCCTCCAGG
CGGACCGTCACGTCCGCCACCTTCTTTCAGGGCAATGTTTATGAACTTGA
CGAAGAGAAGAGCATGCGCTACGACCGCGTGTATATCGGTGCCGCCTGTC
CCGAGTCTATGAAGGACAAGCTTCTCTCTCTCCTCCTCCCCGGCAACGGC
GTGCTCGTCGGGCCCATGGGCGACGAATTGGTCAAGATAACACGAGGCAG
GAAGGAGGGCGAGTATACTACCACTGTCCTGAGCGCGGTGCGCTTTGCCT
CCCTCAAGGAGCCAGGCCCGCCTTCTAGAAGGTTCCATCTCCCCGCCCCC
TTGTGGACCCCCGTCCTTCACTACACGTACCCACGCACCTTCCAACTAGC
AGCCAAGGCCTTGCTCTTGCTTGGGGCGGGAAAGAGGCAGGGAGGGAAGA
AGGTGGGAAGGGCCGTACCTCCTGCGGTGTGGATGGAGGTGCTCTCTTTT
GTGGACCGACAGTGGTTTGAGCCTGAGCCAGGCTGTGGGGTGGGCTCTAG
CGCTCTCAAGCGGAAGCATGCGACCTCGTCCTCCCTTTCATCCTCCTCCT
CGTCCTCCATCCTGCAACACCTCGACACTATCTGCACTCTCTTCTTTCCC
GTATCCCCTCCCTCTCCCTTTTCCTCCCTCCCCACCTCCTCCACCACAAC
TGTGGACTCAATGCAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAATGGAAACAGC
TTTGGACACTACAATGAGCAGGAGGAAAATGAAGAAGAAGAGGAGGAAGA
GGAAGAAGAGGAGGAGGAAGAAGGGACGGAGGGCGGGATGGATAATCACC
CGCAGTCGGTGGTGTCCTTCCAAGCGTTGTTCCCTCCGCCGCCGCGGTCG
ACTGTCGTGATGATGGGAGAAGCAGCAGGGGGGGGAGGAGGAGGAGGAGG
AGGAGGAGGGATGAGGGATCTACTCTTGTCTTTCTTTACGGTCGGCATCC
CACTTTCTTCTCCTTCGTCTTTTGCATCTTCTGCTTCTGTCGTTGTTGCT
GCTGCTGCTGCTACTCCTTCTGTCCAGGGCGGCGATGGCCATTATTACCG
GGACGAGAACGAGGACAAGAAGCAGCTGGCAGGGCAAAAAAGAGGAGAAC
GGCGACAGAGTGCACGACTTCAGCAGCAGCATCGGCAGTAGGAGGAGGAA
GAGGAGGAGGAAGAGGAGGAGGAG back to topprotein sequence of NO23G01420.1 >NO23G01420.1-protein ID=NO23G01420.1-protein|Name=NO23G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MPEEHRSQAYQDQPFCINHFHLSAPHIYGSVLEALDLQPGVAFLNIGSGT
GYLSTVAGLLLEGRGVNHGLEIEGELLSYARRAHAVFCHKEEERTASRRT
VTSATFFQGNVYELDEEKSMRYDRVYIGAACPESMKDKLLSLLLPGNGVL
VGPMGDELVKITRGRKEGEYTTTVLSAVRFASLKEPGPPSRRFHLPAPLW
TPVLHYTYPRTFQLAAKALLLLGAGKRQGGKKVGRAVPPAVWMEVLSFVD
RQWFEPEPGCGVGSSALKRKHATSSSLSSSSSSSILQHLDTICTLFFPVS
PPSPFSSLPTSSTTTVDSMQCSSSSSSSSSSSSSSSSNNNNSSSNGNSFG
HYNEQEENEEEEEEEEEEEEEEGTEGGMDNHPQSVVSFQALFPPPPRSTV
VMMGEAAGGGGGGGGGGGMRDLLLSFFTVGIPLSSPSSFASSASVVVAAA
