|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:235123..239383 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00560.1 vs.
Match: XP_002177931.1 (enoyl-acp reductase [Phaeodactylum tricornutum CCAP 1055/1]; EEC50745.1 enoyl-acp reductase [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 461.5 bits (1186), Expect = 2.400e-126 Identity = 234/303 (77.23%), Postives = 258/303 (85.15%), Query Frame = 0
Query: 46 VDLRGKTAFIAGVADANGYGWAITKHLAEAGCKVIVGTWPPVLGIFKATLDSGKLAEDLKTSTGDKWDIAKIYPLDATFDTPDDVPEAVKTNKRYAGLGGYTISEVAKEVEKDFGKIDILIHSLANGPEVTKPLLETTRNGYLTASSASAYSMVSLVQHFAPIMNEGGSVLSLTYIASEKVIPGYGGGMSSAKAQLESDTRVLAFEAGRKYKIRVNTISAGPLKSRAASAIGGGEKGKKTFIEYAIDYSRANAPLAQDLYADDVGATGLFLSSPMARCVTGVTMYVDNGLHAMGMALDSVAMQ 349
VDL+GK AF+AGVAD+ GYGWAI K LAEAG +IVGTWPPVL IF+ L G+ ED + G I K+YPLDA FD PDDVP+ +K NKRYAGL GYTISEVAK VE D+GKIDIL+HSLANGPEVTKPLLETTR GYL ASSASAYS VSL+Q F PIMNEGG++LSLTYIASEKVIPGYGGGMSSAKAQLESDTR LA+EAGRK+ IRVNTISAGPLKSRAASAI G E G+KTFIEYAIDYS+ANAPL QDLY+DDVG LFL+SPMAR VTGVT+YVDNGLH+MGMALDS AM+
Sbjct: 5 VDLKGKVAFVAGVADSTGYGWAIAKALAEAGATIIVGTWPPVLKIFQMGLKKGQFNEDSTLADGSLMTIEKVYPLDAVFDAPDDVPDEIKENKRYAGLDGYTISEVAKAVEADYGKIDILVHSLANGPEVTKPLLETTRKGYLAASSASAYSAVSLLQKFGPIMNEGGAMLSLTYIASEKVIPGYGGGMSSAKAQLESDTRTLAYEAGRKWGIRVNTISAGPLKSRAASAI-GKEPGQKTFIEYAIDYSKANAPLEQDLYSDDVGNASLFLTSPMARTVTGVTLYVDNGLHSMGMALDSKAME 306
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00560.1 ID=NO23G00560.1|Name=NO23G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=3233bp CCCCCCACCCGCCGCAGCGCCAGCAGCACTCCCACCCCCATCCGAACGAG CGCTGCTGGTTCTGCCTAACGCCTCACCCCCACCGTGACGGGCAGGAGAG GAGGAGGAGGAGGAGGGAGAGGCGCCGATGCTGTAACTCTGGTCGGAGAA GAGGTCGATGGAGCCGGTACGACCGCGTTTCATTTGATGGTGTGTGCTGA AAGGCTACCTTGTCGTCGTAGAGCAAATTTACTCGGGACTTGGTTATCTT CGTGTTTGTTTGCTTGATGTCCTCCTACTGCTGCTGCAGCAGCTGCTCGA GCAGCTCGAGCTGCTAGACCTGTTGCGGAGAGGAATGCGGTATGACTGTG CGGGCGGGAAAGGGGAACGGAGAGGAGGCATGATGAGATTAGGAGCGGGC