NO23G00780.1, NO23G00780.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00780.1
Unique NameNO23G00780.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1422
Alignment locationchr23:296199..297874 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:296199..297874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO23G00780.1 vs.
Match: EWM22955.1 (hypothetical protein Naga_100102g19 [Nannochloropsis gaditana])

HSP 1 Score: 802.0 bits (2070), Expect = 1.000e-228
Identity = 405/485 (83.51%), Postives = 432/485 (89.07%), Query Frame = 0 
Query:    1 MQAPADDAWGHWFPFVQHNPVLGDKKSWRDRAELLRRLERDGIIVAKGILDARECADLAEDMGGWLKRQGIDCNDNKTWGKYDAKNLHMSKTILGMMNTGPACFSSVALKARSSPKVVEIFKVLYDMPSEDDLVMQLQGLFWGFPPEHYPGGFIPPQEGAPPNHGGYYHWSQMWMHSDRGRSTTWPPRLQCTLVLEDVSLYDHGFVFLSKSHYYHDEFFAAHPPGTLELEPGPTKPPATPGAPGTMTAQAQQQQ-------AEEEGKDNYIQLTYDNVKYFEQRGCQWKKVVAPKGSIIIWDSRLIHSTCAPSRGRPYPRARFIVFGGYVPRAFVTDEEKAERTRNFQRFCQGIDHQILLELWQRGPPGRLRRLMGLDDCGGNEGSVGALTSGGSGMSGASGEEGNEEGAEEEKDRERDG-SGQTEEKGLVGGR---AEEGEGKEE-QKMDMIKLKGLEGAWSWKEKEAANALLVMMRPSYKQKR 474
            MQAP DD WGHWFPFVQHNPVLGDKKSWRDRAELLRRLERDGIIVAKGILDARECA+LAEDMGGWLKRQGIDCNDNKTW KY+A NLHMSK+ILGMMNTGPACFSSVALKARSSPKVVEIFKVL+D+PSEDDLVMQLQGLFWGFPPEHYPGGFIPP EGAP N GGYYHWS+MWMHSDRGRSTT+P  LQCTLVLEDVSLYDHGFVFLSKSHYYHDEFFA+HPPGTLELEP    PP TP A G+   + QQQQ        +EEGKD YIQLTY+NVKYFEQ+GCQWKKVVAPKGSIIIWDSRLIHSTCAPSRGRP+PRARFIVFGGYVPRA +T+EEKAER RNFQR+CQGIDHQILLELWQRGPPGRLRRLMGL++ GG EGSVG LTS GSGMSG S EEG EEG   E++R+++G  G TEE+ L+GGR    EEGE KEE QKM MIKLKGLEGAWSWKEKEAANALLVMMRP+ KQKR
Sbjct:    1 MQAPPDD-WGHWFPFVQHNPVLGDKKSWRDRAELLRRLERDGIIVAKGILDARECAELAEDMGGWLKRQGIDCNDNKTWDKYNAANLHMSKSILGMMNTGPACFSSVALKARSSPKVVEIFKVLHDVPSEDDLVMQLQGLFWGFPPEHYPGGFIPPLEGAPSNQGGYYHWSEMWMHSDRGRSTTYPAPLQCTLVLEDVSLYDHGFVFLSKSHYYHDEFFASHPPGTLELEPRSLLPPTTPVAAGSAAMRQQQQQQQQQQQLLQEEGKDTYIQLTYENVKYFEQKGCQWKKVVAPKGSIIIWDSRLIHSTCAPSRGRPFPRARFIVFGGYVPRADLTEEEKAERARNFQRYCQGIDHQILLELWQRGPPGRLRRLMGLEEPGG-EGSVGGLTSVGSGMSGGSAEEGEEEG---EQERKKEGCGGVTEERKLIGGRIHHQEEGERKEEQQKMAMIKLKGLEGAWSWKEKEAANALLVMMRPN-KQKR 479
The following BLAST results are available for this feature:
