NO23G01390.3, NO23G01390.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G01390.3
Unique Name	NO23G01390.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2237
Alignment location	chr23:506388..509964 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:506388..509964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO23G01390.3 vs.
Match: EWM22910.1 (hypothetical protein Naga_101154g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 105.5 bits (262), Expect = 3.700e-19
Identity = 60/127 (47.24%), Postives = 78/127 (61.42%), Query Frame = 0

Query:    8 TVVFVLLASIGSFLFG------LLNDLDVFKPLPAPSLGGETRGGTTT-TTTPPGFVCRTLARETAIGAEDIITITPSILLAGTDDRLRLWENARFGPAKTPQGGLLAIYDDEEEERKEGGKKGEEG 128
            T +F++  S+  FL G      L+ DLDV KP P PS    +  G      TP GF+CRTL RE+ IGAEDI+T+TPS+ + GTDDRLRLWEN  FGP +TPQ     ++    E  +EGG++G  G
Sbjct:    2 TRIFMVTISLVQFLLGSLFLVMLMYDLDVLKPSPRPSERLYSEDGEVHFVPTPSGFICRTLGRESIIGAEDIVTLTPSLFITGTDDRLRLWENPDFGPTRTPQ-----VWFGGREGGREGGREGGGG 123

The following BLAST results are available for this feature:

BLAST of NO23G01390.3 vs.

BLAST of NO23G01390.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22910.1	3.700e-19	47.24	hypothetical protein Naga_101154g2, partial [Nanno...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G01390	NO23G01390	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01390.3	NO23G01390.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01390.3.cds1	NO23G01390.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01390.3.cds2	NO23G01390.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01390.3.cds3	NO23G01390.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01390.3.cds4	NO23G01390.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01390.3.cds5	NO23G01390.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01390.3.cds6	NO23G01390.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01390.3.cds7	NO23G01390.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01390.3.cds8	NO23G01390.3.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:506388..509964+
coding sequence from alignment at chr23:506388..509964+

