NO23G00820.1, NO23G00820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00820.1
Unique NameNO23G00820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1539
Alignment locationchr23:306616..308540 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:306616..308540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00820.1 vs.
Match: EWM27512.1 (lipase class 3 [Nannochloropsis gaditana])

HSP 1 Score: 237.3 bits (604), Expect = 1.100e-58
Identity = 143/408 (35.05%), Postives = 211/408 (51.72%), Query Frame = 0 
Query:   91 DEALLTFAGDTLLQ---ARDHQEAHPEERRPYYAACPYYDKLMS-AFWGCQVLLGARKILTRSCGNFSNIFSLKNPANPTGLWPKKLTDLGPDPPFEVPKALVVHERGTFYWLYRHVNNMYKYAY-LEEEDGSVPWPPVPPGWSEQR---VHYVHETNVRIVFEGFIDTPLAMTMMNEERNVMLVAIRGTLSPQEWNFDFQYQFAEGQARQDFPGGRVHQGVYGVYTLFAKEVLTEVARLQPAHVFVTGHSLGGALAHLLSYTIADRFPGMT-VDSVTFASIMMADESMMAAMAEKINMRNIFYLGPGQ--DGLMYRVGDLIPQATCGPFHGCPLLGTGSRSERYQYAMLGSYVPFYSEDMPNTSAWKIEENTVPFVP-YRFYVSTHLCSYVCWLSHGI-DSETRCYF 486
            DEAL    G  LL+     +  +  P    P++  CP +D L   A +GC  +   + +LT    +FS   S   P NP GL P+ L D  PDPP +V +  +  ER T+Y+ YR +  MY  A+  E  D     P +   W  +R   V Y+ +TN+         +P+A++MM  +R  M+V IRGT+  +EW  DFQY++A+ +    FPG R H+G+Y V+  F K +  EV   QPAHV VTGHSLG  +A+++   + +       VD + F      D          +N R++ +LG G   +  MY  GD+  Q TC P+ GC +L TG   + Y+Y    + VPFY EDMPN   W    N    +P  +  +++H+CSY+CW S  + D ++RCYF
Sbjct:   52 DEALAGDWGYRLLEPYMVYNESDTTPNNYDPWFPGCPVFDNLNKVASFGCNFIRLNKDVLTAFWVDFSKTASTTRPMNPDGLLPQILRDHRPDPPRQVGRETIHAERPTYYYCYRLILLMYSIAFEYERSDMQSILPKLVEDWDRERWYMVDYLKQTNINWKNIPHRQSPIAVSMMKGDR--MMVVIRGTIWTEEWCKDFQYRWADDEDGL-FPG-RTHEGMYSVFVDFYKGLEEEVESRQPAHVLVTGHSLGAGIANMIGLRLENSLQHKPRVDVIGFGGPNTGDTDFADIYRRTVNSRHLIFLGHGSSPNPNMYTAGDITAQYTCEPYPGCDVLATGPFGKTYKYVRPHNQVPFYPEDMPNPKTWNDIANVRRIIPSTKRVIASHICSYICWTSLAVGDLDSRCYF 455
The following BLAST results are available for this feature:
BLAST of NO23G00820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27512.11.100e-5835.05lipase class 3 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00820NO23G00820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00820.1NO23G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00820.1.cds1NO23G00820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00820.1.cds2NO23G00820.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00820.1.cds3NO23G00820.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00820.1 ID=NO23G00820.1|Name=NO23G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1539bp
