NO23G01040.1, NO23G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G01040.1
Unique NameNO23G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1461
Alignment locationchr23:386593..388210 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:386593..388210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G01040.1 vs.
Match: XP_019632669.1 (PREDICTED: endoribonuclease LACTB2-like [Branchiostoma belcheri])

HSP 1 Score: 187.6 bits (475), Expect = 9.300e-44
Identity = 138/364 (37.91%), Postives = 182/364 (50.00%), Query Frame = 0 
Query:  114 LPNIEKLSKRVIRILGLNPGAHTLQGTNTYLVGTGKARLLIDTGE-GREEYIPLLRQALKEAGAETIQAILLTHHHYDHIGGLRHVRAAFPPSSSSSSSSPSYASSSSAATTTTTTIPAYKWLLSHESNGSSSSSSSTSSSSPCCGSNSTTTTTSSSSSSSALLPLHDNQIFRTQGATLRVLYTPGHTTDHCSFLLEEDDDEDEDEGGTAEGSLKKALQKKEGGKNGGKGALFSGDCVLGHGTTVFDDLKTYMESLGRLRREGGCVEVIYPGHGKEIKEGGMGVIDAYISHRVFREKQIIGVLEKRKGVTEGGGGGGGREGGRGMTPLQIVKEVYECSLPAAVVPSAQWNVEHHLDKLEKEGKV 477
            +P I+ LS RV R+LGLNPG  TL+GTNTYLVGTGK+R+LIDTG+ G   Y+P LR+AL+ +G   +Q IL+TH H+DH+GG+  +  AF   S    S                 +P          N S   S  T   SP  G  +T       S       L +  + +T+GATL+ +YTPGHT DH + LLEE++                              A+FSGDC+LG GTTVF+DL  YM+SL +L   G     IYPGHG  I +     I  YI+HR  RE QI+  L+K                   +T ++IVK VY    P  +  +A  NV HHL KL K+G +
Sbjct:    5 IPKIDVLSSRVTRVLGLNPGPFTLRGTNTYLVGTGKSRILIDTGDAGIPGYVPNLREALQSSGT-ALQEILITHWHHDHVGGIPAIWQAFQLVSPFRISK----------------LPR---------NPSGGGSKDTEGYSPPQGEETTGVPGVGYSY------LREGDVIKTEGATLKAIYTPGHTDDHMALLLEEEN------------------------------AVFSGDCILGEGTTVFEDLYDYMKSLQKL--AGFKPATIYPGHG-PIVQNATEKIQEYINHRNMRESQILAALQKASKTP--------------LTAMEIVKMVY-VDTPEHLHKAAAGNVTHHLHKLVKDGVI 288
The following BLAST results are available for this feature:
BLAST of NO23G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_019632669.19.300e-4437.91PREDICTED: endoribonuclease LACTB2-like [Branchios... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G01040NO23G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G01040.1NO23G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G01040.1.cds1NO23G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G01040.1.cds2NO23G01040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G01040.1 ID=NO23G01040.1|Name=NO23G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
ATGTCTCTCGGCAGCCGCAATAGCGACAACGATAATAGCAACAGCAATAG
CCTCTTTCGGGAGCTACCTGTAATTCTCCTCTCTTTCTTTATTACCCTCG
TGGGCCGTGCATACCGTTATTGGTCCCCTTCCTTGCACGCCCACCCAATC
TATAACCGGCTGCGACAACGTCTTACATCCTCCCCGTCCTCCTCCTCTTC
TTGTTTCTCTTCTTCCTCCTCCTCCTCTGCTTCCCCCTGCAGCTGCTCTT
CCACTGCACATCAGCAGACGCATCACCCATCTTCTTCATCAAAGCCAGGA
CAGACAAAAGCAAAAGCCATGCCACCAGCATATCCCCACCTCCCCAACAT
AGAAAAACTCAGCAAACGCGTAATTCGTATACTGGGTCTCAACCCTGGTG
CTCACACTCTGCAAGGCACGAACACATACCTCGTGGGGACCGGGAAAGCT