mRNA sequence

>NO23G01390.3 ID=NO23G01390.3|Name=NO23G01390.3|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp
CACTTTCTCAAATCCTTTCATTCACGACTTTTTCCTTCGCCTATGAAGAC
GCTACATCAAACTTCGGGCTCCCAAGCGAGTGAGCCAAAATGGGTAAAGC
GGTGAAGCCCCTGCACAAGGACCGCTAAAATATTGTAAGAGGCAGGCATC
CGTGTGGGAGCGTAGGAAATGCGGCCATCACGCGCTTGTTCTTCGTTCAT
TCGCCGCAGCAATCCTCATCAAGCCACACACCCACAGTGACATGTACAAA
GGCAACAAGAACAGCAGCAGCAATAGCATTGGTAGCGATGTATTCACTAG
ATATAGCAAAGTCCGCTCCTGCAGTCCTCAGTCCGTTATGAAAAGCACTA
GACTCCATCCGCTTGACGACCTCCCCTCCCACTATCCCTTTCGACGCCAC
ATATTATTCACAGACCATCTTCCGTCTATCCAAAATGCCATCGTCCCTCG
TCAAGACGGTGGTTTTTGTACTGCTGGCCTCCATCGGTTCCTTTCTTTTC
GGCTTATTGAACGACTTGGATGTCTTCAAGCCACTGCCGGCGCCGTCGCT
GGGAGGGGAAACAAGAGGGGGGACGACTACCACCACAACACCACCGGGCT
TCGTCTGTCGAACGCTGGCACGGGAAACCGCTATTGGTGCTGAGGACATT
ATTACTATTACGCCTTCTATCCTTCTGGCGGGGACTGACGACAGGCTCCG
GCTGTGGGAAAATGCTCGCTTTGGTCCGGCCAAGACGCCGCAGGGTGGCC
TCCTTGCGATCTACGACGACGAAGAGGAGGAAAGGAAGGAGGGAGGGAAG
AAGGGAGAGGAAGGCATCACGATCGAGCCAGTGCCTCTCGTGAATTTCCC
GGAAGGCATTGCTTTTCATCCGCATGGAATGTACTACCATAGGGAAACCT
CGAAGCTTTTCGTCATCAACCATGCCTACGAGAAAGGCGGCGAGCGCATC
GACGTCTTCCACCTCCCCTTCACCACCATCACCAGCAGCAGGAGCAGAAG
CAGCAGGAGGATGAGGCTCGTGCATGCGAGATGGTTGTATGTCCTGGCTC
CACCTATATTCCAAGCCGAGTGTATGGGCACCCTGAATGACCTCGTTGTC
CTGCACTCCCTCCCTGCCGCTGCGGCTGGTGGGAAGGAGGGAGGGAGGGA
GCCAAGGAGGGAGGACGAGCTGTATGTAACGCATTACCGAGCGTTTCCGG
ACGCGGCGGCGGGACGGTTGGTCCCTGGCAATATCTTGGCTGGTGTGCAC
GACCTGCTCAATTTCTTTAGTATTGTCTCTAGGCGGCGATGGACGCGGGT
GCTGTACTGCAAGGGTAACGTCTGCCGTCCAACGGAAATAAACGGCAAGC
AAGGCGGAGGCGTTCTCTTCAACGGCATCAACGTATCCCCCGACAGAAAA
CGGTTGCTGGTCGCAGACATGAAGTCCGTACAGGTCCTGGAAATCGATCC
CTCCCTCCCTCTCTCCCTCCACCGCCTGGCCCATCTTCCGACTCCTCACC
TCGTGGATAATATCGAGGGCATTCGTTCCGAGACTGAGGGAGGGAGGGAG
GGAGGGGGGGAGGAACTGGAGAGCTACACCTTGGGATGTGCGTAGGGGAG
GGAGGGAGGGTAGGCGGGAGGGAGGGAGGTAGAAAGAGGTCACGGACTGG
ACGATACATGATGAGATCAAAACAGACACCGATATATACATTTTTTTACC
TTCCTTTCTTCCCTTTACTTACCTCCCTCCCTACCTCTCTCCCTACCCTC
CCTTGTAGCGTGTGGGCATCTGTGGATGTTCCTGAGGCACAACCTCCATT
ACGCCGGCCAGGCTCACGGGGACCGGGCCATGGTCTACAACATCACGGGC
GGAGTGCAGCGTCTCCAGAGGGAGGGAGGGACGGAGGGAGAGTACGTGGT
GAAGGAGGTCCTTCTGCAGGATGGAAGCGGCTTGAGTGGCGTCAGTGGTG
CTGCCATGCTATCCCGCTTCTCTTCATCGTCGGAAGGGGGGGAAAGGAGA
GAGAGGTACGTGATGGGATCCTGGTCGGACAGGGGTATAATGGTGTGTGA
AAAACAAGAAATGAAGGAGATGAAAGAGGAGGAGGAGGAGGATGGAGGGG
TACAGGAGGGCGAGGGGAAAGAGGAGCTGTGAGTGAATCAAAACAACTAT
GTACATCCAGAATAAGTGCCTTTAAATGAGAAGACGTAAACTGCACAGGG
AGATGTCTCATCTCAGCCATAGTAGCTCATCTTTGTC

protein sequence of NO23G01390.3

>NO23G01390.3-protein ID=NO23G01390.3-protein|Name=NO23G01390.3|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MPSSLVKTVVFVLLASIGSFLFGLLNDLDVFKPLPAPSLGGETRGGTTTT
TTPPGFVCRTLARETAIGAEDIITITPSILLAGTDDRLRLWENARFGPAK
TPQGGLLAIYDDEEEERKEGGKKGEEGITIEPVPLVNFPEGIAFHPHGMY
YHRETSKLFVINHAYEKGGERIDVFHLPFTTITSSRSRSSRRMRLVHARW
LYVLAPPIFQAECMGTLNDLVVLHSLPAAAAGGKEGGREPRREDELYVTH
YRAFPDAAAGRLVPGNILAGVHDLLNFFSIVSRRRWTRVLYCKGNVCRPT
EINGKQGGGVLFNGINVSPDRKRLLVADMKSVQVLEIDPSLPLSLHRLAH
LPTPHLVDNIEGIRSETEGGREGGGEELESYTLGCA*

