NO23G01370.2, NO23G01370.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01370.2
Unique NameNO23G01370.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1450
Alignment locationchr23:494952..496817 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:494952..496817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01370.2 vs.
Match: WP_095043880.1 (hydroxyacid dehydrogenase [Candidatus Promineofilum breve]; CUS04561.2 putative dehydrogenase [Candidatus Promineofilum breve])

HSP 1 Score: 241.1 bits (614), Expect = 6.300e-60
Identity = 152/380 (40.00%), Postives = 208/380 (54.74%), Query Frame = 0 
Query:   58 LHVHLDLKGVSVRESDLALFRSLLDPSITLSHGQEVDPRTQLLIANFPTKDTIARLQPTLQSLIFPFAGAPLSFLQHCASAYPSLTLHNLHHNAPPTAEMGLALLLAAAKLLIPADQQLRGNDWKAGGGPSLAITLQEEYAGQLILEGKQALILGYGVIGRRLARGCLSLGMAVKAVKREGWREGGKESEPGQAAGGLMRWMTGLFQPLAKEGGREEGREGGVDIISLASLHTELPQTTALLIALPETAATVGLIGSEEIALLPPSAVVVNVGRGGVVDEEALYHALKEKRIWAAGLDVWWQYPTKEQPR--MPPSAFPYHELSNCVLSPHRGGAAGIAESETRRMYALAALINEGREGEREGWGNVQGMGNRLCVKKGY 436
            LHVH D     +   + A+ + LL P+I LS G +      +LI+  PT++ +A   P L++++ P+AG P    +   + +P + +HNLHHNA P AE+ L LLLAAAK  +  D+ LR  DW+            E     L+L+GK ALILGYG IGRR+A  C +LGM   A +R       + S P    G L+                             A+L   LP+  AL+I LP T  T GL+G+ E+ LLP  +V+VN+GRG +VDE ALY AL++ R+ AAGLDVW+ YP  E  R   PPSA+P+HEL N ++SPHRGGAA   E+   RM ALAA++N+   G          MGNR+ V+ GY
Sbjct:    4 LHVHFDRP---LTADEAAVLKPLLSPAIALSAGADAPADATILISGRPTREQLAAA-PGLRAVVIPWAGLP-GETRDLLADFPGVAVHNLHHNAAPVAELALMLLLAAAKFALRYDRALRAGDWRPR---------YERATPALLLDGKTALILGYGAIGRRVAAACRALGMTTLATRR-------RLSAPAMDEGTLVH--------------------------PPAALADLLPRAEALIICLPHTPRTDGLLGAAELGLLPSHSVLVNIGRGRIVDEAALYAALRDGRLRAAGLDVWYSYPPDEAARAAWPPSAYPFHELDNVIMSPHRGGAAD--ETARLRMTALAAMLNDAARGRE--------MGNRVDVEVGY 326
The following BLAST results are available for this feature:
BLAST of NO23G01370.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_095043880.16.300e-6040.00hydroxyacid dehydrogenase [Candidatus Promineofilu... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01370NO23G01370Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01370.2NO23G01370.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01370.2.cds1NO23G01370.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01370.2.cds2NO23G01370.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01370.2.cds3NO23G01370.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01370.2.cds4NO23G01370.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01370.2 ID=NO23G01370.2|Name=NO23G01370.2|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp
ACAGCCTACCCTGAGACACATAAATACAGCCAGCATGACTGCTTTCTCCT
CCTTGAGCAATAGCAGCGGCAGTCCCTGCAGTATTGGTGCAACCACCCTC
CTCCTTACCACGGCCTGCGCCGCCACGACTGTCGCCGCCGTACTCCTTTG
CAACAGAAAGCACCGCCTTTACCAGCGACGACCTTTTCTCCGTCCTCTTC
CTCCGCTTCACGTTCACTTGGATCTGAAAGGTGTCTCGGTCCGTGAGAGC
GACTTGGCTCTGTTCCGCTCATTATTGGATCCCTCGATCACTCTGTCACA
TGGCCAGGAGGTTGATCCACGGACACAGTTGTTGATAGCCAATTTCCCCA
CGAAAGACACAATCGCCCGCCTTCAGCCCACCCTCCAATCCCTCATCTTC
CCTTTCGCCGGCGCCCCCCTCTCCTTCCTTCAGCACTGCGCCTCCGCCTA
CCCCTCTCTCACCCTACACAATCTCCACCACAACGCCCCTCCGACCGCCG
AGATGGGCCTGGCCCTACTCCTTGCCGCTGCGAAGCTCCTCATCCCCGCC
GACCAGCAGCTGCGGGGAAACGACTGGAAAGCAGGCGGAGGACCGTCGCT
AGCTATCACCCTTCAAGAAGAATATGCAGGCCAGCTCATCTTGGAAGGGA
AGCAAGCCCTCATCCTTGGATATGGCGTCATCGGCCGGCGTCTTGCCCGA
GGCTGCCTCTCCCTTGGCATGGCCGTCAAAGCCGTCAAGAGGGAGGGCTG
GAGGGAGGGCGGGAAGGAGAGCGAGCCAGGTCAAGCCGCAGGAGGGCTAA
TGAGGTGGATGACAGGATTGTTCCAGCCTCTGGCAAAGGAGGGAGGGAGG
GAGGAAGGGAGAGAGGGAGGGGTCGACATTATCTCGCTTGCGTCCTTGCA
CACCGAGCTTCCGCAGACAACGGCGCTCCTTATCGCCCTTCCGGAGACAG
CAGCAACTGTAGGACTGATTGGCTCGGAAGAAATAGCTCTCTTGCCTCCT
TCTGCTGTCGTGGTGAACGTGGGGAGAGGTGGTGTGGTGGACGAGGAGGC
GCTTTACCATGCGCTCAAGGAGAAGCGGATATGGGCTGCAGGATTGGATG
TCTGGTGGCAGTACCCCACCAAAGAGCAGCCTCGCATGCCTCCCTCCGCC
TTTCCCTACCACGAGCTTTCAAACTGCGTCCTAAGCCCGCACCGAGGGGG
CGCCGCCGGGATCGCGGAGAGTGAAACCAGACGCATGTATGCCTTGGCGG
CTTTGATCAATGAAGGGAGGGAGGGAGAGAGGGAGGGGTGGGGGAATGTG
CAGGGAATGGGGAACCGACTGTGCGTGAAGAAGGGCTACTAGATGCAAGG
TTAAACAGATATGCGAAGAAATAAAGTAATAGCCATCAAGAAACAATAAA
CGCGTCATTTGTACGTAACGCCATGTTAATGGGCCAAGGAGAGGTATGCG
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protein sequence of NO23G01370.2

>NO23G01370.2-protein ID=NO23G01370.2-protein|Name=NO23G01370.2|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MTAFSSLSNSSGSPCSIGATTLLLTTACAATTVAAVLLCNRKHRLYQRRP