CGTTTGCTCATCGATACCGGCGAGGGTAGAGAAGAATATATTCCTCTGCT
CAGACAAGCCTTAAAGGAGGCAGGTGCCGAGACGATCCAAGCCATTCTCC
TAACTCATCACCACTACGACCACATCGGTGGCCTGCGCCACGTCCGTGCC
GCCTTCCCTCCCTCATCATCATCTTCCTCCTCCTCCCCCTCCTATGCTTC
CTCTTCCTCCGCCGCCACCACCACCACCACCACCATCCCCGCCTATAAGT
GGCTCTTATCGCACGAATCAAATGGCAGCAGCAGCTCCAGCAGCTCGACC
AGCTCCAGCAGTCCCTGCTGCGGAAGCAACTCAACCACCACCACCACCTC
CTCCTCCTCCTCCTCCTCTGCTCTCCTGCCTCTGCACGACAACCAGATAT
TTCGCACCCAAGGTGCAACCCTGCGTGTCCTCTACACCCCCGGACATACC
ACTGACCATTGCTCCTTCCTCCTAGAGGAGGACGATGACGAGGACGAGGA
CGAAGGAGGGACGGCCGAAGGGTCTCTAAAGAAGGCTCTGCAGAAAAAGG
AGGGAGGGAAGAACGGAGGGAAGGGAGCCTTGTTCTCCGGGGATTGTGTG
CTGGGGCACGGAACGACAGTGTTCGACGACTTGAAGACGTATATGGAGAG
CTTGGGGAGGTTGAGGAGGGAGGGAGGGTGCGTGGAAGTGATTTACCCAG
GGCATGGTAAGGAGATTAAGGAAGGGGGAATGGGCGTGATTGACGCTTAC
ATCAGTCATCGAGTATTTAGGGAGAAGCAGATTATAGGGGTGTTGGAGAA
GAGGAAAGGAGTAACGGAGGGAGGAGGGGGAGGGGGAGGGAGGGAAGGAG
GGAGGGGGATGACGCCGTTGCAGATCGTGAAGGAGGTGTATGAGTGCAGT
TTGCCGGCGGCAGTGGTGCCCTCGGCTCAGTGGAATGTGGAGCATCATTT
GGACAAGTTGGAGAAAGAGGGAAAGGTCCGTCAGCGTCTTGGCTTCTGGC
AGGCGGTGTGA
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protein sequence of NO23G01040.1

>NO23G01040.1-protein ID=NO23G01040.1-protein|Name=NO23G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MSLGSRNSDNDNSNSNSLFRELPVILLSFFITLVGRAYRYWSPSLHAHPI
YNRLRQRLTSSPSSSSSCFSSSSSSSASPCSCSSTAHQQTHHPSSSSKPG
QTKAKAMPPAYPHLPNIEKLSKRVIRILGLNPGAHTLQGTNTYLVGTGKA
RLLIDTGEGREEYIPLLRQALKEAGAETIQAILLTHHHYDHIGGLRHVRA
AFPPSSSSSSSSPSYASSSSAATTTTTTIPAYKWLLSHESNGSSSSSSST
SSSSPCCGSNSTTTTTSSSSSSSALLPLHDNQIFRTQGATLRVLYTPGHT
TDHCSFLLEEDDDEDEDEGGTAEGSLKKALQKKEGGKNGGKGALFSGDCV
LGHGTTVFDDLKTYMESLGRLRREGGCVEVIYPGHGKEIKEGGMGVIDAY
ISHRVFREKQIIGVLEKRKGVTEGGGGGGGREGGRGMTPLQIVKEVYECS
LPAAVVPSAQWNVEHHLDKLEKEGKVRQRLGFWQAV*
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mRNA from alignment at chr23:386593..388210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G01040.1 ID=NO23G01040.1|Name=NO23G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1618bp|location=Sequence derived from alignment at chr23:386593..388210+ (Nannochloropsis oceanica)
ATGTCTCTCGGCAGCCGCAATAGCGACAACGATAATAGCAACAGCAATAG
CCTCTTTCGGGAGCTACCTGTAATTCTCCTCTCTTTCTTTATTACCCTCG
TGGGCCGTGCATACCGTTATTGGTCCCCTTCCTTGCACGCCCACCCAATC
TATAACCGGCTGCGACAACGTCTTACATCCTCCCCGTCCTCCTCCTCTTC
TTGTTTCTCTTCTTCCTCCTCCTCCTCTGCTTCCCCCTGCAGCTGCTCTT
CCACTGCACATCAGCAGACGCATCACCCATCTTCTTCATCAAAGCCAGGA
CAGACAAAAGCAAAAGCCATGCCACCAGCATATCCCCACCTCCCCAACAT
AGAAAAACTCAGCAAACGCGTAATTCGTATACTGGGTCTCAACCCTGGTG
CTCACACTCTGCAAGGCACGAACACATACCTCGTGGGGACCGGGAAAGCT
CGTTTGCTCATCGATACCGGCGAGGGTAGAGAAGAATATATTCCTCTGCT
CAGACAAGCCTTAAAGGAGGCAGGTGCCGAGACGATCCAAGCCATTCTCC
TAACTCATCACCACTACGACCACATCGGTGGCCTGCGCCACGTCCGTGCC
GCCTTCCCTCCCTCATCATCATCTTCCTCCTCCTCCCCCTCCTATGCTTC
CTCTTCCTCCGCCGCCACCACCACCACCACCACCATCCCCGCCTATAAGT
GGCTCTTATCGCACGAATCAAATGGCAGCAGCAGCTCCAGCAGCTCGACC