mRNA from alignment at chr23:506388..509964+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G01390.3 ID=NO23G01390.3|Name=NO23G01390.3|organism=Nannochloropsis oceanica|type=mRNA|length=3577bp|location=Sequence derived from alignment at chr23:506388..509964+ (Nannochloropsis oceanica)
CACTTTCTCAAATCCTTTCATTCACGACTTTTTCCTTCGCCTATGAAGAC
GCTACATCAAACTTCGGGCTCCCAAGCGAGTGAGCCAAAATGGGTAAAGC
GGTGAAGCCCCTGCACAAGGACCGCTAAAATATTGTAAGAGGCAGGCATC
CGTGTGGGAGCGTAGGAAATGCGGCCATCACGCGCTTGTTCTTCGTTCAT
TCGCCGCAGCAATCCTCATCAAGCCACACACCCACAGTGACATGTACAAA
GGCAACAAGAACAGCAGCAGCAATAGCATTGGTAGCGATGTATTCACTAG
ATATAGCAAAGTCCGCTCCTGCAGTCCTCAGTCCGTTATGAAAAGCACTA
GACTCCATCCGCTTGACGACCTCCCCTCCCACTATCCCTTTCGACGCCAC
ATATTATTCACAGACCATCTTCCGTCTATCCAAAATGCCATCGTCCCTCG
TCAAGACGGTGGTTTTTGTACTGCTGGCCTCCATCGGTTCCTTTCTTTTC
GGCTTATTGAACGACTTGGATGTCTTCAAGCCACTGCCGGCGCCGTCGCT
GGGAGGGGAAACAAGAGGGGGGACGACTACCACCACAACACCACCGGGCT
TCGTCTGTCGAACGCTGGCACGGGAAACCGCTATTGGTAAGAAAGGAAAT
TACTACGAAAGAAAGAAAAAAAGGAGAGAGGTGGAATGGGTGAAGGCGGG
AGCACGTCTTGGTCAACGAGACACGGCAGTCATCCCTCCCTCCTCCCCTC
CCTCCATTTCTTTACTCGATCACAGGTGCTGAGGACATTATTACTATTAC
GCCTTCTATCCTTCTGGCGGGGACTGACGACAGGCTCCGGCTGTGGGAAA
ATGCTCGCTTTGGTCCGGCCAAGACGCCGCAGGCAGGGAGGGAGGGAAGG
AGGGAGGGAAGGCGAGATGGCAAAGGAGTGATGAAGGCGTGTGGAGGTAG
AGTGAGAAAGAGTAACGAAGTGACGGACATGATAATTTTTATCGTGATAC
TTACAGTGTCATTAAATTTTACCTTCCATCCTACAGGGTGGCCTCCTTGC
GATCTACGACGACGAAGAGGAGGAAAGGAAGGAGGGAGGGAAGAAGGGAG
AGGAAGGCATCACGATCGAGCCAGTGCCTCTCGTGAATTTCCCGGAAGGC
ATTGCTTTTCATCCGCATGGAATGTACTACCATAGGTGAGAAGGGAGGGA
GGGAGGTGGAGGATCGGGCAGGTTGACCTGCACGTACAAGGAATAAGGGG
GGGAGAGCAATGGGGGAGATTCAGACGACTGAGAAACATCACACTCACCC
TAGGGAAACCTCGAAGCTTTTCGTCATCAACCATGCCTACGAGAAAGGTA
AGACGCTCCCCCTTTCTTCCTTCCTCCATTCTTCCCACCCTCCCTCCTTT
CCTCCTGCCCTGCCTCCCTCCCTCCCTCCCACCCATCCTCACACCTTTTC
ACCCTCTCTCTCCCTTCTTCTTCATTCCCATCCAGGCGGCGAGCGCATCG
ACGTCTTCCACCTCCCCTTCACCACCATCACCAGCAGCAGGAGCAGAAGC
AGCAGGAGGATGAGGCTCGTGCATGCGAGATGGTTGTATGTCCTGGCTCC
ACCTATATTCCAAGCCGAGTGTATGGGCACCCTGAATGACCTCGTTGTCC