FLRPLPPLHVHLDLKGVSVRESDLALFRSLLDPSITLSHGQEVDPRTQLL
IANFPTKDTIARLQPTLQSLIFPFAGAPLSFLQHCASAYPSLTLHNLHHN
APPTAEMGLALLLAAAKLLIPADQQLRGNDWKAGGGPSLAITLQEEYAGQ
LILEGKQALILGYGVIGRRLARGCLSLGMAVKAVKREGWREGGKESEPGQ
AAGGLMRWMTGLFQPLAKEGGREEGREGGVDIISLASLHTELPQTTALLI
ALPETAATVGLIGSEEIALLPPSAVVVNVGRGGVVDEEALYHALKEKRIW
AAGLDVWWQYPTKEQPRMPPSAFPYHELSNCVLSPHRGGAAGIAESETRR
MYALAALINEGREGEREGWGNVQGMGNRLCVKKGY*
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mRNA from alignment at chr23:494952..496817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01370.2 ID=NO23G01370.2|Name=NO23G01370.2|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at chr23:494952..496817- (Nannochloropsis oceanica)
ACAGCCTACCCTGAGACACATAAATACAGCCAGCATGACTGCTTTCTCCT
CCTTGAGCAATAGCAGCGGCAGTCCCTGCAGTATTGGTGCAACCACCCTC
CTCCTTACCACGGCCTGCGCCGCCACGACTGTCGCCGCCGTACTCCTTTG
CAACAGAAAGCACCGCCTTTACCAGCGACGACCTTTTCTCCGTCCTCTTC
CTCCGCTTCACGTTCACTTGGATCTGAAAGGTGTCTCGGTCCGTGAGAGC
GACTTGGCTCTGTTCCGCTCATTATTGGATCCCTCGATCACTCTGTCACA
TGGCCAGGAGGTTGATCCACGGACACAGTTGTTGATAGCCAATTTCCCCA
CGAAAGGTGAAGAGGAGGGAAGGCGGAAGGGAGAAAACATTTATTATAGG
TCGAGTAACGAGGGCGAAAGTCTGTCTATCACCTCTTATCAGAGCGAGGG
AAAGACGTCTGTCTTACCGTGATTCCTTATTTCTCTCTCCATCTCCTACC
CTCCCTTGGTAAAGACACAATCGCCCGCCTTCAGCCCACCCTCCAATCCC
TCATCTTCCCTTTCGCCGGCGCCCCCCTCTCCTTCCTTCAGCACTGCGCC
TCCGCCTACCCCTCTCTCACCCTACACAATCTCCACCACAACGCCCCTCC
GACCGCCGAGATGGGCCTGGCCCTACTCCTTGCCGCTGCGAAGCTCCTCA
TCCCCGCCGACCAGCAGCTGCGGGGAAACGACTGGAAAGCAGGCGGAGGA
CCGTCGCTAGCTATCACCCTTCAAGAAGAATATGCAGGTGCGTATCTACC
ACCATCACCACCTTCAAAATAAGGCCAAGGACGGATCACCTCCACCCACC
CACACCCCTTAATCCCTTGATCCCTTCCTGCTCATGCAGGCCAGCTCATC
TTGGAAGGGAAGCAAGCCCTCATCCTTGGATATGGCGTCATCGGCCGGCG
TCTTGCCCGAGGCTGCCTCTCCCTTGGCATGGCCGTCAAAGCCGTCAAGA
GGGAGGGCTGGAGGGAGGGCGGGAAGGAGAGCGAGCCAGGTCAAGCCGCA
GGAGGGCTAATGAGGTGGATGACAGGATTGTTCCAGCCTCTGGCAAAGGA
GGGAGGGAGGGAGGAAGGGAGAGAGGGAGGGGTCGACATTATCTCGCTTG
CGTCCTTGCACACCGAGCTTCCGCAGACAACGGCGCTCCTTATCGCCCTT
CCGGAGACAGCAGCAACTGTAGGACTGATTGGCTCGGAAGAAATAGCTCT
CTTGCCTCCTTCTGCTGTCGTGGTGAACGTGGGGAGAGGTGGTGTGGTGG
ACGAGGAGGCGCTTTACCATGCGCTCAAGGAGAAGCGGATATGGGCTGCA
GGATTGGATGTCTGGTGGCAGGTGAGGGGGATGGAGGAAGGGAGGATGGG
ATGGATTTTACGCTCTATTAAAATGGATACTTTAAGTTGTCCACGCTTCT
