NO23G01290.1, NO23G01290.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01290.1
Unique NameNO23G01290.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length987
Alignment locationchr23:464199..466373 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:464199..466373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01290.1 vs.
Match: KOO31539.1 (heme oxygenase 1 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 224.9 bits (572), Expect = 3.500e-55
Identity = 113/216 (52.31%), Postives = 147/216 (68.06%), Query Frame = 0 
Query:  106 SFVQTELRKEAMRLHTREQAPREGEAKEEGVEQSPFQQWAPTRQDYLQFLVDSKLVYETFDALLTAQPSLAPFRHTGLERAGPLEKDIAWFAATYAGEVHVPPVGPYGQAYAQFLKEL-APKSLPALMCHYYNFFFAHTAGGRMIGKKMSSALLDGHELHFYQWEGSDVKEKLDAVRRSLDSMAAGWSREEKDECVGETKNTFTKGGSLLAYIARP 321
            SFVQTE+R  AM LHTR+QAPREG+       Q P   W PTR DYLQFLVDS+ VY T + ++      A FR +GLER   L+KDIAWFAAT+ GE   P V   G+ YA  L+++ A   L   +CH+YNF+FAHTAGGRMIGK+M+  LLDGH L FYQW+G   +  L  +R  +D++ AGWSRE+KD+C+ ET N+F  GG+++ +I+ P
Sbjct:   52 SFVQTEMRGAAMALHTRDQAPREGKQPA----QRPMSSWQPTRADYLQFLVDSRKVYRTLEEIVEETEMFASFRASGLERGAALDKDIAWFAATH-GEKE-PAVKSQGETYAAELRKMVADGELERFVCHFYNFYFAHTAGGRMIGKRMAGMLLDGHTLEFYQWDGDVDQVLLPGLRTKIDALVAGWSREQKDKCLAETANSFKGGGAMMQHISPP 261
The following BLAST results are available for this feature:
BLAST of NO23G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
KOO31539.13.500e-5552.31heme oxygenase 1 [Chrysochromulina sp. CCMP291][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01290NO23G01290Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01290.1NO23G01290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01290.1.cds1NO23G01290.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01290.1.cds2NO23G01290.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01290.1.cds3NO23G01290.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01290.1.cds4NO23G01290.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01290.1.cds5NO23G01290.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01290.1.cds6NO23G01290.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01290.1 ID=NO23G01290.1|Name=NO23G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
ATGCAGCCTCCTCCCAGCAACAACAGCAGCAGCAGCGGCATCAACAACAA
GAGCAGGGGCAGCATTAGCACCAGCAGCAGGAGAAGAGCACTGCGCCTTT
TGACCACCACGGCGGCCACCTTGACGATCGCGAGCTTGGTTGGAAGGACT
GATGCCTTCCTTCCTCCCATCCCCTCGTCTACCTCTATCCGTCTCCATGC
TACTCCTACAAGCACCTCTTCCTCCTCGCCCGCTACTGCTGCCCCTCCCA
AACCGGCCCACGGCCACGGCGGCGGTGGACACGGGGGCATGATGGGCGGT
CCCATCGACCCCAATTCCTTCGTTCAAACAGAGCTGAGGAAGGAGGCCAT
GCGATTACACACCCGAGAGCAGGCCCCACGGGAAGGCGAGGCGAAAGAGG