TGCACTCCCTCCCTGCCGCTGCGGCTGGTGGGAAGGAGGGAGGGAGGGAG
CCAAGGAGGGAGGACGAGCTGTATGTAACGCATTACCGAGCGTTTCCGGA
CGCGGCGGCGGGACGGTTGGTCCCTGGCAATATCTTGGCTGGGTAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGAAGGGAATTGAGGGAGGAAGGGAACCTGAGA
ACAAACGGTTGCTGACCATCTCTTCTCCTTCTGTCCCCCCATTTCCTCCC
CTTCCTCCTCCCTTTTTTCCCTCCTCCCTTCCCTCCTTCCTTCCCTCCCT
CCATCCCTCTCTCTCTCGCCTTCCTCCCCTTCTTCCTTCCCTCTTTCCCT
AGTGTGCACGACCTGCTCAATTTCTTTAGTATTGTCTCTAGGCGGCGATG
GACGCGGGTGCTGTACTGCAAGGTAGGTTGATGTGACCTTCCTCTCTCCC
TCCCTTCCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCCCCTCCCTCT
TCTTCAGAGTTCGCTTTTTCCGGTTTCCCGGGACGCAGCAGAGATGCTTT
TCTAACGCTGAGGCTCGTGCTTCCGACCACTCCATCCCCCCTCTCTTATT
TCCACCCTCTCTCCCTCCCCTTCTCGACAGGGTAACGTCTGCCGTCCAAC
GGAAATAAACGGCAAGCAAGGCGGAGGCGTTCTCTTCAACGGCATCAACG
TATCCCCCGACAGAAAACGGTTGCTGGTCGCAGACATGAAGGTAGCCCTC
CCTCATTCTCTCTCTCCATATCTCCCTCCCTCCCTCCATTTGCTTTGCTC
CTTCCTCTTAGCCTTTAGAGTCCCCGAGAAAACCGTATCGTTCCTCCTCC
TTCACCCTCTCCCTCCCTTTCTCCCTCCCTCCCTCTGTAGTCCGTACAGG
TCCTGGAAATCGATCCCTCCCTCCCTCTCTCCCTCCACCGCCTGGCCCAT
CTTCCGACTCCTCACCTCGTGGATAATATCGAGGGCATTCGTTCCGAGAC
TGAGGGAGGGAGGGAGGGAGGGGGGGAGGAACTGGAGAGCTACACCTTGG
GATGTGCGTAGGGGAGGGAGGGAGGGTAGGCGGGAGGGAGGGAGGTAGAA
AGAGGTCACGGACTGGACGATACATGATGAGATCAAAACAGACACCGATA
TATACATTTTTTTACCTTCCTTTCTTCCCTTTACTTACCTCCCTCCCTAC
CTCTCTCCCTACCCTCCCTTGTAGCGTGTGGGCATCTGTGGATGTTCCTG
AGGCACAACCTCCATTACGCCGGCCAGGCTCACGGGGACCGGGCCATGGT
CTACAACATCACGGGCGGAGTGCAGCGTCTCCAGAGGGAGGGAGGGACGG
AGGGAGAGTACGTGGTGAAGGAGGTCCTTCTGCAGGTGCGTTTTTGGGGG
GCCTCTCCAAAGTCAAACGCGACGATGCCCACCCTTGTCTACATGATGCA
CGAACCCGTTCTTGCTCCTGCTCAACAACCTCTACTTCTTTTCAGTCAAA
CTCTTTGTTTCTCAATATGTTGCTGATTTATCCTCACGTTATCTATGAAT
CGCCACCAGGATGGAAGCGGCTTGAGTGGCGTCAGTGGTGCTGCCATGCT
ATCCCGCTTCTCTTCATCGTCGGAAGGGGGGGAAAGGAGAGAGAGGTACG
TGATGGGATCCTGGTCGGACAGGGGTATAATGGTGTGTGAAAAACAAGAA
ATGAAGGAGATGAAAGAGGAGGAGGAGGAGGATGGAGGGGTACAGGAGGG
CGAGGGGAAAGAGGAGCTGTGAGTGAATCAAAACAACTATGTACATCCAG
AATAAGTGCCTTTAAATGAGAAGACGTAAACTGCACAGGGAGATGTCTCA
TCTCAGCCATAGTAGCTCATCTTTGTC

