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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr23 | genome | chr23:84259..87005 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00190.1 vs.
Match: WP_104009592.1 (phosphatase PAP2 family protein [Nitrosospira multiformis]) HSP 1 Score: 183.3 bits (464), Expect = 2.300e-42 Identity = 145/391 (37.08%), Postives = 195/391 (49.87%), Query Frame = 0
Query: 30 WNQLILDQFLEKLTGSPFNTSRAIAGMHLAQWNTVKEIL-LQQDLTPDSPNLPISSLLPALQTGVAAAAKTVLV------DGQFVPAGAMAAIEALYDSQVDLTLTAAINIGVTAGQDIIAMRANDGSTA--PNPNSNGDNSTCGVWRSTPSEFAIAAFPQWRSVTPWAMEAPSQFRLPPPPDFQESSIYQEAYNEVMRLGRKVSAFRTEEETMTARFWMMNVQVYT-----NELVRELT--VDYDLVKAARYFVTNAIAFADAAIAGWDTKYEYSFWRPITAIRLGNCMNDTAKFPMDETWEPLLETPAHPEYMAGHSTTSAACIEALRFLNGGDTIPAVTITSPMMPMMGGRTFTSLTAIANEITRSRVLGGAHFSFSTAAGQTLGRQL 405
WN L+ +T P T R +A + LA ++++ I Q L S P+S+ VAAAA VL G F A A + + D A I +G ++A+R NDG+ P S + G WR T F + PQW +VTP+A+ A +QFR P PP +SS Y ++ EV +G S RT ++T A+FW + YT N++ E+ L AR F IA ADAAIA WD KY Y WRP TAI + N+ A +E W+PLL TPAHPEY++GHST SAA L + G DT + + TS +P + R+F + A A E RSRV GG H+ F+ AGQTLG Q+
Sbjct: 1301 WNSKALEAIRLDVTDPPIAT-RLLAMVSLAIYDSLAAIDGTQAYLVKLSATGPVSA-----DAAVAAAAHRVLTVEYPGQKGTFDAALAASLAKVAEGPAKD----AGIALGTAVADTVLALRGNDGAQTFVDYPGS----TELGKWRPTGPMFDVPDQPQWSTVTPFALSAANQFRPPAPPAL-DSSEYAQSVEEVRSVGSANSTTRTADQTEQAQFWADGMGSYTPPGHWNQIAEEIARAQGNSLSANARLFAMLNIALADAAIACWDAKYTYGLWRPETAINNADLDNNAATIK-EEGWKPLLITPAHPEYVSGHSTFSAAAAGILNQVFGNDT--SFSTTSYTLPGV-TRSFDNFDAAAGEAGRSRVYGGIHYEFTNQAGQTLGHQV 1672
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00190.1 ID=NO23G00190.1|Name=NO23G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp
AACAGACTCGCGATAAAATCCGTGCGGCGGTAACCATGCGCTTCGACCTC
CTCGCTTGCCTTTTGGCGATTGCGGGCCTGGTTAATGTACCCTTCGCACG
CGCCGACGCAACCATGAATGAATGGAACCAACTGATACTTGACCAATTTC
TGGAAAAGCTAACTGGTTCTCCCTTTAACACCAGCCGTGCCATCGCAGGC
ATGCACCTAGCCCAATGGAATACAGTCAAGGAGATCCTCCTCCAGCAGGA
CCTCACGCCGGATTCACCCAACTTACCCATTTCCAGTCTCCTCCCTGCGC
TGCAGACAGGAGTCGCCGCGGCGGCCAAGACCGTCCTGGTAGATGGACAA
