NO23G01370.3, NO23G01370.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G01370.3
Unique Name	NO23G01370.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1606
Alignment location	chr23:494952..496817 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:494952..496817 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO23G01370.3 vs.
Match: EWM22911.1 (NAD(P)-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 223.8 bits (569), Expect = 9.300e-55
Identity = 109/161 (67.70%), Postives = 132/161 (81.99%), Query Frame = 0

Query:   44 RLYQRRPFLRPLPP--LHVHLDLKGVSVRESDLALFRSLLDPSITLSHGQEVDPRTQLLIANFPTKDTIARLQPTLQSLIFPFAGAPLSFLQHCASAYPSLTLHNLHHNAPPTAEMGLALLLAAAKLLIPADQQLRGNDWKAGGGPSLAITLQEEYAGQLI 203
            R+ +++   R LPP  LHVH+ LKGV+VRESD+ L RSLL PSITL+HG EVDP TQ+L+ANFP+K+ +ARL PTL++LIFPFAG PL FL HCAS +P L++HNLHHNAPPTAEMGL LLLAAAK L+PAD QLR  DW+AGGGPSL +T++EE AG  I
Sbjct:   50 RIKEKKQRPRALPPASLHVHVALKGVTVRESDIGLLRSLLHPSITLTHGDEVDPLTQVLVANFPSKELLARLAPTLRALIFPFAGVPLPFLAHCASVHPHLSVHNLHHNAPPTAEMGLTLLLAAAKCLLPADAQLRRGDWRAGGGPSLNVTMREEAAGVCI 210

The following BLAST results are available for this feature:

BLAST of NO23G01370.3 vs.

BLAST of NO23G01370.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM22911.1	9.300e-55	67.70	NAD(P)-binding domain protein [Nannochloropsis gad...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G01370	NO23G01370	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01370.3	NO23G01370.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G01370.3.cds1	NO23G01370.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01370.3.cds2	NO23G01370.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G01370.3.cds3	NO23G01370.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:494952..496817-
coding sequence from alignment at chr23:494952..496817-

mRNA sequence

>NO23G01370.3 ID=NO23G01370.3|Name=NO23G01370.3|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp
ACAGCCTACCCTGAGACACATAAATACAGCCAGCATGACTGCTTTCTCCT
CCTTGAGCAATAGCAGCGGCAGTCCCTGCAGTATTGGTGCAACCACCCTC
CTCCTTACCACGGCCTGCGCCGCCACGACTGTCGCCGCCGTACTCCTTTG
CAACAGAAAGCACCGCCTTTACCAGCGACGACCTTTTCTCCGTCCTCTTC
CTCCGCTTCACGTTCACTTGGATCTGAAAGGTGTCTCGGTCCGTGAGAGC
GACTTGGCTCTGTTCCGCTCATTATTGGATCCCTCGATCACTCTGTCACA
TGGCCAGGAGGTTGATCCACGGACACAGTTGTTGATAGCCAATTTCCCCA
CGAAAGACACAATCGCCCGCCTTCAGCCCACCCTCCAATCCCTCATCTTC
CCTTTCGCCGGCGCCCCCCTCTCCTTCCTTCAGCACTGCGCCTCCGCCTA
CCCCTCTCTCACCCTACACAATCTCCACCACAACGCCCCTCCGACCGCCG
AGATGGGCCTGGCCCTACTCCTTGCCGCTGCGAAGCTCCTCATCCCCGCC
GACCAGCAGCTGCGGGGAAACGACTGGAAAGCAGGCGGAGGACCGTCGCT
AGCTATCACCCTTCAAGAAGAATATGCAGGCCAGCTCATCTTGGAAGGGA
AGCAAGCCCTCATCCTTGGATATGGCGTCATCGGCCGGCGTCTTGCCCGA
GGCTGCCTCTCCCTTGGCATGGCCGTCAAAGCCGTCAAGAGGGAGGGCTG
GAGGGAGGGCGGGAAGGAGAGCGAGCCAGGTCAAGCCGCAGGAGGGCTAA
TGAGGTGGATGACAGGATTGTTCCAGCCTCTGGCAAAGGAGGGAGGGAGG
GAGGAAGGGAGAGAGGGAGGGGTCGACATTATCTCGCTTGCGTCCTTGCA
CACCGAGCTTCCGCAGACAACGGCGCTCCTTATCGCCCTTCCGGAGACAG
CAGCAACTGTAGGACTGATTGGCTCGGAAGAAATAGCTCTCTTGCCTCCT
TCTGCTGTCGTGGTGAACGTGGGGAGAGGTGGTGTGGTGGACGAGGAGGC
GCTTTACCATGCGCTCAAGGAGAAGCGGATATGGGCTGCAGGATTGGATG
TCTGGTGGCAGGTGAGGGGGATGGAGGAAGGGAGGATGGGATGGATTTTA
CGCTCTATTAAAATGGATACTTTAAGTTGTCCACGCTTCTAATTCACACC
CACCGTTCCTCCGTCCCCATCTCCCTTTCTTCCCTCCTTCCCTCTCTCCC
TCTCTTCACTGAGGCAGTACCCCACCAAAGAGCAGCCTCGCATGCCTCCC
TCCGCCTTTCCCTACCACGAGCTTTCAAACTGCGTCCTAAGCCCGCACCG
AGGGGGCGCCGCCGGGATCGCGGAGAGTGAAACCAGACGCATGTATGCCT
TGGCGGCTTTGATCAATGAAGGGAGGGAGGGAGAGAGGGAGGGGTGGGGG
AATGTGCAGGGAATGGGGAACCGACTGTGCGTGAAGAAGGGCTACTAGAT
GCAAGGTTAAACAGATATGCGAAGAAATAAAGTAATAGCCATCAAGAAAC
AATAAACGCGTCATTTGTACGTAACGCCATGTTAATGGGCCAAGGAGAGG
TATGCG