AATPSVQGGDGHYYRDENEDKKQLAGQKRGERRQSARLQQQHRQ* back to topmRNA from alignment at chr23:517095..520859- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G01420.1 ID=NO23G01420.1|Name=NO23G01420.1|organism=Nannochloropsis oceanica|type=mRNA|length=3765bp|location=Sequence derived from alignment at chr23:517095..520859- (Nannochloropsis oceanica)
CTCCTTCCTTCCCTCCCTCCCTCCCTCCCCCTCGCTTTCAGGCTTTGGCA
TCATCCACACGCCTCGCGTGTACCAAGCCTTGCGTCATGTGGACCGAGGG
GAATTTATGCCCGAGGAGGTGAGGGAGGGAGGTAGGGAGAAAGGAAAGGA
GATGAGAAGGATGGTAAAAATCAAATATAATTATATATACATACTTCATT
CCCTCCTTCCCTTTAGCACCGCTCCCAAGCGTACCAGGATCAGCCTTTTT
GTATCAACCATTTTCACTTGAGCGCTCCTCACATCTACGGCAGTGGTAAG
GGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAAGGAAGCCGGGAGGG
AAGGAGGGAAAGGAGCGCAGAACTCACAATAACTTCCCTTTCTCCCTTCC
TCCCTCCCTCTCTTCCTCTCTCCTTCCCTTCACCAGTGCTGGAAGCGCTA
GACCTACAGCCAGGCGTTGCCTTCCTCAACATCGGGTCAGGTACTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCCT
TACCTCCCTCCCTTCTCTCCTCTTTTCATCCTTTGGCACGCAAGAAATTC
TCTCACGTCTTCCCCTCTCTTCCTCCCTCTCTCCCTCCCTCCCTCCCTCC
CTCAGGCACGGGGTATCTAAGTACGGTTGCCGGCCTTCTGTTGGAGGGGC
GGGGCGTCAACCATGGTAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGAACAATACGGACAGGTGGGGTGTGTATTTGAGCATGATTCACCCCGTC
TACCCTCCCTTCTTTTCCTCCCTCCCTACCGTCCTGGCTGAGTCGCCACT
TGGGCCGTCCCTCCGCCTATACCCAAACCACTTCCCGTTCCTCCCTCCCT
CCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCC
TTGAGATCGAGGGCGAGCTCTTGTCTTATGCGCGAAGGGCCCATGCAGTC
TTTTGTCACAAGGAGGAGGAGCGAACTGCCTCCAGGTGAGGGGAGGGGGG
GAAGGAAGGAGGAAGGAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGCA
AGGAGAAGGACGTGAGCAAGAAGCCACGCCCTCAAACCCGTTTCTTCTTC
CTCCTCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCA
GGCGGACCGTCACGTCCGCCACCTTCTTTCAGGGCAATGTTTATGAACTT
GACGAAGAGAAGAGCATGCGGTAAGGAGGGAGGGAAGGAGGGAGAGAAGG
AGGGAGGGAAGGAGGGAGGGAATGCGGGAGGAGACGACCGAATGATTTGT
TTCCGCGCAGTGAATGAGACCCTCTTATCCCTCCCTCCCTTCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTTCCTTCCTCCCT
CCCTCCCTACCCCCCTCCCTCCAAGCTACGACCGCGTGTATATCGGTGCC
GCCTGTCCCGAGTCTATGAAGGACAAGCTTCTCTCTCTCCTCCTCCCCGG
CAACGGCGTGCTCGTCGGGCCCATGGTCAGTTCCTCCTTCCCTCCGTCCC
TCCCTCCCACCCTGTCGTCTCGGCAAGCGTGCCTTCCCACTCCCTCCCTT