BLAST of NO23G00780.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22955.11.000e-22883.51hypothetical protein Naga_100102g19 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00780NO23G00780Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00780.1NO23G00780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00780.1.cds1NO23G00780.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00780.1.cds2NO23G00780.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00780.1.cds3NO23G00780.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00780.1 ID=NO23G00780.1|Name=NO23G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
ATGCAAGCCCCTGCGGACGATGCATGGGGCCACTGGTTCCCTTTTGTCCA
ACACAATCCGGTGCTGGGGGATAAAAAGTCCTGGCGAGACCGGGCAGAGC
TGCTTCGACGCTTGGAACGGGATGGGATCATCGTGGCCAAAGGTATCCTG
GATGCGCGAGAGTGCGCTGATCTGGCCGAGGACATGGGCGGCTGGTTGAA
GCGGCAAGGGATCGACTGCAACGACAACAAAACCTGGGGCAAGTACGACG
CCAAGAATTTGCACATGAGCAAAACCATCCTGGGCATGATGAACACGGGA
CCAGCTTGCTTCTCCAGTGTGGCCCTCAAGGCACGAAGCTCGCCCAAAGT
GGTGGAGATCTTCAAGGTGCTGTATGACATGCCTTCGGAGGACGACCTGG
TCATGCAGCTACAGGGCCTGTTCTGGGGCTTTCCCCCCGAGCACTACCCA
GGCGGCTTCATACCCCCGCAAGAGGGGGCGCCGCCTAATCACGGTGGCTA
CTATCACTGGTCGCAAATGTGGATGCACAGCGACCGGGGACGGTCAACCA
CCTGGCCGCCGCGGCTGCAGTGCACGCTGGTGCTTGAAGACGTGTCACTC
TACGATCACGGCTTCGTCTTCCTTTCCAAGTCCCACTATTATCATGACGA
GTTCTTTGCCGCCCACCCGCCCGGTACACTCGAACTCGAGCCTGGTCCCA
CCAAGCCTCCCGCCACGCCTGGCGCACCTGGAACCATGACGGCGCAGGCG
CAGCAACAGCAGGCGGAGGAGGAGGGCAAGGACAACTATATCCAGCTCAC
GTACGACAACGTGAAATACTTTGAGCAGCGCGGTTGCCAGTGGAAGAAAG
TGGTGGCGCCCAAGGGCTCCATTATCATCTGGGACTCGCGCCTCATCCAC
TCCACCTGCGCCCCCTCCCGTGGCCGGCCCTACCCCAGGGCCCGCTTCAT
CGTGTTTGGGGGATATGTGCCGCGCGCCTTTGTTACTGACGAGGAGAAGG
CCGAACGCACCCGCAACTTCCAGCGCTTTTGTCAGGGAATCGACCACCAG
ATTCTGCTCGAACTTTGGCAGCGCGGGCCGCCCGGGAGGCTACGGAGGCT
CATGGGGCTGGACGATTGCGGGGGCAATGAGGGGAGCGTTGGTGCGCTGA
CGAGCGGGGGCAGCGGCATGAGCGGCGCGAGTGGAGAGGAGGGAAATGAG
GAGGGGGCCGAGGAGGAGAAGGATAGGGAGCGGGATGGAAGTGGGCAGAC
TGAAGAAAAAGGTCTTGTAGGCGGTAGAGCGGAGGAGGGGGAGGGGAAGG
AGGAGCAGAAGATGGACATGATCAAGTTGAAAGGCCTGGAGGGGGCCTGG
AGCTGGAAGGAGAAGGAGGCAGCTAATGCTCTTCTGGTGATGATGAGACC
ATCCTACAAACAAAAAAGATAA
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protein sequence of NO23G00780.1

