NO23G00950.1, NO23G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00950.1
Unique NameNO23G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1624
Alignment locationchr23:357899..359522 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:357899..359522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00950.1 vs.
Match: EWM22945.1 (flagellar hook-associated protein [Nannochloropsis gaditana])

HSP 1 Score: 488.8 bits (1257), Expect = 2.100e-134
Identity = 281/529 (53.12%), Postives = 337/529 (63.71%), Query Frame = 0 
Query:   11 DDSDIFAVTAARGFLPVRDPLRRLPTQTT-LSTSPPL-LFDVLEALGDDLPKLLLCGNATLRQEIETRLNAVVAKTLPSSLSSEVEERLLLLLSFISHAYVWGRSPSSTTTST-----------VHDCDSIPTPLADLWIEVARRRGRPPILTYSSFNLFNWRRMDKTGPVALGNIACLNNFLGGMDEEWFRCVHIHIEAESVGSLRAMLRYVEESEKLNSSNSTNNSG---NRSGIWSSSGKTPL--------LLSLLEEALSEITICLATIRAVLARMGEGCDPHIYYSRVRQYMSGWRNNPALPHGLLYGKEKEGKTEGGTKEDVKGQKEKAAAGLRERRQYYGETGAQSCILPAVDAFLGIIHEMDSMREYLLEMRDYVPRAHLAFLLRLESLHPSVREIVAQQEDGRQVGRGGERGGKGGTGEREISGAVVEISSDHERTLPTAYDQAVKALARFRALHLHAADTYINKPA--ESLGTGGSDFRVYLRKHHRDTKAQLLQSRERGSDGVGTEEEDREVGEPGVK 514
            ++ ++FAVTAARGFLPVRDPL RL   T+ LS + PL LF VLE LGDDLPKLLLCG+ T+R +IE+RL+AV   TLP  L+S+ EERL LLLSF++HAYVWGR+PS++T  +           +HDCD IP  LADLWIEVARRRGRPPILTY++FNLFNWRR+D + PV LGNIACLNNFLGG DEEWFRCVH+ IE++S G++ A+LRYVE+SE L  +     SG   +R  +    G+           L + L EAL EI  CL TI+ VL RM E CDPHIYY RVR YMSGWRNNP+LP GL YG E                         E RQYYGETGAQSCILPA DAFLGI HE DSMREYLL+MRDY+P AHL+FLLRLE+  P VR++V                 K G      + A+  +++              +AL       LHAADTYI KPA  E LGTGGSDFRVYLRKH  +TK   +  +   S  +G +E  +   EP  K
Sbjct:    2 NNDEVFAVTAARGFLPVRDPLSRLTAGTSPLSLTSPLHLFHVLEGLGDDLPKLLLCGSTTVRAQIESRLSAVAMLTLPPVLTSDEEERLFLLLSFVAHAYVWGRTPSTSTIMSDSEKDPTSGGALHDCDWIPKSLADLWIEVARRRGRPPILTYATFNLFNWRRLDASKPVELGNIACLNNFLGGQDEEWFRCVHVEIESQSAGAVGAILRYVEQSEALKGNRGEGGSGCSLDRGNVDGGEGERSSNNDWDGLPLAAPLVEALEEIQACLCTIQRVLRRMNEACDPHIYYHRVRLYMSGWRNNPSLPKGLRYGPE------------------------GEHRQYYGETGAQSCILPAFDAFLGIEHEKDSMREYLLDMRDYMPPAHLSFLLRLEAHRPLVRDVVK----------------KRGLLRAAYNDAIKALAN-------------FRALH------LHAADTYIRKPAPTEQLGTGGSDFRVYLRKHREETKMHAISLK---STDLGLKEGSKMAIEPQCK 468
The following BLAST results are available for this feature:
BLAST of NO23G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22945.12.100e-13453.12flagellar hook-associated protein [Nannochloropsis... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00950NO23G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00950.1NO23G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00950.1.cds1NO23G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00950.1 ID=NO23G00950.1|Name=NO23G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1624bp
ACAGCCCATGCCTGGCATACAACACCACGAAAACGATGACGACAGTGACA
TCTTTGCCGTGACGGCCGCCCGTGGTTTCTTACCGGTCCGCGACCCTTTG
CGGCGCCTTCCTACGCAGACTACTCTGTCCACCTCCCCACCTCTCTTATT
TGACGTACTTGAAGCACTTGGAGACGACTTGCCCAAGCTCCTACTCTGTG
GGAACGCAACGCTACGACAGGAAATTGAGACCCGATTGAATGCGGTGGTT
GCCAAAACGCTACCATCGTCTCTTTCTTCTGAGGTCGAAGAGCGTTTGCT
CCTCCTTCTCTCCTTCATTTCCCACGCCTATGTTTGGGGGCGGTCTCCCT
CTTCAACTACTACCAGCACTGTGCACGATTGCGACTCCATCCCCACCCCG
CTTGCGGACTTATGGATAGAGGTAGCCCGACGACGGGGCCGACCACCCAT
TTTGACTTACTCGTCTTTCAATTTGTTCAACTGGCGGAGAATGGACAAGA
CGGGGCCTGTCGCCTTGGGAAATATTGCGTGTTTGAATAATTTCTTAGGG
GGGATGGACGAGGAGTGGTTCCGCTGTGTGCATATTCATATAGAAGCTGA
GAGTGTTGGGTCGCTTCGAGCGATGCTTCGGTATGTGGAGGAGAGCGAGA
AGCTCAACAGCAGCAACAGTACCAACAATAGTGGCAATCGCAGTGGCATC
TGGAGTAGTAGCGGCAAAACGCCTCTTCTTCTTTCACTACTAGAAGAAGC
TTTGTCAGAAATCACTATTTGCCTCGCCACCATCCGCGCAGTGCTTGCTC
GTATGGGAGAAGGCTGTGACCCTCACATCTACTACTCTCGGGTCAGGCAA
TATATGAGTGGTTGGCGGAATAATCCTGCCTTACCGCATGGGCTGCTGTA
CGGCAAAGAGAAGGAAGGAAAAACGGAAGGGGGAACAAAAGAAGATGTAA
AAGGGCAAAAGGAAAAAGCTGCTGCAGGATTGAGGGAACGGCGCCAATAT
TATGGAGAGACTGGGGCCCAATCCTGCATCCTCCCCGCTGTCGACGCCTT
CCTCGGGATCATCCACGAAATGGACTCTATGCGTGAGTACCTCTTGGAGA
TGCGTGATTACGTCCCTAGAGCCCACCTTGCCTTTCTCCTCCGCCTGGAA
TCCCTCCATCCATCCGTCCGGGAGATTGTAGCACAACAGGAAGACGGGAG
GCAAGTAGGAAGAGGAGGAGAAAGAGGAGGAAAGGGAGGGACAGGAGAGA
GAGAGATAAGTGGCGCGGTCGTGGAGATTTCCTCCGACCATGAGCGGACT
TTGCCTACAGCATATGACCAGGCTGTCAAGGCCTTGGCCCGTTTTCGTGC
ACTCCATTTACATGCCGCGGACACGTACATCAACAAGCCGGCAGAGTCTC
TGGGCACGGGTGGGTCTGATTTCAGGGTGTACTTACGAAAACATCACAGG
GACACCAAGGCGCAATTATTGCAATCACGTGAAAGGGGTAGTGATGGCGT
TGGCACGGAGGAGGAGGATAGAGAGGTCGGTGAACCCGGTGTGAAAGTGT
AATGTAAATGAATAAGGAATTAAGTCGATCTAAGACTTGATGTCTTTAGA
AGGCCCTTTGATGGCCCGTCTTCA
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protein sequence of NO23G00950.1

