NO23G00810.1, NO23G00810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00810.1
Unique NameNO23G00810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr23:305227..305934 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:305227..305934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00810.1 vs.
Match: CBJ49021.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 84.3 bits (207), Expect = 5.400e-13
Identity = 68/163 (41.72%), Postives = 97/163 (59.51%), Query Frame = 0 
Query:   23 ENLKAAREGKKSRLDSLVIEEEDNVYDVMDEDEYEDLVRKRRQREDFVVDDEGLGYYDDGEEHAYEKEEEQQQRNLAEKAARKKTGVSTISAEAL-RKARRLGQLSEGVSKGGAGAKEGLFKYVQRAGAS-VGP-------ATAGGGGGGGGAGKSKSTILQD 177
            E+L+AAR+G +SR +    +++D VYD + E+EY++LVRKR+Q +DFVVDD+GLGY DDGEE   + +  +      +K   +K     I A++L RKAR+L QL +  S+ G G K    K+++  G S VGP       + A GG  GGGAG      L D
Sbjct:   26 ESLRAARDGLESRTEQHE-DDDDEVYDEVTEEEYQELVRKRQQADDFVVDDDGLGYADDGEEFIEKADGSEGAAGRGDKGGGRKGVNGKIKADSLRRKARKLNQLGDEASQAGGGIK----KFLRTGGGSTVGPSALSRNSSAAPGGRRGGGAGAGGGLNLDD 183
The following BLAST results are available for this feature:
BLAST of NO23G00810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ49021.15.400e-1341.72conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00810NO23G00810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00810.1NO23G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00810.1.cds1NO23G00810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00810.1 ID=NO23G00810.1|Name=NO23G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
ATGGCGGAGCGTCCTCGCCGCGAGAAGGTTGTTACGGCCGCAGACTTGAA
GCGCAAGTCGGACCGGGAGAACCTCAAGGCGGCACGGGAGGGGAAGAAGA
GTCGCTTGGACAGCTTGGTGATCGAGGAGGAGGACAATGTCTACGACGTG
ATGGACGAGGACGAGTATGAAGATTTGGTGCGCAAGCGTCGACAACGGGA
GGATTTTGTGGTGGACGATGAAGGCCTGGGCTATTACGACGACGGGGAGG
AGCATGCCTACGAAAAGGAGGAGGAGCAACAGCAACGCAACCTAGCCGAG
AAGGCGGCGCGGAAAAAGACGGGCGTCTCCACCATTTCGGCCGAGGCCCT
GCGCAAAGCCCGACGATTGGGCCAGCTCAGCGAAGGTGTCAGCAAGGGTG
GTGCCGGTGCTAAGGAGGGTCTGTTCAAGTACGTCCAGCGGGCAGGCGCC
TCGGTGGGGCCCGCGACTGCTGGCGGCGGGGGTGGGGGAGGAGGAGCAGG
CAAGAGTAAAAGCACGATCCTTCAGGACGATAGCTCGGCTTCGGCGATCG
GGAGAGGAAGCAAGGCTGCAGCCAAGAGGAAGGGTGAGCCTGGGGGAACG
TTCGAGGCGGAGTTGGAGTCGCAATTGAATGACTTGATTAGCGATGGTGG
GGGGGGGAAGGAAGGGAAGGGGGAAGTACTTATTCCTCCGCCTCTCGACG
ACCGATAG
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protein sequence of NO23G00810.1