ATTGTCTTATGTCCCTCTACTATTGTGAGTCTATCAGATGGGGCAACGAT GTGTGCGTGCTTTTGAGGGGTTCTACTCTGCTGCCCTGGTGTGATGCATG ATTCTGTAGTGAGGGTAGTAGGGGAGGCGAAATGGGGTGTGGGGAGGTCA GGAGCTAGGCATGCATTTGTTGGAGAATCTTCCTGGGTATGTCAGCCATG AATTGGGTGGGGAAATCAAGGCCATATTCACACACAAACCACACATTACA GTGCTAACATTTCAGGAAGAAGTAAGCTATATGCTCTCTCTCGAAGGCCA AATGCCTCACTCTTCACTCGCATTTATTTTGTCTCTTCCTATCCGTCCCC TCCTTTTCCTCCTTCCCCCTGGGCAGGTTTGTCTTCTGCTTTTCCCCCTC TTTTTCACATCTTCCCTCTCCTTCTCTCTGTCACTTGCTAACTACCCTGA GTGTCGTATGAGTGATCTCATTTTCACCCAATTTCGAGTTCATTTTTTGG CGGGAGGGAAAATCGGTTGCTCGTCATCGGCTCGCGTCTTTTGTGTGAGC GATGCGGCCTTGGATCTGTTGGGCTTCTTTTGCCGTGGTGGTCACTAGTG ACGACACATTATAAGCCACGCTGCGTGTGGTCGAGCACGCAGCGGCCTTA GCTGGCCGGCGTGATTGCTGTGAGTTAGTTGTCAAGGATTGCTTACGTAC GCATTCTCTGATGACCTCACGCGACTCGTCCAAACCCGTCAAGCATTCTG CCATCATCATTGTGCATGCGTCGCCCTTGTGCTCTACAGATCTAGTACAT ACCCCAAAAAACTGACCCTGTCGAAGTTCTACCTTGTTGATGGGTCGCAG ATATGCTGAGAGAACAAGGCATGCGTGCATGCCCAATGCAACGCTTACTT AAAGCAGCAGCGCTCCCTGCCCTCTCTCACCCTTCCTCCCTTCCTCCAAC CCCCTCACCAAAACACAGTACCCACACACCTCCATCTTCATAATGAAGCT CCTGCTCACGTCCTTTGCTCTCAGCATGGCGAGCGCCTCTGCTTTTTTGG CTCCGCGCCTGCCCGTCCCTCAGGCTTCGACCAAGATGCACTCATCCTCC CTGACCATGGCCATCGACGGGTTCAACGTCGACCTCCGTGGCAAGACTGC CTTTATCGCCGGTGTCGCGGACGCCAATGGGTATGGGTGGGCCATCACGA AACACCTGGCCGAGGCTGGCTGCAAGGTGATTGTCGGCACCTGGCCCCCT GTCCTGGGTATTTTCAAGGCGACCCTGGATTCGGGCAAGCTGGCCGAGGA CTTGAAGACGAGCACGGGGGACAAGTGGGACATCGCCAAGATCTACCCCC TCGACGCCACTTTCGACACCCCCGATGATGTGCCTGAGGCCGTCAAGACC AACAAGCGCTACGCTGGCCTGGGCGGGTACACCATCTCTGAGGTGGCCAA GGAAGTCGAGAAGGACTTCGGTAAGATTGACATTCTCATCCACTCCCTCG CTAACGGGCCTGAAGTCACCAAGCCCCTTTTGGAGACCACCCGCAATGGC TACCTGACTGCCTCCTCGGCCTCGGCCTACTCTATGGTGTCTCTCGTACA GCACTTCGCGCCCATCATGAACGAGGGCGGGTCGGTCCTCTCCCTCACCT ACATCGCCTCGGAGAAGGTCATCCCGGGCTACGGCGGCGGCATGAGCAGC GCCAAGGCCCAGCTGGAGTCGGACACGCGAGTGCTGGCCTTTGAGGCGGG AAGGAAGTACAAGATCCGCGTCAACACCATCTCGGCGGGGCCCTTGAAGA