ATGTTACCCCTCCTCAAGCTAGTCTCCATCTTGATTGTTGCAAGCCTAGG
GCACGCGTTCGGAGCATTGACTGCCACTGCTGACATTTTGTCGAGTGGGT
ATGTAATTTCCGAAGGCGAGGATGCAATTTTGACCGCGGACATTTCTCAA
CACAAGCGCTTCGGCGACAGCGACGATAACGACGGCAGCGACACCATCGT
CGGCCTATTGGAGGGCGACGAGGACCAGAAACATGAGGAAATTAACGAGA
CCGGCACTTCAAGCATGGATGATGAGGCTCTTCTCACTTTTGCGGGCGAC
ACTCTCCTCCAGGCGAGGGACCACCAAGAGGCCCACCCCGAAGAGCGACG
ACCCTACTATGCGGCCTGCCCGTACTATGATAAGCTTATGAGCGCGTTTT
GGGGGTGCCAAGTTCTACTGGGCGCTCGGAAGATACTGACAAGGTCCTGT
GGTAATTTTTCGAACATCTTCTCCCTCAAGAATCCTGCCAACCCCACCGG
TCTTTGGCCAAAGAAACTGACTGACCTCGGGCCCGACCCACCGTTTGAAG
TACCCAAGGCCCTCGTTGTCCATGAGCGAGGGACTTTTTACTGGCTCTAC
CGGCACGTCAATAATATGTATAAGTATGCTTACCTGGAAGAAGAAGATGG
CAGTGTACCGTGGCCGCCTGTGCCTCCTGGATGGAGCGAGCAACGAGTGC
ATTATGTCCACGAGACTAACGTTCGAATTGTCTTTGAGGGTTTTATTGAC
ACGCCCCTGGCCATGACGATGATGAATGAAGAACGAAACGTAATGCTGGT
GGCAATTCGGGGCACGCTGTCGCCTCAGGAGTGGAATTTTGATTTTCAGT
ACCAATTTGCCGAGGGCCAAGCCAGACAAGACTTTCCGGGTGGGCGGGTG
CATCAAGGCGTGTACGGTGTCTACACCCTCTTTGCCAAGGAGGTTCTCAC
AGAGGTCGCGCGTCTCCAGCCCGCGCACGTGTTTGTCACGGGGCACAGCC
TCGGAGGGGCATTGGCCCATTTACTTTCTTACACGATAGCGGATCGGTTT
CCGGGGATGACGGTGGACAGCGTGACATTTGCGAGTATCATGATGGCGGA
TGAGTCCATGATGGCTGCCATGGCGGAAAAGATTAACATGCGAAATATAT
TTTACTTGGGGCCCGGTCAGGACGGCCTTATGTATCGGGTGGGGGATTTG
ATCCCCCAAGCGACTTGTGGGCCTTTTCACGGCTGCCCCTTGCTGGGTAC
AGGCTCTCGATCTGAGAGATATCAATATGCCATGCTGGGGAGCTACGTTC
CATTTTATTCGGAAGACATGCCAAACACCTCAGCGTGGAAAATAGAGGAA
AATACGGTTCCCTTTGTTCCCTACCGCTTTTATGTCTCAACCCATTTGTG
CAGCTACGTATGCTGGCTGTCGCATGGCATTGATTCAGAGACTAGGTGCT
ATTTTCCCAGGCAAAGTGTGCCCAACGAGGGCAAGTACCGCGAAGACGAA
GTGTGTTGGGTCCGGAGTACTTTGACACAGTCAGCCTAG
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protein sequence of NO23G00820.1

>NO23G00820.1-protein ID=NO23G00820.1-protein|Name=NO23G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MLPLLKLVSILIVASLGHAFGALTATADILSSGYVISEGEDAILTADISQ
HKRFGDSDDNDGSDTIVGLLEGDEDQKHEEINETGTSSMDDEALLTFAGD
TLLQARDHQEAHPEERRPYYAACPYYDKLMSAFWGCQVLLGARKILTRSC
GNFSNIFSLKNPANPTGLWPKKLTDLGPDPPFEVPKALVVHERGTFYWLY
RHVNNMYKYAYLEEEDGSVPWPPVPPGWSEQRVHYVHETNVRIVFEGFID