>NO23G00950.1-protein ID=NO23G00950.1-protein|Name=NO23G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MPGIQHHENDDDSDIFAVTAARGFLPVRDPLRRLPTQTTLSTSPPLLFDV
LEALGDDLPKLLLCGNATLRQEIETRLNAVVAKTLPSSLSSEVEERLLLL
LSFISHAYVWGRSPSSTTTSTVHDCDSIPTPLADLWIEVARRRGRPPILT
YSSFNLFNWRRMDKTGPVALGNIACLNNFLGGMDEEWFRCVHIHIEAESV
GSLRAMLRYVEESEKLNSSNSTNNSGNRSGIWSSSGKTPLLLSLLEEALS
EITICLATIRAVLARMGEGCDPHIYYSRVRQYMSGWRNNPALPHGLLYGK
EKEGKTEGGTKEDVKGQKEKAAAGLRERRQYYGETGAQSCILPAVDAFLG
IIHEMDSMREYLLEMRDYVPRAHLAFLLRLESLHPSVREIVAQQEDGRQV
GRGGERGGKGGTGEREISGAVVEISSDHERTLPTAYDQAVKALARFRALH
LHAADTYINKPAESLGTGGSDFRVYLRKHHRDTKAQLLQSRERGSDGVGT
EEEDREVGEPGVKV*
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mRNA from alignment at chr23:357899..359522+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00950.1 ID=NO23G00950.1|Name=NO23G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1624bp|location=Sequence derived from alignment at chr23:357899..359522+ (Nannochloropsis oceanica)
ACAGCCCATGCCTGGCATACAACACCACGAAAACGATGACGACAGTGACA
TCTTTGCCGTGACGGCCGCCCGTGGTTTCTTACCGGTCCGCGACCCTTTG
CGGCGCCTTCCTACGCAGACTACTCTGTCCACCTCCCCACCTCTCTTATT
TGACGTACTTGAAGCACTTGGAGACGACTTGCCCAAGCTCCTACTCTGTG
GGAACGCAACGCTACGACAGGAAATTGAGACCCGATTGAATGCGGTGGTT
GCCAAAACGCTACCATCGTCTCTTTCTTCTGAGGTCGAAGAGCGTTTGCT
CCTCCTTCTCTCCTTCATTTCCCACGCCTATGTTTGGGGGCGGTCTCCCT
CTTCAACTACTACCAGCACTGTGCACGATTGCGACTCCATCCCCACCCCG
CTTGCGGACTTATGGATAGAGGTAGCCCGACGACGGGGCCGACCACCCAT
TTTGACTTACTCGTCTTTCAATTTGTTCAACTGGCGGAGAATGGACAAGA
CGGGGCCTGTCGCCTTGGGAAATATTGCGTGTTTGAATAATTTCTTAGGG
GGGATGGACGAGGAGTGGTTCCGCTGTGTGCATATTCATATAGAAGCTGA
GAGTGTTGGGTCGCTTCGAGCGATGCTTCGGTATGTGGAGGAGAGCGAGA
AGCTCAACAGCAGCAACAGTACCAACAATAGTGGCAATCGCAGTGGCATC
TGGAGTAGTAGCGGCAAAACGCCTCTTCTTCTTTCACTACTAGAAGAAGC
TTTGTCAGAAATCACTATTTGCCTCGCCACCATCCGCGCAGTGCTTGCTC
GTATGGGAGAAGGCTGTGACCCTCACATCTACTACTCTCGGGTCAGGCAA
TATATGAGTGGTTGGCGGAATAATCCTGCCTTACCGCATGGGCTGCTGTA
CGGCAAAGAGAAGGAAGGAAAAACGGAAGGGGGAACAAAAGAAGATGTAA
AAGGGCAAAAGGAAAAAGCTGCTGCAGGATTGAGGGAACGGCGCCAATAT
TATGGAGAGACTGGGGCCCAATCCTGCATCCTCCCCGCTGTCGACGCCTT
CCTCGGGATCATCCACGAAATGGACTCTATGCGTGAGTACCTCTTGGAGA
TGCGTGATTACGTCCCTAGAGCCCACCTTGCCTTTCTCCTCCGCCTGGAA
TCCCTCCATCCATCCGTCCGGGAGATTGTAGCACAACAGGAAGACGGGAG
GCAAGTAGGAAGAGGAGGAGAAAGAGGAGGAAAGGGAGGGACAGGAGAGA
GAGAGATAAGTGGCGCGGTCGTGGAGATTTCCTCCGACCATGAGCGGACT
TTGCCTACAGCATATGACCAGGCTGTCAAGGCCTTGGCCCGTTTTCGTGC