GCCGGGCGGCCAGCGCCATCGGGGGAGGGGAGAAGGGGAAGAAGACCTTC ATCGAGTACGCAATCGACTACAGCCGGGCCAACGCTCCCCTGGCACAAGA CCTGTACGCCGATGATGTAGGCGCCACGGGGCTCTTCCTCTCCTCGCCTA TGGCCCGTTGTGTGACGGGCGTGACCATGTACGTTGACAACGGCCTGCAC GCCATGGGGATGGCGCTTGACTCGGTGGCGATGCAGCAGGAGTAAGGTCC TTCCCTCCTTCCGTCCCTCCTTCTTTCCTTCCTCCCTTCCTTCCTCCCTC CCTCCTTCCCTCCCTCCCTCTGTTCCTCATGATGTTTGTGTCGGGTGTGC ATGAGGGGTGTGGAGGCTCTTGACCTGTGAAAGATGAATGCTGCAGCAGT ATGGCTTGATCTCCCTAGGTCCCTCCCTCCCTCCCCTTCTTCCTCTTTTT CCTCTTCGCTTCTTCTCCGACCGCGATTTGGAGGGAGGACGAAGGGAAGA GGTGGAATTTATGGGGTTGACGTGCGCTGTTATTCTCTATGTGCTATTTG TTGGGCTGTGTTCCTCTGGGCGTGCCTGTCCCGGGGGAGACCGGAGGGGA AAAGGATGGGAGAGGGGGGGCGTATTGTATGGATGGAGCGTATTATATGT ATGCACATACATACACATATATATGTGTGTGTGTGTGTGTCTCTCTGTCT TTGTGTGTGTAGTGATGTGTGGGTGAGGGAAAGATATATATGGGGTCTAG TGCGTGTTAGTGTGTAAGTGTTGGCGTTGGCGTGGATACATGGAGTGCGG GGCCTGAGTCCAGCCGAGACAGGAGGCTTGGTGGAAGCTTTTGTATTGCG ATTGGAAGGGGGAGTGAAGGAGGAGGAAGAGAAGGGGAAGAGGTAGAAGG TGAGGATAGGAGACGAAGGAGGCGAAGGAGGAGAAGATTAGAAGAAAAGA AGAGGAAGAAGAGAAGTTACCTCGATCTCGACGTTAGACTTATGTGAGTG AATCCCTCCATCGCCTTCTTTGACAGAGATGGC back to topprotein sequence of NO23G00560.1 >NO23G00560.1-protein ID=NO23G00560.1-protein|Name=NO23G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp MKLLLTSFALSMASASAFLAPRLPVPQASTKMHSSSLTMAIDGFNVDLRG KTAFIAGVADANGYGWAITKHLAEAGCKVIVGTWPPVLGIFKATLDSGKL AEDLKTSTGDKWDIAKIYPLDATFDTPDDVPEAVKTNKRYAGLGGYTISE VAKEVEKDFGKIDILIHSLANGPEVTKPLLETTRNGYLTASSASAYSMVS LVQHFAPIMNEGGSVLSLTYIASEKVIPGYGGGMSSAKAQLESDTRVLAF EAGRKYKIRVNTISAGPLKSRAASAIGGGEKGKKTFIEYAIDYSRANAPL AQDLYADDVGATGLFLSSPMARCVTGVTMYVDNGLHAMGMALDSVAMQQE * back to topmRNA from alignment at chr23:235123..239383- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00560.1 ID=NO23G00560.1|Name=NO23G00560.1|organism=Nannochloropsis oceanica|type=mRNA|length=4261bp|location=Sequence derived from alignment at chr23:235123..239383- (Nannochloropsis oceanica) CCCCCCACCCGCCGCAGCGCCAGCAGCACTCCCACCCCCATCCGAACGAG