TPLAMTMMNEERNVMLVAIRGTLSPQEWNFDFQYQFAEGQARQDFPGGRV
HQGVYGVYTLFAKEVLTEVARLQPAHVFVTGHSLGGALAHLLSYTIADRF
PGMTVDSVTFASIMMADESMMAAMAEKINMRNIFYLGPGQDGLMYRVGDL
IPQATCGPFHGCPLLGTGSRSERYQYAMLGSYVPFYSEDMPNTSAWKIEE
NTVPFVPYRFYVSTHLCSYVCWLSHGIDSETRCYFPRQSVPNEGKYREDE
VCWVRSTLTQSA*
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mRNA from alignment at chr23:306616..308540+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00820.1 ID=NO23G00820.1|Name=NO23G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp|location=Sequence derived from alignment at chr23:306616..308540+ (Nannochloropsis oceanica)
ATGTTACCCCTCCTCAAGCTAGTCTCCATCTTGATTGTTGCAAGCCTAGG
GCACGCGTTCGGAGCATTGACTGCCACTGCTGACATTTTGTCGAGTGGGT
ATGTAATTTCCGAAGGCGAGGATGCAATTTTGACCGCGGACATTTCTCAA
CACAAGCGCTTCGGCGACAGCGACGATAACGACGGCAGCGACACCATCGT
CGGCCTATTGGAGGGCGACGAGGACCAGAAACATGAGGAAATTAACGAGA
CCGGCACTTCAAGCATGGATGATGAGGCTCTTCTCACTTTTGCGGGCGAC
ACTCTCCTCCAGGCGAGGGACCACCAAGAGGCCCACCCCGAAGAGCGACG
ACCCTACTATGCGGCCTGCCCGTACTATGATAAGCTTATGAGCGCGTTTT
GGGGGTGCCAAGTTCTACTGGGCGCTCGGAAGATACTGACAAGGTCCTGT
GGTAATTTTTCGAACATCTTCTCCCTCAAGAATCCTGCCAACCCCACCGG
TCTTTGGCCAAAGAAACTGACTGACCTCGGGCCCGACCCACCGTTTGAAG
TACCCAAGGCCCTCGTTGTCCATGAGCGAGGGACTTTTTACTGGCTCTAC
CGGCACGTCAATAATATGTATAAGTATGCTTACCTGGAAGAAGAAGATGG
CAGTGTACCGTGGCCGCCTGTGCCTCCTGGATGGAGCGAGCAACGAGTGC
ATTATGTCCACGAGACTAACGTTCGAATTGTCTTTGAGGGTTTTATTGAC
ACGCCCCTGGCCATGACGATGATGAATGAAGAACGAAACGTAATGCTGGT
GGCAATTCGGGGCACGCTGTCGCCTCAGGAGTGGAATTTTGATTTTCAGG
TACACTTGGTTTGGGTGAGGAAATGAGAGAGAGAGAGAATAACCATTCCC
ACTCACCCCATCCATTCCTCCATTCATCTTCCTTGGATTCCCACATACGT
TCACAGTACCAATTTGCCGAGGGCCAAGCCAGACAAGACTTTCCGGGTGG
GCGGGTGCATCAAGGCGTGTACGGTGTCTACACCCTCTTTGCCAAGGAGG
TTCTCACAGAGGTCGCGCGTCTCCAGCCCGCGCACGTGTTTGTCACGGGG
CACAGCCTCGGAGGGGCATTGGCCCATTTACTTTCTTACACGATAGCGGA
TCGGTTTCCGGGGATGACGGTGGACAGCGTGACATTTGCGAGTATCATGA
TGGCGGATGAGTCCATGATGGCTGCCATGGCGGAAAAGATTAACATGCGA
AATATATTTTACTTGGGGCCCGGTCAGGACGGCCTTATGTATCGGGTGGG
GGATTTGATCCCCCAAGCGACTTGGTACGTGCTTGGAGTTCTAAAAGGGG
TTTTTGGTGAATGTTTCCGAAGGGAGAAAGAGAAGAAGGTAGAGCTAAAG
GTGATGATCGCTTGCAAGAAATAGCGGGGATTTTTGGTTGGCTCGGCGAC
AACGAGGGAACCTCTCTCGCATATCAGCTCAATCTCTTGCTCGCAGTCCG
TACTTTAAGGCCACAAAGATGATCTGTTATTTCACGAATTCCTCCTACTA
GAATTTTTATTTTCATCGACATCGACCCCCCATCACACACAAAAAAAAAA