>NO23G00810.1-protein ID=NO23G00810.1-protein|Name=NO23G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MAERPRREKVVTAADLKRKSDRENLKAAREGKKSRLDSLVIEEEDNVYDV
MDEDEYEDLVRKRRQREDFVVDDEGLGYYDDGEEHAYEKEEEQQQRNLAE
KAARKKTGVSTISAEALRKARRLGQLSEGVSKGGAGAKEGLFKYVQRAGA
SVGPATAGGGGGGGGAGKSKSTILQDDSSASAIGRGSKAAAKRKGEPGGT
FEAELESQLNDLISDGGGGKEGKGEVLIPPPLDDR*
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mRNA from alignment at chr23:305227..305934-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00810.1 ID=NO23G00810.1|Name=NO23G00810.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp|location=Sequence derived from alignment at chr23:305227..305934- (Nannochloropsis oceanica)
ATGGCGGAGCGTCCTCGCCGCGAGAAGGTTGTTACGGCCGCAGACTTGAA
GCGCAAGTCGGACCGGGAGAACCTCAAGGCGGCACGGGAGGGGAAGAAGA
GTCGCTTGGACAGCTTGGTGATCGAGGAGGAGGACAATGTCTACGACGTG
ATGGACGAGGACGAGTATGAAGATTTGGTGCGCAAGCGTCGACAACGGGA
GGATTTTGTGGTGGACGATGAAGGCCTGGGCTATTACGACGACGGGGAGG
AGCATGCCTACGAAAAGGAGGAGGAGCAACAGCAACGCAACCTAGCCGAG
AAGGCGGCGCGGAAAAAGACGGGCGTCTCCACCATTTCGGCCGAGGCCCT
GCGCAAAGCCCGACGATTGGGCCAGCTCAGCGAAGGTGTCAGCAAGGGTG
GTGCCGGTGCTAAGGAGGGTCTGTTCAAGTACGTCCAGCGGGCAGGCGCC
TCGGTGGGGCCCGCGACTGCTGGCGGCGGGGGTGGGGGAGGAGGAGCAGG
CAAGAGTAAAAGCACGATCCTTCAGGACGATAGCTCGGCTTCGGCGATCG
GGAGAGGAAGCAAGGCTGCAGCCAAGAGGAAGGGTGAGCCTGGGGGAACG
TTCGAGGCGGAGTTGGAGTCGCAATTGAATGACTTGATTAGCGATGGTGG
GGGGGGGAAGGAAGGGAAGGGGGAAGTACTTATTCCTCCGCCTCTCGACG
ACCGATAG
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Coding sequence (CDS) from alignment at chr23:305227..305934-

>NO23G00810.1 ID=NO23G00810.1|Name=NO23G00810.1|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at chr23:305227..305934- (Nannochloropsis oceanica)
ATGGCGGAGCGTCCTCGCCGCGAGAAGGTTGTTACGGCCGCAGACTTGAA
GCGCAAGTCGGACCGGGAGAACCTCAAGGCGGCACGGGAGGGGAAGAAGA
GTCGCTTGGACAGCTTGGTGATCGAGGAGGAGGACAATGTCTACGACGTG
ATGGACGAGGACGAGTATGAAGATTTGGTGCGCAAGCGTCGACAACGGGA
GGATTTTGTGGTGGACGATGAAGGCCTGGGCTATTACGACGACGGGGAGG
AGCATGCCTACGAAAAGGAGGAGGAGCAACAGCAACGCAACCTAGCCGAG
AAGGCGGCGCGGAAAAAGACGGGCGTCTCCACCATTTCGGCCGAGGCCCT
GCGCAAAGCCCGACGATTGGGCCAGCTCAGCGAAGGTGTCAGCAAGGGTG
GTGCCGGTGCTAAGGAGGGTCTGTTCAAGTACGTCCAGCGGGCAGGCGCC
TCGGTGGGGCCCGCGACTGCTGGCGGCGGGGGTGGGGGAGGAGGAGCAGG
CAAGAGTAAAAGCACGATCCTTCAGGACGATAGCTCGGCTTCGGCGATCG
GGAGAGGAAGCAAGGCTGCAGCCAAGAGGAAGGGTGAGCCTGGGGGAACG
TTCGAGGCGGAGTTGGAGTCGCAATTGAATGACTTGATTAGCGATGGTGG
GGGGGGGAAGGAAGGGAAGGGGGAAGTACTTATTCCTCCGCCTCTCGACG
ACCGATAG
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Synonyms
Publications