protein sequence of NO23G01370.3

>NO23G01370.3-protein ID=NO23G01370.3-protein|Name=NO23G01370.3|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MTAFSSLSNSSGSPCSIGATTLLLTTACAATTVAAVLLCNRKHRLYQRRP
FLRPLPPLHVHLDLKGVSVRESDLALFRSLLDPSITLSHGQEVDPRTQLL
IANFPTKDTIARLQPTLQSLIFPFAGAPLSFLQHCASAYPSLTLHNLHHN
APPTAEMGLALLLAAAKLLIPADQQLRGNDWKAGGGPSLAITLQEEYAGQ
LILEGKQALILGYGVIGRRLARGCLSLGMAVKAVKREGWREGGKESEPGQ
AAGGLMRWMTGLFQPLAKEGGREEGREGGVDIISLASLHTELPQTTALLI
ALPETAATVGLIGSEEIALLPPSAVVVNVGRGGVVDEEALYHALKEKRIW
AAGLDVWWQVRGMEEGRMGWILRSIKMDTLSCPRF*

mRNA from alignment at chr23:494952..496817-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G01370.3 ID=NO23G01370.3|Name=NO23G01370.3|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at chr23:494952..496817- (Nannochloropsis oceanica)
ACAGCCTACCCTGAGACACATAAATACAGCCAGCATGACTGCTTTCTCCT
CCTTGAGCAATAGCAGCGGCAGTCCCTGCAGTATTGGTGCAACCACCCTC
CTCCTTACCACGGCCTGCGCCGCCACGACTGTCGCCGCCGTACTCCTTTG
CAACAGAAAGCACCGCCTTTACCAGCGACGACCTTTTCTCCGTCCTCTTC
CTCCGCTTCACGTTCACTTGGATCTGAAAGGTGTCTCGGTCCGTGAGAGC
GACTTGGCTCTGTTCCGCTCATTATTGGATCCCTCGATCACTCTGTCACA
TGGCCAGGAGGTTGATCCACGGACACAGTTGTTGATAGCCAATTTCCCCA
CGAAAGGTGAAGAGGAGGGAAGGCGGAAGGGAGAAAACATTTATTATAGG
TCGAGTAACGAGGGCGAAAGTCTGTCTATCACCTCTTATCAGAGCGAGGG
AAAGACGTCTGTCTTACCGTGATTCCTTATTTCTCTCTCCATCTCCTACC
CTCCCTTGGTAAAGACACAATCGCCCGCCTTCAGCCCACCCTCCAATCCC
TCATCTTCCCTTTCGCCGGCGCCCCCCTCTCCTTCCTTCAGCACTGCGCC
TCCGCCTACCCCTCTCTCACCCTACACAATCTCCACCACAACGCCCCTCC
GACCGCCGAGATGGGCCTGGCCCTACTCCTTGCCGCTGCGAAGCTCCTCA
TCCCCGCCGACCAGCAGCTGCGGGGAAACGACTGGAAAGCAGGCGGAGGA
CCGTCGCTAGCTATCACCCTTCAAGAAGAATATGCAGGTGCGTATCTACC
ACCATCACCACCTTCAAAATAAGGCCAAGGACGGATCACCTCCACCCACC
CACACCCCTTAATCCCTTGATCCCTTCCTGCTCATGCAGGCCAGCTCATC
TTGGAAGGGAAGCAAGCCCTCATCCTTGGATATGGCGTCATCGGCCGGCG
TCTTGCCCGAGGCTGCCTCTCCCTTGGCATGGCCGTCAAAGCCGTCAAGA
GGGAGGGCTGGAGGGAGGGCGGGAAGGAGAGCGAGCCAGGTCAAGCCGCA
GGAGGGCTAATGAGGTGGATGACAGGATTGTTCCAGCCTCTGGCAAAGGA
GGGAGGGAGGGAGGAAGGGAGAGAGGGAGGGGTCGACATTATCTCGCTTG
CGTCCTTGCACACCGAGCTTCCGCAGACAACGGCGCTCCTTATCGCCCTT
CCGGAGACAGCAGCAACTGTAGGACTGATTGGCTCGGAAGAAATAGCTCT
CTTGCCTCCTTCTGCTGTCGTGGTGAACGTGGGGAGAGGTGGTGTGGTGG
ACGAGGAGGCGCTTTACCATGCGCTCAAGGAGAAGCGGATATGGGCTGCA
GGATTGGATGTCTGGTGGCAGGTGAGGGGGATGGAGGAAGGGAGGATGGG
ATGGATTTTACGCTCTATTAAAATGGATACTTTAAGTTGTCCACGCTTCT
AATTCACACCCACCGTTCCTCCGTCCCCATCTCCCTTTCTTCCCTCCTTC
CCTCTCTCCCTCTCTTCACTGAGGCAGTACCCCACCAAAGAGCAGCCTCG
CATGCCTCCCTCCGCCTTTCCCTACCACGAGCTTTCAAACTGCGTCCTAA
GCCCGCACCGAGGGGGCGCCGCCGGGATCGCGGAGAGTGAAACCAGACGC
ATGTATGCCTTGGCGGCTTTGATCAATGAAGGGAGGGAGGGAGAGAGGGA
GGGGTGGGGGAATGTGCAGGGAATGGGGAACCGACTGTGCGTGAAGAAGG
GCTACTAGATGCAAGGTTAAACAGATATGCGAAGAAATAAAGTAATAGCC
ATCAAGAAACAATAAACGCGTCATTTGTACGTAACGCCATGTTAATGGGC
CAAGGAGAGGTATGCG