CTTCCCTCCCTCTTTATCGACCTCGCTCCCATATCCGCATGATACACCCT
CACCGTTGATACACCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCCCTCTGCACTTTCTCCCCACCACAAGGG
CGACGAATTGGTCAAGATAACACGAGGCAGGAAGGAGGGCGAGTATACTA
CCACTGTCCTGAGCGCGGTGCGCTTTGCCTCCCTCAAGGAGCCAGGTCGG
GAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGCGAGGGGAGGGAGGC
TGTAAGGAGATTATGGTTCGATCTGATGACGGATCGTCCTACCCTCCCCT
CCTTCCTCCCTCCCTCTCTCTCGTCTTACAGGCCCGCCTTCTAGAAGGTT
CCATCTCCCCGCCCCCTTGTGGACCCCCGTCCTTCACTACACGTACCCAC
GCACCTTCCAACTAGCAGCCAAGGCCTTGCTCTTGCTTGGGGCGGGAAAG
AGGCAGGGAGGGAAGAAGGTGGGAAGGGCCGTACCTCCTGCGGTGTGGAT
GGTGAGTGAGTCGGGGCGGATGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGAGTGCATGTCTTTTCCCACTACTTCGCATGCGTTGATAAATACATT
AAATTGATCTACTACTTACTAATCAAATGGTCGACTTAATTGGACTACAT
TTGTACATGTACTCATCCGTTCGTCAATTACTTATGTAACGATGCAATGA
TTTGCTCATTTTACAGACTTCTTGATTTATTTATCCCTATCTTGAAATCG
TCATCGCAGGAGGTGCTCTCTTTTGTGGACCGACAGTGGTTTGAGCCTGA
GCCAGGCTGTGGGGTGGGCTCTAGGTGTGAAGGGAGGGAGGGAGGGGGGG
AGGAGAGAGGAAATGTGGTTAGGTACTTGTACTGGAGGACTCGCACAATG
ACCTTTCCCTTCCCCGCTCCCTCCCCCCTCCCTCCCTCCCTCCTTCCCTC
CTTCCTTCCCTTTCTCCTTTCTTCCTTCCGCACAAAACCTCAGCGCTCTC
AAGCGGAAGCATGCGACCTCGTCCTCCCTTTCATCCTCCTCCTCGTCCTC
CATCCTGCAACACCTCGACACTATCTGCACTCTCTTCTTTCCCGTATCCC
CTCCCTCTCCCTTTTCCTCCCTCCCCACCTCCTCCACCACAACTGTGGAC
TCAATGCAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAACAACAACAACAGCAGCAGCAATGGAAACAGCTTTGGAC
ACTACAATGAGCAGGAGGAAAATGAAGAAGAAGAGGAGGAAGAGGAAGAA
GAGGAGGAGGAAGAAGGGACGGAGGGCGGGATGGATAATCACCCGCAGTC
GGTGGTGTCCTTCCAAGCGTTGTTCCCTCCGCCGCCGCGGTCGACTGTCG
TGATGATGGGAGAAGCAGCAGGGGGGGGAGGAGGAGGAGGAGGAGGAGGA
GGGATGAGGGATCTACTCTTGTCTTTCTTTACGGTGCGAAGGGAGGGAGG
GAGGGAGGGTGGATGGGTGATGGTAAAGGAGGGAGGCAGGGAAAGGAGGG
TTGAGCTTTATGTCATACTTGCTTGTTGACTGTCTATTTGATTGAGTTTG
TATTCTTTGTTTTTTCATATCCTTATCATTGTTTTGTATTTAAATTTGCT
CTTCCGGCATGGAGGCATCCACTCACCAAGATATGCATTTCCTCGCGGTC
TTTGACTGACAACCCCCCTCTCTACCTGCAGGTCGGCATCCCACTTTCTT
CTCCTTCGTCTTTTGCATCTTCTGCTTCTGTCGTTGTTGCTGCTGCTGCT
GCTACTCCTTCTGTCCAGGGCGGCGATGGCCATTATTACCGGGACGAGAA