AGCTCCAGCAGTCCCTGCTGCGGAAGCAACTCAACCACCACCACCACCTC
CTCCTCCTCCTCCTCCTCTGCTCTCCTGCCTCTGCACGACAACCAGATAT
TTCGCACCCAAGGTGCAACCCTGCGTGTCCTCTACACCCCCGGACATACC
ACTGACCATTGCTCCTTCCTCCTAGAGGAGGACGATGACGAGGACGAGGA
CGAAGGAGGGACGGCCGAAGGGTCTCTAAAGAAGGCTCTGCAGAAAAAGG
AGGGAGGGAAGAACGGAGGGAAGGGAGCCTTGTTCTCCGGGGATTGTGTG
CTGGGGCACGGAACGACAGTGTTCGACGACTTGAAGACGTATATGGAGAG
CTTGGGGAGGTTGAGGAGGGAGGGAGGGTGCGTGGAAGTGATTTACCCAG
GGCATGGTAAGGAGATTAAGGAAGGGGGAATGGGCGTGATTGACGCTTAC
ATCAGTCATCGAGTATTTAGGGAGAAGCAGATTATAGGGGTGTTGGAGAA
GAGGAAAGGAGTAACGGAGGGAGGAGGGGGAGGGGGAGGGAGGGAAGGAG
GGAGGGGGATGACGCCGTTGCAGATCGTGAAGGAGGTGTATGAGTGCAGT
TTGCCGGCGGCAGTGGTGAGTTGGGTGGTAGGGGAGGAAGGAGGGAGGCA
GAACGTGTAGACATCGAAATTGCTTTTGTCCCCTGTTCCCCCCCTTCTTT
CCGATTTCCGCGCCCTGTTTCTCTTACTCGTCCCTCTCGTACGTCCTATA
TGGACAATTGTCACTCACACAGGTGCCCTCGGCTCAGTGGAATGTGGAGC
ATCATTTGGACAAGTTGGAGAAAGAGGGAAAGGTCCGTCAGCGTCTTGGC
TTCTGGCAGGCGGTGTGA
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Coding sequence (CDS) from alignment at chr23:386593..388210+

>NO23G01040.1 ID=NO23G01040.1|Name=NO23G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=1461bp|location=Sequence derived from alignment at chr23:386593..388210+ (Nannochloropsis oceanica)
ATGTCTCTCGGCAGCCGCAATAGCGACAACGATAATAGCAACAGCAATAG
CCTCTTTCGGGAGCTACCTGTAATTCTCCTCTCTTTCTTTATTACCCTCG
TGGGCCGTGCATACCGTTATTGGTCCCCTTCCTTGCACGCCCACCCAATC
TATAACCGGCTGCGACAACGTCTTACATCCTCCCCGTCCTCCTCCTCTTC
TTGTTTCTCTTCTTCCTCCTCCTCCTCTGCTTCCCCCTGCAGCTGCTCTT
CCACTGCACATCAGCAGACGCATCACCCATCTTCTTCATCAAAGCCAGGA
CAGACAAAAGCAAAAGCCATGCCACCAGCATATCCCCACCTCCCCAACAT
AGAAAAACTCAGCAAACGCGTAATTCGTATACTGGGTCTCAACCCTGGTG
CTCACACTCTGCAAGGCACGAACACATACCTCGTGGGGACCGGGAAAGCT
CGTTTGCTCATCGATACCGGCGAGGGTAGAGAAGAATATATTCCTCTGCT
CAGACAAGCCTTAAAGGAGGCAGGTGCCGAGACGATCCAAGCCATTCTCC
TAACTCATCACCACTACGACCACATCGGTGGCCTGCGCCACGTCCGTGCC
GCCTTCCCTCCCTCATCATCATCTTCCTCCTCCTCCCCCTCCTATGCTTC
CTCTTCCTCCGCCGCCACCACCACCACCACCACCATCCCCGCCTATAAGT
GGCTCTTATCGCACGAATCAAATGGCAGCAGCAGCTCCAGCAGCTCGACC
AGCTCCAGCAGTCCCTGCTGCGGAAGCAACTCAACCACCACCACCACCTC
CTCCTCCTCCTCCTCCTCTGCTCTCCTGCCTCTGCACGACAACCAGATAT
TTCGCACCCAAGGTGCAACCCTGCGTGTCCTCTACACCCCCGGACATACC
ACTGACCATTGCTCCTTCCTCCTAGAGGAGGACGATGACGAGGACGAGGA
CGAAGGAGGGACGGCCGAAGGGTCTCTAAAGAAGGCTCTGCAGAAAAAGG
AGGGAGGGAAGAACGGAGGGAAGGGAGCCTTGTTCTCCGGGGATTGTGTG
CTGGGGCACGGAACGACAGTGTTCGACGACTTGAAGACGTATATGGAGAG
CTTGGGGAGGTTGAGGAGGGAGGGAGGGTGCGTGGAAGTGATTTACCCAG
GGCATGGTAAGGAGATTAAGGAAGGGGGAATGGGCGTGATTGACGCTTAC
ATCAGTCATCGAGTATTTAGGGAGAAGCAGATTATAGGGGTGTTGGAGAA
GAGGAAAGGAGTAACGGAGGGAGGAGGGGGAGGGGGAGGGAGGGAAGGAG
GGAGGGGGATGACGCCGTTGCAGATCGTGAAGGAGGTGTATGAGTGCAGT
TTGCCGGCGGCAGTGGTGCCCTCGGCTCAGTGGAATGTGGAGCATCATTT
GGACAAGTTGGAGAAAGAGGGAAAGGTCCGTCAGCGTCTTGGCTTCTGGC
AGGCGGTGTGA
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Synonyms
Publications