CAGTGGGCCTTTTCACGGCTGCCCCTTGCTGGGTACAGGCTCTCGATCTG
AGAGATATCAATATGCCATGCTGGGGAGCTACGTTCCATTTTATTCGGAA
GACATGCCAAACACCTCAGCGTGGAAAATAGAGGAAAATACGGTTCCCTT
TGTTCCCTACCGCTTTTATGTCTCAACCCATTTGTGCAGCTACGTATGCT
GGCTGTCGCATGGCATTGATTCAGAGACTAGGTGCTATTTTCCCAGGCAA
AGTGTGCCCAACGAGGGCAAGTACCGCGAAGACGAAGTGTGTTGGGTCCG
GAGTACTTTGACACAGTCAGCCTAG
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Coding sequence (CDS) from alignment at chr23:306616..308540+

>NO23G00820.1 ID=NO23G00820.1|Name=NO23G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr23:306616..308540+ (Nannochloropsis oceanica)
ATGTTACCCCTCCTCAAGCTAGTCTCCATCTTGATTGTTGCAAGCCTAGG
GCACGCGTTCGGAGCATTGACTGCCACTGCTGACATTTTGTCGAGTGGGT
ATGTAATTTCCGAAGGCGAGGATGCAATTTTGACCGCGGACATTTCTCAA
CACAAGCGCTTCGGCGACAGCGACGATAACGACGGCAGCGACACCATCGT
CGGCCTATTGGAGGGCGACGAGGACCAGAAACATGAGGAAATTAACGAGA
CCGGCACTTCAAGCATGGATGATGAGGCTCTTCTCACTTTTGCGGGCGAC
ACTCTCCTCCAGGCGAGGGACCACCAAGAGGCCCACCCCGAAGAGCGACG
ACCCTACTATGCGGCCTGCCCGTACTATGATAAGCTTATGAGCGCGTTTT
GGGGGTGCCAAGTTCTACTGGGCGCTCGGAAGATACTGACAAGGTCCTGT
GGTAATTTTTCGAACATCTTCTCCCTCAAGAATCCTGCCAACCCCACCGG
TCTTTGGCCAAAGAAACTGACTGACCTCGGGCCCGACCCACCGTTTGAAG
TACCCAAGGCCCTCGTTGTCCATGAGCGAGGGACTTTTTACTGGCTCTAC
CGGCACGTCAATAATATGTATAAGTATGCTTACCTGGAAGAAGAAGATGG
CAGTGTACCGTGGCCGCCTGTGCCTCCTGGATGGAGCGAGCAACGAGTGC
ATTATGTCCACGAGACTAACGTTCGAATTGTCTTTGAGGGTTTTATTGAC
ACGCCCCTGGCCATGACGATGATGAATGAAGAACGAAACGTAATGCTGGT
GGCAATTCGGGGCACGCTGTCGCCTCAGGAGTGGAATTTTGATTTTCAGT
ACCAATTTGCCGAGGGCCAAGCCAGACAAGACTTTCCGGGTGGGCGGGTG
CATCAAGGCGTGTACGGTGTCTACACCCTCTTTGCCAAGGAGGTTCTCAC
AGAGGTCGCGCGTCTCCAGCCCGCGCACGTGTTTGTCACGGGGCACAGCC
TCGGAGGGGCATTGGCCCATTTACTTTCTTACACGATAGCGGATCGGTTT
CCGGGGATGACGGTGGACAGCGTGACATTTGCGAGTATCATGATGGCGGA
TGAGTCCATGATGGCTGCCATGGCGGAAAAGATTAACATGCGAAATATAT
TTTACTTGGGGCCCGGTCAGGACGGCCTTATGTATCGGGTGGGGGATTTG
ATCCCCCAAGCGACTTGTGGGCCTTTTCACGGCTGCCCCTTGCTGGGTAC
AGGCTCTCGATCTGAGAGATATCAATATGCCATGCTGGGGAGCTACGTTC
CATTTTATTCGGAAGACATGCCAAACACCTCAGCGTGGAAAATAGAGGAA
AATACGGTTCCCTTTGTTCCCTACCGCTTTTATGTCTCAACCCATTTGTG
CAGCTACGTATGCTGGCTGTCGCATGGCATTGATTCAGAGACTAGGTGCT
ATTTTCCCAGGCAAAGTGTGCCCAACGAGGGCAAGTACCGCGAAGACGAA
GTGTGTTGGGTCCGGAGTACTTTGACACAGTCAGCCTAG
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Synonyms
Publications