>NO23G00780.1-protein ID=NO23G00780.1-protein|Name=NO23G00780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MQAPADDAWGHWFPFVQHNPVLGDKKSWRDRAELLRRLERDGIIVAKGIL
DARECADLAEDMGGWLKRQGIDCNDNKTWGKYDAKNLHMSKTILGMMNTG
PACFSSVALKARSSPKVVEIFKVLYDMPSEDDLVMQLQGLFWGFPPEHYP
GGFIPPQEGAPPNHGGYYHWSQMWMHSDRGRSTTWPPRLQCTLVLEDVSL
YDHGFVFLSKSHYYHDEFFAAHPPGTLELEPGPTKPPATPGAPGTMTAQA
QQQQAEEEGKDNYIQLTYDNVKYFEQRGCQWKKVVAPKGSIIIWDSRLIH
STCAPSRGRPYPRARFIVFGGYVPRAFVTDEEKAERTRNFQRFCQGIDHQ
ILLELWQRGPPGRLRRLMGLDDCGGNEGSVGALTSGGSGMSGASGEEGNE
EGAEEEKDRERDGSGQTEEKGLVGGRAEEGEGKEEQKMDMIKLKGLEGAW
SWKEKEAANALLVMMRPSYKQKR*
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mRNA from alignment at chr23:296199..297874+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00780.1 ID=NO23G00780.1|Name=NO23G00780.1|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at chr23:296199..297874+ (Nannochloropsis oceanica)
ATGCAAGCCCCTGCGGACGATGCATGGGGCCACTGGTTCCCTTTTGTCCA
ACACAATCCGGTGCTGGGGGATAAAAAGTCCTGGCGAGACCGGGCAGAGC
TGCTTCGACGCTTGGAACGGGATGGGATCATCGTGGCCAAAGGTAAGAAA
ACACTCCATACGGGGAAAAGGCGCCGCAAAGGACAGGGGCTGAAACCGTG
AGGAAGAAGGGACATAAGTTATGAATAATGCTCGTTATATCATCCTGTAG
GTATCCTGGATGCGCGAGAGTGCGCTGATCTGGCCGAGGACATGGGCGGC
TGGTTGAAGCGGCAAGGGATCGACTGCAACGACAACAAAACCTGGGGCAA
GTACGACGCCAAGAATTTGCACATGAGCAAAACCATCCTGGGCATGATGA
ACACGGGACCAGCTTGCTTCTCCAGGTACACTTTGTAACTTTAGCACTCC
CCCACCATTTCCGTAATTTCCGTAGGACTCTTACACGCGTCGCCCGAGGG
GAGAACGGACAACTTGTCCGGTTCTGCACCTTCCTGACTCACAACTTCTT
TCGTCCTCCCGAATAAAACAGTGTGGCCCTCAAGGCACGAAGCTCGCCCA
AAGTGGTGGAGATCTTCAAGGTGCTGTATGACATGCCTTCGGAGGACGAC
CTGGTCATGCAGCTACAGGGCCTGTTCTGGGGCTTTCCCCCCGAGCACTA
CCCAGGCGGCTTCATACCCCCGCAAGAGGGGGCGCCGCCTAATCACGGTG
GCTACTATCACTGGTCGCAAATGTGGATGCACAGCGACCGGGGACGGTCA
ACCACCTGGCCGCCGCGGCTGCAGTGCACGCTGGTGCTTGAAGACGTGTC
ACTCTACGATCACGGCTTCGTCTTCCTTTCCAAGTCCCACTATTATCATG
ACGAGTTCTTTGCCGCCCACCCGCCCGGTACACTCGAACTCGAGCCTGGT
CCCACCAAGCCTCCCGCCACGCCTGGCGCACCTGGAACCATGACGGCGCA
GGCGCAGCAACAGCAGGCGGAGGAGGAGGGCAAGGACAACTATATCCAGC
TCACGTACGACAACGTGAAATACTTTGAGCAGCGCGGTTGCCAGTGGAAG
AAAGTGGTGGCGCCCAAGGGCTCCATTATCATCTGGGACTCGCGCCTCAT
CCACTCCACCTGCGCCCCCTCCCGTGGCCGGCCCTACCCCAGGGCCCGCT
TCATCGTGTTTGGGGGATATGTGCCGCGCGCCTTTGTTACTGACGAGGAG
AAGGCCGAACGCACCCGCAACTTCCAGCGCTTTTGTCAGGGAATCGACCA