Coding sequence (CDS) from alignment at chr23:506388..509964+

>NO23G01390.3 ID=NO23G01390.3|Name=NO23G01390.3|organism=Nannochloropsis oceanica|type=CDS|length=1161bp|location=Sequence derived from alignment at chr23:506388..509964+ (Nannochloropsis oceanica)
ATGCCATCGTCCCTCGTCAAGACGGTGGTTTTTGTACTGCTGGCCTCCAT
CGGTTCCTTTCTTTTCGGCTTATTGAACGACTTGGATGTCTTCAAGCCAC
TGCCGGCGCCGTCGCTGGGAGGGGAAACAAGAGGGGGGACGACTACCACC
ACAACACCACCGGGCTTCGTCTGTCGAACGCTGGCACGGGAAACCGCTAT
TGGTGCTGAGGACATTATTACTATTACGCCTTCTATCCTTCTGGCGGGGA
CTGACGACAGGCTCCGGCTGTGGGAAAATGCTCGCTTTGGTCCGGCCAAG
ACGCCGCAGGGTGGCCTCCTTGCGATCTACGACGACGAAGAGGAGGAAAG
GAAGGAGGGAGGGAAGAAGGGAGAGGAAGGCATCACGATCGAGCCAGTGC
CTCTCGTGAATTTCCCGGAAGGCATTGCTTTTCATCCGCATGGAATGTAC
TACCATAGGGAAACCTCGAAGCTTTTCGTCATCAACCATGCCTACGAGAA
AGGCGGCGAGCGCATCGACGTCTTCCACCTCCCCTTCACCACCATCACCA
GCAGCAGGAGCAGAAGCAGCAGGAGGATGAGGCTCGTGCATGCGAGATGG
TTGTATGTCCTGGCTCCACCTATATTCCAAGCCGAGTGTATGGGCACCCT
GAATGACCTCGTTGTCCTGCACTCCCTCCCTGCCGCTGCGGCTGGTGGGA
AGGAGGGAGGGAGGGAGCCAAGGAGGGAGGACGAGCTGTATGTAACGCAT
TACCGAGCGTTTCCGGACGCGGCGGCGGGACGGTTGGTCCCTGGCAATAT
CTTGGCTGGTGTGCACGACCTGCTCAATTTCTTTAGTATTGTCTCTAGGC
GGCGATGGACGCGGGTGCTGTACTGCAAGGGTAACGTCTGCCGTCCAACG
GAAATAAACGGCAAGCAAGGCGGAGGCGTTCTCTTCAACGGCATCAACGT
ATCCCCCGACAGAAAACGGTTGCTGGTCGCAGACATGAAGTCCGTACAGG
TCCTGGAAATCGATCCCTCCCTCCCTCTCTCCCTCCACCGCCTGGCCCAT
CTTCCGACTCCTCACCTCGTGGATAATATCGAGGGCATTCGTTCCGAGAC
TGAGGGAGGGAGGGAGGGAGGGGGGGAGGAACTGGAGAGCTACACCTTGG
GATGTGCGTAG

Synonyms

Publications