AGGGAGTCGAGCAAAGTCCGTTCCAGCAGTGGGCACCGACGCGACAAGAC
TACCTCCAGTTCCTCGTCGATTCCAAGCTGGTATACGAGACGTTCGACGC
CCTCCTGACCGCCCAGCCCTCTCTGGCCCCCTTCCGCCACACGGGCCTGG
AGCGCGCGGGACCTCTAGAGAAGGACATTGCCTGGTTTGCCGCCACTTAC
GCAGGGGAAGTGCACGTCCCTCCCGTCGGCCCGTACGGCCAGGCCTACGC
GCAATTTTTGAAGGAGTTGGCGCCCAAGAGCCTCCCCGCGCTAATGTGCC
ATTATTACAATTTCTTCTTCGCCCACACGGCCGGGGGCCGCATGATCGGG
AAGAAAATGTCGTCCGCCCTGCTCGACGGGCATGAGCTGCACTTCTACCA
ATGGGAAGGGAGTGACGTAAAGGAGAAGCTGGACGCAGTCCGGCGGTCGT
TGGATTCGATGGCGGCAGGCTGGAGCAGGGAGGAGAAGGACGAGTGTGTG
GGCGAGACGAAGAACACATTTACCAAGGGAGGCTCCCTCCTCGCGTACAT
CGCACGGCCGCCCAACCAGCGGCCAGAGGTGGCTTAA
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protein sequence of NO23G01290.1

>NO23G01290.1-protein ID=NO23G01290.1-protein|Name=NO23G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MQPPPSNNSSSSGINNKSRGSISTSSRRRALRLLTTTAATLTIASLVGRT
DAFLPPIPSSTSIRLHATPTSTSSSSPATAAPPKPAHGHGGGGHGGMMGG
PIDPNSFVQTELRKEAMRLHTREQAPREGEAKEEGVEQSPFQQWAPTRQD
YLQFLVDSKLVYETFDALLTAQPSLAPFRHTGLERAGPLEKDIAWFAATY
AGEVHVPPVGPYGQAYAQFLKELAPKSLPALMCHYYNFFFAHTAGGRMIG
KKMSSALLDGHELHFYQWEGSDVKEKLDAVRRSLDSMAAGWSREEKDECV
GETKNTFTKGGSLLAYIARPPNQRPEVA*
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mRNA from alignment at chr23:464199..466373-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01290.1 ID=NO23G01290.1|Name=NO23G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2175bp|location=Sequence derived from alignment at chr23:464199..466373- (Nannochloropsis oceanica)
ATGCAGCCTCCTCCCAGCAACAACAGCAGCAGCAGCGGCATCAACAACAA
GAGCAGGGGCAGCATTAGCACCAGCAGCAGGAGAAGAGCACTGCGCCTTT
TGACCACCACGGCGGCCACCTTGACGATCGCGAGCTTGGTTGGAAGGTGT
GGCTTGACTGAAACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCTTTCCCTCCCTCCCGCCCCATTCTCGCGCCC
CTCTCTGCCACCATTTCTCACCCACCATCGTCACCTCCACCCTCCTCCCC
TATCTTTTACCATTCCAGGACTGATGCCTTCCTTCCTCCCATCCCCTCGT
CTACCTCTATCCGTCTCCATGCTACTCCTACAAGCACCTCTTCCTCCTCG
CCCGCTACTGCTGCCCCTCCCAAACCGGCCCACGGCCACGGCGGCGGTGG
ACACGGGGGCATGATGGGCGGTCCCATCGACCCCAATTCCTTCGTTCAAA
CAGAGCTGAGGAAGGAGGCCATGCGATTACACACCCGAGAGCAGGTAGGA
GGAATACACGGACATTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCTCTTTCTCCCTCTTCTTCTCCCTTCCTCCCTCCCTTCTCAGCCAGGA
GCAATCCTACATAGATATCGACATCTTCTCCTCCCATCATCCCTCCCTCC
ACCCCTTCTTCCCCTCTAGGCCCCACGGGAAGGCGAGGCGAAAGAGGAGG
GAGTCGAGCAAAGTCCGTTCCAGCAGTGGGCACCGACGCGACAAGACTAC
CTCCAGTTCCTCGTCGATTCCAAGCTGGTACGTCCTTACCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCTTCCCTCCCCCCTTCC
CTCATTTCCTCTTCCTCTCTATCACCCCTTTCTCCCTTTAGCTTCCATGC
ACGTGGTTCACCTCCCTCCCTCCCTCCCTTCCTCCCCCCCTCCCTTTCTC
CCTCCCCCTCTCCCTACCTAGGTATACGAGACGTTCGACGCCCTCCTGAC