TTCGTGCCTGCTGGTGCAATGGCAGCCATCGAAGCATTGTATGACAGCCA
GGTTGATCTGACTCTGACTGCCGCCATCAATATCGGTGTAACCGCTGGCC
AGGACATCATTGCAATGCGGGCCAATGACGGCTCCACCGCCCCGAACCCT
AACTCCAACGGTGACAACTCGACATGCGGCGTGTGGCGATCCACCCCGTC
CGAATTTGCAATCGCTGCCTTTCCTCAGTGGCGCAGCGTCACGCCGTGGG
CAATGGAGGCCCCGTCCCAGTTCCGCCTCCCACCGCCGCCGGACTTTCAA
GAGTCTAGCATCTACCAGGAAGCCTACAATGAAGTCATGCGTCTCGGCCG
TAAGGTCTCGGCTTTCCGTACGGAGGAGGAGACGATGACCGCCAGATTTT
GGATGATGAACGTTCAAGTATATACGAATGAGCTCGTTCGCGAGTTGACG
GTCGATTACGACCTTGTGAAAGCGGCCCGCTACTTCGTTACCAACGCCAT
TGCCTTCGCCGATGCGGCGATTGCGGGTTGGGATACCAAGTACGAATATA
GCTTCTGGCGACCTATCACTGCCATCCGGCTGGGTAACTGTATGAATGAC
ACTGCAAAGTTTCCCATGGACGAGACCTGGGAGCCGCTCTTAGAAACCCC
CGCCCATCCTGAGTACATGGCCGGTCATTCCACCACATCGGCAGCCTGTA
TCGAGGCCCTACGGTTCCTCAACGGGGGTGACACCATCCCTGCTGTCACC
ATTACGAGTCCCATGATGCCAATGATGGGTGGACGGACCTTCACGAGCCT
CACTGCCATTGCCAACGAAATAACGCGGTCACGCGTTCTGGGCGGAGCGC
ACTTCTCCTTCTCCACCGCGGCAGGGCAGACGCTTGGACGGCAATTGGGT
GCTAATACTGTCAAGGTCTTGGGCGTGGGTGGCTGCGGTGCGGGTATGTA
TGCATGGGGTAGCGCCTGCTTGCCATGCCAGATGGACACGTACTGGCCTA
GCGAACTCTTTACCGACAGCTGTACGCCATGCACCACTGGCTTCGCCTCT
CCCATGGGTGCGAGTGCCTGTGCGCCTCGTCTCTCAATTGCGTTGCGCGC
CAACGGAGAAGAATTTGAAGGCGAGGCCAGCGAAGATGATGGGATGATGA
TGCCCATGTCCGCGGCGTCTGCATCCTCCGCCTCTGTGTCTACTGCAGCC
GCCCGTAAAGGCACCACTTTCCTCAATCGTAAGGGCCGGGGTGTCATCCA
GCTCGTGCAGAGGAATGAGCAATCGGTATCCAGTGGGGACTTGGCTGTGG
TCACCCTGACCTTGCCGAGGAAAGTCAAATTTGCCGGCTCCGGGCATACC
ATCAGTTCGAAGACTGGGAAAGTGAAGGAGTTGAGAAAGCCCAAGGTGAG
TGGACGGACACTTACGTGGGAGTACGCTCCGCTCGCGGCCGGTGAGGAAA
ATGTCTTTACCATCAAGGTACGTGTGCATGAGCAAGTATCGAGCTGGCTG
ACGTTCCAAGCCTCTACCTACTACGTGACTTCTGACAATACCGGGTGTAT
GAGTGACATGAACGGCATGGACGGAATGATTTCAATGTCCTATGGCCTGA
ACGCTCGGACTTTCAATGTCCCCGTTAACTAAACTGATGGAAAATATCAT
GTTATTTAATATAATAATGGGATTTGGGTTGCGTTGTCCTCAGGGAAAGA
ATACTATAGGGCAAATACTATAGGGCTAGGGACATCCCGGACAGATTTTG
CACATATCCGATCGATGAGTAGTGGGAGGGGGGAAAAGGAATAAGAAATA
TCGTAACCCTATGGTAGTTTCTCCATGTCCTTCTGGCATGGAAGCAGTGG
AGGTAGCACGATGAGTAGTGAGAGATAAAGAAAA back to topprotein sequence of NO23G00190.1 >NO23G00190.1-protein ID=NO23G00190.1-protein|Name=NO23G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=649bp