CGCTGCTGGTTCTGCCTAACGCCTCACCCCCACCGTGACGGGCAGGAGAG
GAGGAGGAGGAGGAGGGAGAGGCGCCGATGCTGTAACTCTGGTCGGAGAA
GAGGTCGATGGAGCCGGTACGACCGCGTTTCATTTGATGGTGTGTGCTGA
AAGGCTACCTTGTCGTCGTAGAGCAAATTTACTCGGGACTTGGTTATCTT
CGTGTTTGTTTGCTTGATGTCCTCCTACTGCTGCTGCAGCAGCTGCTCGA
GCAGCTCGAGCTGCTAGACCTGTTGCGGAGAGGAATGCGGTATGACTGTG
CGGGCGGGAAAGGGGAACGGAGAGGAGGCATGATGAGATTAGGAGCGGGC
ATTGTCTTATGTCCCTCTACTATTGTGAGTCTATCAGATGGGGCAACGAT
GTGTGCGTGCTTTTGAGGGGTTCTACTCTGCTGCCCTGGTGTGATGCATG
ATTCTGTAGTGAGGGTAGTAGGGGAGGCGAAATGGGGTGTGGGGAGGTCA
GGAGCTAGGCATGCATTTGTTGGAGAATCTTCCTGGGTATGTCAGCCATG
AATTGGGTGGGGAAATCAAGGCCATATTCACACACAAACCACACATTACA
GTGCTAACATTTCAGGAAGAAGTAAGCTATATGCTCTCTCTCGAAGGCCA
AATGCCTCACTCTTCACTCGCATTTATTTTGTCTCTTCCTATCCGTCCCC
TCCTTTTCCTCCTTCCCCCTGGGCAGGTTTGTCTTCTGCTTTTCCCCCTC
TTTTTCACATCTTCCCTCTCCTTCTCTCTGTCACTTGCTAACTACCCTGA
GTGTCGTATGAGTGATCTCATTTTCACCCAATTTCGAGTTCATTTTTTGG
CGGGAGGGAAAATCGGTTGCTCGTCATCGGCTCGCGTCTTTTGTGTGAGC
GATGCGGCCTTGGATCTGTTGGGCTTCTTTTGCCGTGGTGGTCACTAGTG
ACGACACATTATAAGCCACGCTGCGTGTGGTCGAGCACGCAGCGGCCTTA
GCTGGCCGGCGTGATTGCTGTGAGTTAGTTGTCAAGGATTGCTTACGTAC
GCATTCTCTGATGACCTCACGCGACTCGTCCAAACCCGTCAAGCATTCTG
CCATCATCATTGTGCATGCGTCGCCCTTGTGCTCTACAGATCTAGTACAT
ACCCCAAAAAACTGACCCTGTCGAAGTTCTACCTTGTTGATGGGTCGCAG
ATATGCTGAGAGAACAAGGCATGCGTGCATGCCCAATGCAACGCTTACTT
AAAGCAGCAGCGCTCCCTGCCCTCTCTCACCCTTCCTCCCTTCCTCCAAC
CCCCTCACCAAAACACAGTACCCACACACCTCCATCTTCATAATGAAGCT
CCTGCTCACGTCCTTTGCTCTCAGCATGGCGAGCGCCTCTGCTTTTTTGG
CTCCGCGCCTGCCCGTCCCTCAGGCTTCGACCAAGATGCAGTAAGTCTCT
TGTTGTCTTTTTCTCATCCTGCCCTCCTGTATACTCCGTGTTTCGTGTTC
CTCTGCCCCTCATTCTCTTTCAACATTCATCCATCCTCTCTTCTTAATCG
TTCTCGGCCCATACCACCTGTCCCTCTTCCTTCCACAGCTCATCCTCCCT
GACCATGGCCATCGACGGGTTCAACGTCGACCTCCGTGGCAAGACTGCCT
TTATCGCCGGTGTCGCGGACGCCAATGGGTATGGGTGGGCCATCACGAAA
CACCTGGCCGAGGCTGGCTGCAAGGTGATTGTCGGCACCTGGCCCCCTGT
CCTGGGTACGTGTGTCGATATATTTGACTAATCCTTGAGTATCTTCTTGA