ACTCCATTTACATGCCGCGGACACGTACATCAACAAGCCGGCAGAGTCTC
TGGGCACGGGTGGGTCTGATTTCAGGGTGTACTTACGAAAACATCACAGG
GACACCAAGGCGCAATTATTGCAATCACGTGAAAGGGGTAGTGATGGCGT
TGGCACGGAGGAGGAGGATAGAGAGGTCGGTGAACCCGGTGTGAAAGTGT
AATGTAAATGAATAAGGAATTAAGTCGATCTAAGACTTGATGTCTTTAGA
AGGCCCTTTGATGGCCCGTCTTCA
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Coding sequence (CDS) from alignment at chr23:357899..359522+

>NO23G00950.1 ID=NO23G00950.1|Name=NO23G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=1545bp|location=Sequence derived from alignment at chr23:357899..359522+ (Nannochloropsis oceanica)
ATGCCTGGCATACAACACCACGAAAACGATGACGACAGTGACATCTTTGC
CGTGACGGCCGCCCGTGGTTTCTTACCGGTCCGCGACCCTTTGCGGCGCC
TTCCTACGCAGACTACTCTGTCCACCTCCCCACCTCTCTTATTTGACGTA
CTTGAAGCACTTGGAGACGACTTGCCCAAGCTCCTACTCTGTGGGAACGC
AACGCTACGACAGGAAATTGAGACCCGATTGAATGCGGTGGTTGCCAAAA
CGCTACCATCGTCTCTTTCTTCTGAGGTCGAAGAGCGTTTGCTCCTCCTT
CTCTCCTTCATTTCCCACGCCTATGTTTGGGGGCGGTCTCCCTCTTCAAC
TACTACCAGCACTGTGCACGATTGCGACTCCATCCCCACCCCGCTTGCGG
ACTTATGGATAGAGGTAGCCCGACGACGGGGCCGACCACCCATTTTGACT
TACTCGTCTTTCAATTTGTTCAACTGGCGGAGAATGGACAAGACGGGGCC
TGTCGCCTTGGGAAATATTGCGTGTTTGAATAATTTCTTAGGGGGGATGG
ACGAGGAGTGGTTCCGCTGTGTGCATATTCATATAGAAGCTGAGAGTGTT
GGGTCGCTTCGAGCGATGCTTCGGTATGTGGAGGAGAGCGAGAAGCTCAA
CAGCAGCAACAGTACCAACAATAGTGGCAATCGCAGTGGCATCTGGAGTA
GTAGCGGCAAAACGCCTCTTCTTCTTTCACTACTAGAAGAAGCTTTGTCA
GAAATCACTATTTGCCTCGCCACCATCCGCGCAGTGCTTGCTCGTATGGG
AGAAGGCTGTGACCCTCACATCTACTACTCTCGGGTCAGGCAATATATGA
GTGGTTGGCGGAATAATCCTGCCTTACCGCATGGGCTGCTGTACGGCAAA
GAGAAGGAAGGAAAAACGGAAGGGGGAACAAAAGAAGATGTAAAAGGGCA
AAAGGAAAAAGCTGCTGCAGGATTGAGGGAACGGCGCCAATATTATGGAG
AGACTGGGGCCCAATCCTGCATCCTCCCCGCTGTCGACGCCTTCCTCGGG
ATCATCCACGAAATGGACTCTATGCGTGAGTACCTCTTGGAGATGCGTGA
TTACGTCCCTAGAGCCCACCTTGCCTTTCTCCTCCGCCTGGAATCCCTCC
ATCCATCCGTCCGGGAGATTGTAGCACAACAGGAAGACGGGAGGCAAGTA
GGAAGAGGAGGAGAAAGAGGAGGAAAGGGAGGGACAGGAGAGAGAGAGAT
AAGTGGCGCGGTCGTGGAGATTTCCTCCGACCATGAGCGGACTTTGCCTA
CAGCATATGACCAGGCTGTCAAGGCCTTGGCCCGTTTTCGTGCACTCCAT
TTACATGCCGCGGACACGTACATCAACAAGCCGGCAGAGTCTCTGGGCAC
GGGTGGGTCTGATTTCAGGGTGTACTTACGAAAACATCACAGGGACACCA
AGGCGCAATTATTGCAATCACGTGAAAGGGGTAGTGATGGCGTTGGCACG
GAGGAGGAGGATAGAGAGGTCGGTGAACCCGGTGTGAAAGTGTAA
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Synonyms
Publications