Coding sequence (CDS) from alignment at chr23:494952..496817-

>NO23G01370.3 ID=NO23G01370.3|Name=NO23G01370.3|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at chr23:494952..496817- (Nannochloropsis oceanica)
ATGACTGCTTTCTCCTCCTTGAGCAATAGCAGCGGCAGTCCCTGCAGTAT
TGGTGCAACCACCCTCCTCCTTACCACGGCCTGCGCCGCCACGACTGTCG
CCGCCGTACTCCTTTGCAACAGAAAGCACCGCCTTTACCAGCGACGACCT
TTTCTCCGTCCTCTTCCTCCGCTTCACGTTCACTTGGATCTGAAAGGTGT
CTCGGTCCGTGAGAGCGACTTGGCTCTGTTCCGCTCATTATTGGATCCCT
CGATCACTCTGTCACATGGCCAGGAGGTTGATCCACGGACACAGTTGTTG
ATAGCCAATTTCCCCACGAAAGACACAATCGCCCGCCTTCAGCCCACCCT
CCAATCCCTCATCTTCCCTTTCGCCGGCGCCCCCCTCTCCTTCCTTCAGC
ACTGCGCCTCCGCCTACCCCTCTCTCACCCTACACAATCTCCACCACAAC
GCCCCTCCGACCGCCGAGATGGGCCTGGCCCTACTCCTTGCCGCTGCGAA
GCTCCTCATCCCCGCCGACCAGCAGCTGCGGGGAAACGACTGGAAAGCAG
GCGGAGGACCGTCGCTAGCTATCACCCTTCAAGAAGAATATGCAGGCCAG
CTCATCTTGGAAGGGAAGCAAGCCCTCATCCTTGGATATGGCGTCATCGG
CCGGCGTCTTGCCCGAGGCTGCCTCTCCCTTGGCATGGCCGTCAAAGCCG
TCAAGAGGGAGGGCTGGAGGGAGGGCGGGAAGGAGAGCGAGCCAGGTCAA
GCCGCAGGAGGGCTAATGAGGTGGATGACAGGATTGTTCCAGCCTCTGGC
AAAGGAGGGAGGGAGGGAGGAAGGGAGAGAGGGAGGGGTCGACATTATCT
CGCTTGCGTCCTTGCACACCGAGCTTCCGCAGACAACGGCGCTCCTTATC
GCCCTTCCGGAGACAGCAGCAACTGTAGGACTGATTGGCTCGGAAGAAAT
AGCTCTCTTGCCTCCTTCTGCTGTCGTGGTGAACGTGGGGAGAGGTGGTG
TGGTGGACGAGGAGGCGCTTTACCATGCGCTCAAGGAGAAGCGGATATGG
GCTGCAGGATTGGATGTCTGGTGGCAGGTGAGGGGGATGGAGGAAGGGAG
GATGGGATGGATTTTACGCTCTATTAAAATGGATACTTTAAGTTGTCCAC
GCTTCTAA

Synonyms

Publications