TTGATTCATCCGTCAATTGATTTTTTTTTTTTACTATTACAATTGATTGT
TGTTCTTTTGGCCAGTGCTCTTCATAGATGTTTCCTCTATAGTGTTCTTA
CTGTTCGCATTCATTCATCCCGCCCTATCACCCTCCTTCCACTCCCTCCT
TCCTTTCTTTCCTCCTTCCCTCCTTCCTTTCCTTCCTTCCTTCCTTCCAT
TCCTCCTTCCCTCAGGTATTTTCAAGGCGACCCTGGATTCGGGCAAGCTG
GCCGAGGACTTGAAGACGAGCACGGGGGACAAGTGGGACATCGCCAAGAT
CTACCCCCTCGACGCCACTTTCGACACCCCCGATGATGTGCCTGAGGCCG
TCAAGACCAACAAGCGCTACGCTGGCCTGGGCGGGTACACCATCTCTGAG
GTACGCCCTCGCTCCCTCTTTCTCTCTTTCCCTCCCTTCCTGTCCATTCA
CTAGGATCATGGTGCCCATCAGGTCGTCTTTCCTATGTCCGGCCCCCATC
TACAAATGTCAAGGTTTCCTTCACACTCACCTCTCCCTCCCTTCCACCCT
CCCTCCCTCCCTCCCTCCCCTCCTCCCTTCCACCCATCCTCAGGTGGCCA
AGGAAGTCGAGAAGGACTTCGGTAAGATTGACATTCTCATCCACTCCCTC
GCTAACGGGCCTGAAGTCACCAAGCCCCTTTTGGAGACCACCCGCAATGT
GAGCCAGCCCTCCCTCCGTCCCTTCCTCCCTCCCTCCCTCCCTCCCCCCT
CCCTCCCTTTTTTCCTCCTTCTTCACATCTTTTCCGCTCCATGACCCCCT
CTCTCCTCTGACCTCCTCTTCCTGAATCGTTGTGGACCAAGGCGGTTCCG
TCCCTCTCTCTCCCCTACGTCTGAAATCCAGGGAACGAACAAAAGGAATC
TTTAGAAGATACCATATCTTTTTGAAAAAAAGAAAAATCTCACCCCCAAC
AAACCACACCCACGCAAACAGGGCTACCTGACTGCCTCCTCGGCCTCGGC
CTACTCTATGGTGTCTCTCGTACAGCACTTCGCGCCCATCATGAACGAGG
GCGGGTCGGTCCTCTCCCTCACCTACATCGCCTCGGAGAAGGTCATCCCG
GGCTACGGCGGCGGCATGAGCAGCGCCAAGGCCCAGCTGGAGTCGGACAC
GCGAGTGCTGGCCTTTGAGGCGGGAAGGAAGTACAAGATCCGCGTCAACA
CCATCTCGGCGGGGCCCTTGAAGAGCCGGGCGGCCAGCGCCATCGGGGGA
GGGGAGAAGGGGAAGAAGGTAAGGAAGGAGGGTGGGAGCGAAGGAGGAAG
CGGAGGAGGGTAGGTTGTTTGACGACCCTCTTTTGTAACAATGCAGGTCC
TTGGCAGAGCTGAGGAGTGTTTGGCATCCACTCATCATTCCTATCTTCCC
TCCCTCCCCCCCCCCCCCCCAGACCTTCATCGAGTACGCAATCGACTACA
GCCGGGCCAACGCTCCCCTGGCACAAGACCTGTACGCCGATGATGTAGGC
GCCACGGGGCTCTTCCTCTCCTCGCCTATGGCCCGTTGTGTGACGGGCGT
GACCATGTACGTTGACAACGGCCTGCACGCCATGGGGATGGCGCTTGACT
CGGTGGCGATGCAGCAGGAGTAAGGTCCTTCCCTCCTTCCGTCCCTCCTT
CTTTCCTTCCTCCCTTCCTTCCTCCCTCCCTCCTTCCCTCCCTCCCTCTG
TTCCTCATGATGTTTGTGTCGGGTGTGCATGAGGGGTGTGGAGGCTCTTG
ACCTGTGAAAGATGAATGCTGCAGCAGTATGGCTTGATCTCCCTAGGTCC
CTCCCTCCCTCCCCTTCTTCCTCTTTTTCCTCTTCGCTTCTTCTCCGACC