AATTCACACCCACCGTTCCTCCGTCCCCATCTCCCTTTCTTCCCTCCTTC
CCTCTCTCCCTCTCTTCACTGAGGCAGTACCCCACCAAAGAGCAGCCTCG
CATGCCTCCCTCCGCCTTTCCCTACCACGAGCTTTCAAACTGCGTCCTAA
GCCCGCACCGAGGGGGCGCCGCCGGGATCGCGGAGAGTGAAACCAGACGC
ATGTATGCCTTGGCGGCTTTGATCAATGAAGGGAGGGAGGGAGAGAGGGA
GGGGTGGGGGAATGTGCAGGGAATGGGGAACCGACTGTGCGTGAAGAAGG
GCTACTAGATGCAAGGTTAAACAGATATGCGAAGAAATAAAGTAATAGCC
ATCAAGAAACAATAAACGCGTCATTTGTACGTAACGCCATGTTAATGGGC
CAAGGAGAGGTATGCG
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Coding sequence (CDS) from alignment at chr23:494952..496817-

>NO23G01370.2 ID=NO23G01370.2|Name=NO23G01370.2|organism=Nannochloropsis oceanica|type=CDS|length=1308bp|location=Sequence derived from alignment at chr23:494952..496817- (Nannochloropsis oceanica)
ATGACTGCTTTCTCCTCCTTGAGCAATAGCAGCGGCAGTCCCTGCAGTAT
TGGTGCAACCACCCTCCTCCTTACCACGGCCTGCGCCGCCACGACTGTCG
CCGCCGTACTCCTTTGCAACAGAAAGCACCGCCTTTACCAGCGACGACCT
TTTCTCCGTCCTCTTCCTCCGCTTCACGTTCACTTGGATCTGAAAGGTGT
CTCGGTCCGTGAGAGCGACTTGGCTCTGTTCCGCTCATTATTGGATCCCT
CGATCACTCTGTCACATGGCCAGGAGGTTGATCCACGGACACAGTTGTTG
ATAGCCAATTTCCCCACGAAAGACACAATCGCCCGCCTTCAGCCCACCCT
CCAATCCCTCATCTTCCCTTTCGCCGGCGCCCCCCTCTCCTTCCTTCAGC
ACTGCGCCTCCGCCTACCCCTCTCTCACCCTACACAATCTCCACCACAAC
GCCCCTCCGACCGCCGAGATGGGCCTGGCCCTACTCCTTGCCGCTGCGAA
GCTCCTCATCCCCGCCGACCAGCAGCTGCGGGGAAACGACTGGAAAGCAG
GCGGAGGACCGTCGCTAGCTATCACCCTTCAAGAAGAATATGCAGGCCAG
CTCATCTTGGAAGGGAAGCAAGCCCTCATCCTTGGATATGGCGTCATCGG
CCGGCGTCTTGCCCGAGGCTGCCTCTCCCTTGGCATGGCCGTCAAAGCCG
TCAAGAGGGAGGGCTGGAGGGAGGGCGGGAAGGAGAGCGAGCCAGGTCAA
GCCGCAGGAGGGCTAATGAGGTGGATGACAGGATTGTTCCAGCCTCTGGC
AAAGGAGGGAGGGAGGGAGGAAGGGAGAGAGGGAGGGGTCGACATTATCT
CGCTTGCGTCCTTGCACACCGAGCTTCCGCAGACAACGGCGCTCCTTATC
GCCCTTCCGGAGACAGCAGCAACTGTAGGACTGATTGGCTCGGAAGAAAT
AGCTCTCTTGCCTCCTTCTGCTGTCGTGGTGAACGTGGGGAGAGGTGGTG
TGGTGGACGAGGAGGCGCTTTACCATGCGCTCAAGGAGAAGCGGATATGG
GCTGCAGGATTGGATGTCTGGTGGCAGTACCCCACCAAAGAGCAGCCTCG
CATGCCTCCCTCCGCCTTTCCCTACCACGAGCTTTCAAACTGCGTCCTAA
GCCCGCACCGAGGGGGCGCCGCCGGGATCGCGGAGAGTGAAACCAGACGC
ATGTATGCCTTGGCGGCTTTGATCAATGAAGGGAGGGAGGGAGAGAGGGA
GGGGTGGGGGAATGTGCAGGGAATGGGGAACCGACTGTGCGTGAAGAAGG
GCTACTAG
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Synonyms
Publications