CGCCCAGCCCTCTCTGGCCCCCTTCCGCCACACGGGCCTGGAGCGCGCGG
GACCTCTAGAGAAGGACATTGCCTGGTTTGCCGCCACTTACGCAGGGGAA
GTGCACGTCCCTCCCGTCGGCCCGTACGGCCAGGCCTACGCGCAATTTTT
GAAGGAGGTGAGGGAAAGGGGAAGGGGGAGAGGAGGGGGATCGGAAGGAA
GGAAAATGAGAGGGAGGAATGGAGGGATCAGTTCGTTTTGCACCTGTTTG
CTCTGTACTAACCTACCTACCAACCATCCCTCCCCTCCCTCCCTCCCTCC
CTCCCCCCTCCCAGTTGGCGCCCAAGAGCCTCCCCGCGCTAATGTGCCAT
TATTACAATTTCTTCTTCGCCCACACGGCCGGGGGCCGCATGATCGGGAA
GAAAATGTCGTCCGCCCTGCTCGGTACGTGCCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCCTCCCTCCGTCCTTGTAAATAGATATACACATAC
ACGAGTCAATGCAGGAGGAAAATATGTAATCAGTATCACCTCTACCCCTT
ATCTAATCAACATCACCCCTACCCCTAATCTGATCAGCATCACCCACCCC
TACCCCCAATCTAATCAACATCACCCCTACCCCTAATCTAATCAACATCA
CCCCTACCCCTAACCTGATCAGCATCACCCACCCCTACATCTAATCTAAT
CAACATCACCCCTACCCCTAACCTGATCAGCATCACCCCTACCCCTAATC
TGATCAACATCACCCCTACCCCTAATCTAATCAACATCACCCACCCCTAC
CTCTCTCACCCCCCTCTCGAACCAACAGACGGGCATGAGCTTTGTAGATG
AAGCGACACTAATCAAAACCATCCCAACCCCCTCCCCCTCCCATGCCCCC
TTTAAACCAACAGACGGGCATGAGCTGCACTTCTACCAATGGGAAGGGAG
TGACGTAAAGGAGAAGCTGGACGCAGTCCGGCGGTCGTTGGATTCGATGG
CGGCAGGCTGGAGCAGGGAGGAGAAGGACGAGTGTGTGGGCGAGACGAAG
AACACATTTACCAAGGGAGGCTCCCTCCTCGCGTACATCGCACGGCCGCC
CAACCAGCGGCCAGAGGTGGCTTAA
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Coding sequence (CDS) from alignment at chr23:464199..466373-

>NO23G01290.1 ID=NO23G01290.1|Name=NO23G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=987bp|location=Sequence derived from alignment at chr23:464199..466373- (Nannochloropsis oceanica)
ATGCAGCCTCCTCCCAGCAACAACAGCAGCAGCAGCGGCATCAACAACAA
GAGCAGGGGCAGCATTAGCACCAGCAGCAGGAGAAGAGCACTGCGCCTTT
TGACCACCACGGCGGCCACCTTGACGATCGCGAGCTTGGTTGGAAGGACT
GATGCCTTCCTTCCTCCCATCCCCTCGTCTACCTCTATCCGTCTCCATGC
TACTCCTACAAGCACCTCTTCCTCCTCGCCCGCTACTGCTGCCCCTCCCA
AACCGGCCCACGGCCACGGCGGCGGTGGACACGGGGGCATGATGGGCGGT
CCCATCGACCCCAATTCCTTCGTTCAAACAGAGCTGAGGAAGGAGGCCAT
GCGATTACACACCCGAGAGCAGGCCCCACGGGAAGGCGAGGCGAAAGAGG
AGGGAGTCGAGCAAAGTCCGTTCCAGCAGTGGGCACCGACGCGACAAGAC
TACCTCCAGTTCCTCGTCGATTCCAAGCTGGTATACGAGACGTTCGACGC
CCTCCTGACCGCCCAGCCCTCTCTGGCCCCCTTCCGCCACACGGGCCTGG
AGCGCGCGGGACCTCTAGAGAAGGACATTGCCTGGTTTGCCGCCACTTAC
GCAGGGGAAGTGCACGTCCCTCCCGTCGGCCCGTACGGCCAGGCCTACGC
GCAATTTTTGAAGGAGTTGGCGCCCAAGAGCCTCCCCGCGCTAATGTGCC
ATTATTACAATTTCTTCTTCGCCCACACGGCCGGGGGCCGCATGATCGGG
AAGAAAATGTCGTCCGCCCTGCTCGACGGGCATGAGCTGCACTTCTACCA
ATGGGAAGGGAGTGACGTAAAGGAGAAGCTGGACGCAGTCCGGCGGTCGT
TGGATTCGATGGCGGCAGGCTGGAGCAGGGAGGAGAAGGACGAGTGTGTG
GGCGAGACGAAGAACACATTTACCAAGGGAGGCTCCCTCCTCGCGTACAT
CGCACGGCCGCCCAACCAGCGGCCAGAGGTGGCTTAA
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Synonyms
Publications