CCAGATTCTGCTCGAACTTTGGCAGCGCGGGCCGCCCGGGAGGCTACGGA
GGCTCATGGGGCTGGACGATTGCGGGGGCAATGAGGGGAGCGTTGGTGCG
CTGACGAGCGGGGGCAGCGGCATGAGCGGCGCGAGTGGAGAGGAGGGAAA
TGAGGAGGGGGCCGAGGAGGAGAAGGATAGGGAGCGGGATGGAAGTGGGC
AGACTGAAGAAAAAGGTCTTGTAGGCGGTAGAGCGGAGGAGGGGGAGGGG
AAGGAGGAGCAGAAGATGGACATGATCAAGTTGAAAGGCCTGGAGGGGGC
CTGGAGCTGGAAGGAGAAGGAGGCAGCTAATGCTCTTCTGGTGATGATGA
GACCATCCTACAAACAAAAAAGATAA
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Coding sequence (CDS) from alignment at chr23:296199..297874+

>NO23G00780.1 ID=NO23G00780.1|Name=NO23G00780.1|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at chr23:296199..297874+ (Nannochloropsis oceanica)
ATGCAAGCCCCTGCGGACGATGCATGGGGCCACTGGTTCCCTTTTGTCCA
ACACAATCCGGTGCTGGGGGATAAAAAGTCCTGGCGAGACCGGGCAGAGC
TGCTTCGACGCTTGGAACGGGATGGGATCATCGTGGCCAAAGGTATCCTG
GATGCGCGAGAGTGCGCTGATCTGGCCGAGGACATGGGCGGCTGGTTGAA
GCGGCAAGGGATCGACTGCAACGACAACAAAACCTGGGGCAAGTACGACG
CCAAGAATTTGCACATGAGCAAAACCATCCTGGGCATGATGAACACGGGA
CCAGCTTGCTTCTCCAGTGTGGCCCTCAAGGCACGAAGCTCGCCCAAAGT
GGTGGAGATCTTCAAGGTGCTGTATGACATGCCTTCGGAGGACGACCTGG
TCATGCAGCTACAGGGCCTGTTCTGGGGCTTTCCCCCCGAGCACTACCCA
GGCGGCTTCATACCCCCGCAAGAGGGGGCGCCGCCTAATCACGGTGGCTA
CTATCACTGGTCGCAAATGTGGATGCACAGCGACCGGGGACGGTCAACCA
CCTGGCCGCCGCGGCTGCAGTGCACGCTGGTGCTTGAAGACGTGTCACTC
TACGATCACGGCTTCGTCTTCCTTTCCAAGTCCCACTATTATCATGACGA
GTTCTTTGCCGCCCACCCGCCCGGTACACTCGAACTCGAGCCTGGTCCCA
CCAAGCCTCCCGCCACGCCTGGCGCACCTGGAACCATGACGGCGCAGGCG
CAGCAACAGCAGGCGGAGGAGGAGGGCAAGGACAACTATATCCAGCTCAC
GTACGACAACGTGAAATACTTTGAGCAGCGCGGTTGCCAGTGGAAGAAAG
TGGTGGCGCCCAAGGGCTCCATTATCATCTGGGACTCGCGCCTCATCCAC
TCCACCTGCGCCCCCTCCCGTGGCCGGCCCTACCCCAGGGCCCGCTTCAT
CGTGTTTGGGGGATATGTGCCGCGCGCCTTTGTTACTGACGAGGAGAAGG
CCGAACGCACCCGCAACTTCCAGCGCTTTTGTCAGGGAATCGACCACCAG
ATTCTGCTCGAACTTTGGCAGCGCGGGCCGCCCGGGAGGCTACGGAGGCT
CATGGGGCTGGACGATTGCGGGGGCAATGAGGGGAGCGTTGGTGCGCTGA
CGAGCGGGGGCAGCGGCATGAGCGGCGCGAGTGGAGAGGAGGGAAATGAG
GAGGGGGCCGAGGAGGAGAAGGATAGGGAGCGGGATGGAAGTGGGCAGAC
TGAAGAAAAAGGTCTTGTAGGCGGTAGAGCGGAGGAGGGGGAGGGGAAGG
AGGAGCAGAAGATGGACATGATCAAGTTGAAAGGCCTGGAGGGGGCCTGG
AGCTGGAAGGAGAAGGAGGCAGCTAATGCTCTTCTGGTGATGATGAGACC
ATCCTACAAACAAAAAAGATAA
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Synonyms
Publications