CGAGGACAAGAAGCAGCTGGCAGGGCAAAAAAGAGGAGAACGGCGACAGA
GTGCACGACTTCAGCAGCAGCATCGGCAGTAGGAGGAGGAAGAGGAGGAG
GAAGAGGAGGAGGAG back to topCoding sequence (CDS) from alignment at chr23:517095..520859- >NO23G01420.1 ID=NO23G01420.1|Name=NO23G01420.1|organism=Nannochloropsis oceanica|type=CDS|length=1485bp|location=Sequence derived from alignment at chr23:517095..520859- (Nannochloropsis oceanica)
ATGCCCGAGGAGCACCGCTCCCAAGCGTACCAGGATCAGCCTTTTTGTAT
CAACCATTTTCACTTGAGCGCTCCTCACATCTACGGCAGTGTGCTGGAAG
CGCTAGACCTACAGCCAGGCGTTGCCTTCCTCAACATCGGGTCAGGCACG
GGGTATCTAAGTACGGTTGCCGGCCTTCTGTTGGAGGGGCGGGGCGTCAA
CCATGGCCTTGAGATCGAGGGCGAGCTCTTGTCTTATGCGCGAAGGGCCC
ATGCAGTCTTTTGTCACAAGGAGGAGGAGCGAACTGCCTCCAGGCGGACC
GTCACGTCCGCCACCTTCTTTCAGGGCAATGTTTATGAACTTGACGAAGA
GAAGAGCATGCGCTACGACCGCGTGTATATCGGTGCCGCCTGTCCCGAGT
CTATGAAGGACAAGCTTCTCTCTCTCCTCCTCCCCGGCAACGGCGTGCTC
GTCGGGCCCATGGGCGACGAATTGGTCAAGATAACACGAGGCAGGAAGGA
GGGCGAGTATACTACCACTGTCCTGAGCGCGGTGCGCTTTGCCTCCCTCA
AGGAGCCAGGCCCGCCTTCTAGAAGGTTCCATCTCCCCGCCCCCTTGTGG
ACCCCCGTCCTTCACTACACGTACCCACGCACCTTCCAACTAGCAGCCAA
GGCCTTGCTCTTGCTTGGGGCGGGAAAGAGGCAGGGAGGGAAGAAGGTGG
GAAGGGCCGTACCTCCTGCGGTGTGGATGGAGGTGCTCTCTTTTGTGGAC
CGACAGTGGTTTGAGCCTGAGCCAGGCTGTGGGGTGGGCTCTAGCGCTCT
CAAGCGGAAGCATGCGACCTCGTCCTCCCTTTCATCCTCCTCCTCGTCCT
CCATCCTGCAACACCTCGACACTATCTGCACTCTCTTCTTTCCCGTATCC
CCTCCCTCTCCCTTTTCCTCCCTCCCCACCTCCTCCACCACAACTGTGGA
CTCAATGCAATGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAACAACAACAACAGCAGCAGCAATGGAAACAGCTTTGGA
CACTACAATGAGCAGGAGGAAAATGAAGAAGAAGAGGAGGAAGAGGAAGA
AGAGGAGGAGGAAGAAGGGACGGAGGGCGGGATGGATAATCACCCGCAGT
CGGTGGTGTCCTTCCAAGCGTTGTTCCCTCCGCCGCCGCGGTCGACTGTC
GTGATGATGGGAGAAGCAGCAGGGGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGGATGAGGGATCTACTCTTGTCTTTCTTTACGGTCGGCATCCCACTTT
CTTCTCCTTCGTCTTTTGCATCTTCTGCTTCTGTCGTTGTTGCTGCTGCT
GCTGCTACTCCTTCTGTCCAGGGCGGCGATGGCCATTATTACCGGGACGA
GAACGAGGACAAGAAGCAGCTGGCAGGGCAAAAAAGAGGAGAACGGCGAC
AGAGTGCACGACTTCAGCAGCAGCATCGGCAGTAG back to top
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