GCGATTTGGAGGGAGGACGAAGGGAAGAGGTGGAATTTATGGGGTTGACG
TGCGCTGTTATTCTCTATGTGCTATTTGTTGGGCTGTGTTCCTCTGGGCG
TGCCTGTCCCGGGGGAGACCGGAGGGGAAAAGGATGGGAGAGGGGGGGCG
TATTGTATGGATGGAGCGTATTATATGTATGCACATACATACACATATAT
ATGTGTGTGTGTGTGTGTCTCTCTGTCTTTGTGTGTGTAGTGATGTGTGG
GTGAGGGAAAGATATATATGGGGTCTAGTGCGTGTTAGTGTGTAAGTGTT
GGCGTTGGCGTGGATACATGGAGTGCGGGGCCTGAGTCCAGCCGAGACAG
GAGGCTTGGTGGAAGCTTTTGTATTGCGATTGGAAGGGGGAGTGAAGGAG
GAGGAAGAGAAGGGGAAGAGGTAGAAGGTGAGGATAGGAGACGAAGGAGG
CGAAGGAGGAGAAGATTAGAAGAAAAGAAGAGGAAGAAGAGAAGTTACCT
CGATCTCGACGTTAGACTTATGTGAGTGAATCCCTCCATCGCCTTCTTTG
ACAGAGATGGC back to topCoding sequence (CDS) from alignment at chr23:235123..239383- >NO23G00560.1 ID=NO23G00560.1|Name=NO23G00560.1|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at chr23:235123..239383- (Nannochloropsis oceanica) ATGAAGCTCCTGCTCACGTCCTTTGCTCTCAGCATGGCGAGCGCCTCTGC TTTTTTGGCTCCGCGCCTGCCCGTCCCTCAGGCTTCGACCAAGATGCACT CATCCTCCCTGACCATGGCCATCGACGGGTTCAACGTCGACCTCCGTGGC AAGACTGCCTTTATCGCCGGTGTCGCGGACGCCAATGGGTATGGGTGGGC CATCACGAAACACCTGGCCGAGGCTGGCTGCAAGGTGATTGTCGGCACCT GGCCCCCTGTCCTGGGTATTTTCAAGGCGACCCTGGATTCGGGCAAGCTG GCCGAGGACTTGAAGACGAGCACGGGGGACAAGTGGGACATCGCCAAGAT CTACCCCCTCGACGCCACTTTCGACACCCCCGATGATGTGCCTGAGGCCG TCAAGACCAACAAGCGCTACGCTGGCCTGGGCGGGTACACCATCTCTGAG GTGGCCAAGGAAGTCGAGAAGGACTTCGGTAAGATTGACATTCTCATCCA CTCCCTCGCTAACGGGCCTGAAGTCACCAAGCCCCTTTTGGAGACCACCC GCAATGGCTACCTGACTGCCTCCTCGGCCTCGGCCTACTCTATGGTGTCT CTCGTACAGCACTTCGCGCCCATCATGAACGAGGGCGGGTCGGTCCTCTC CCTCACCTACATCGCCTCGGAGAAGGTCATCCCGGGCTACGGCGGCGGCA TGAGCAGCGCCAAGGCCCAGCTGGAGTCGGACACGCGAGTGCTGGCCTTT GAGGCGGGAAGGAAGTACAAGATCCGCGTCAACACCATCTCGGCGGGGCC CTTGAAGAGCCGGGCGGCCAGCGCCATCGGGGGAGGGGAGAAGGGGAAGA AGACCTTCATCGAGTACGCAATCGACTACAGCCGGGCCAACGCTCCCCTG GCACAAGACCTGTACGCCGATGATGTAGGCGCCACGGGGCTCTTCCTCTC CTCGCCTATGGCCCGTTGTGTGACGGGCGTGACCATGTACGTTGACAACG GCCTGCACGCCATGGGGATGGCGCTTGACTCGGTGGCGATGCAGCAGGAG TAA back to top
|