MRFDLLACLLAIAGLVNVPFARADATMNEWNQLILDQFLEKLTGSPFNTS
RAIAGMHLAQWNTVKEILLQQDLTPDSPNLPISSLLPALQTGVAAAAKTV
LVDGQFVPAGAMAAIEALYDSQVDLTLTAAINIGVTAGQDIIAMRANDGS
TAPNPNSNGDNSTCGVWRSTPSEFAIAAFPQWRSVTPWAMEAPSQFRLPP
PPDFQESSIYQEAYNEVMRLGRKVSAFRTEEETMTARFWMMNVQVYTNEL
VRELTVDYDLVKAARYFVTNAIAFADAAIAGWDTKYEYSFWRPITAIRLG
NCMNDTAKFPMDETWEPLLETPAHPEYMAGHSTTSAACIEALRFLNGGDT
IPAVTITSPMMPMMGGRTFTSLTAIANEITRSRVLGGAHFSFSTAAGQTL
GRQLGANTVKVLGVGGCGAGMYAWGSACLPCQMDTYWPSELFTDSCTPCT
TGFASPMGASACAPRLSIALRANGEEFEGEASEDDGMMMPMSAASASSAS
VSTAAARKGTTFLNRKGRGVIQLVQRNEQSVSSGDLAVVTLTLPRKVKFA
GSGHTISSKTGKVKELRKPKVSGRTLTWEYAPLAAGEENVFTIKVRVHEQ
VSSWLTFQASTYYVTSDNTGCMSDMNGMDGMISMSYGLNARTFNVPVN* back to topmRNA from alignment at chr23:84259..87005- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00190.1 ID=NO23G00190.1|Name=NO23G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2747bp|location=Sequence derived from alignment at chr23:84259..87005- (Nannochloropsis oceanica)
AACAGACTCGCGATAAAATCCGTGCGGCGGTAACCATGCGCTTCGACCTC
CTCGCTTGCCTTTTGGCGATTGCGGGCCTGGTTAATGTACCCTTCGCACG
CGCCGACGCAACCATGAATGAATGGAACCAACTGATACTTGACCAATTTC
TGGAAAAGCTAACTGGTTCTCCCTTTGTAAGTAATTTGTATCATGTTTGG
TTTGGGATGTGGCGGAGGGGCGAGGGATGAAGTGAGGTGATGGGGTAGAA
TGTCTCATCTTCATACAAATACGCAAACACGCGCACACCGCATTCAATGC
AGAACACCAGCCGTGCCATCGCAGGCATGCACCTAGCCCAATGGAATACA
GTCAAGGAGATCCTCCTCCAGCAGGACCTCACGCCGGATTCACCCAACTT
ACCCATTTCCAGTCTCCTCCCTGCGCTGCAGACAGGAGTCGCCGCGGCGG
CCAAGACCGTCCTGGTAGATGGACAATTCGTGCCTGCTGGTGCAATGGCA
GCCATCGAAGCATTGTATGACAGCCAGGTTGATCTGACTCTGACTGCCGC
CATCAATATCGGTGTAACCGCTGGCCAGGACATCATTGCAATGCGGGCCA
ATGACGGCTCCACCGCCCCGAACCCTAACTCCAACGGTAAGGCGTTTCAT
ATGGTAGAAAATGACCTCAAAGTCCCACTTTGATAGATTTTTCGATCACA
TTCTGATAAACATATGCAAAGGTGACAACTCGACATGCGGCGTGTGGCGA
TCCACCCCGTCCGAATTTGCAATCGCTGCCTTTCCTCAGTGGCGCAGCGT
CACGCCGTGGGCAATGGAGGCCCCGTCCCAGTTCCGCCTCCCACCGCCGC
CGGACTTTCAAGAGTCTAGCATCTACCAGGAAGCCTACAATGAAGTCATG
CGTCTCGGCCGTAAGGTCTCGGCTTTCCGTACGGAGGAGGAGACGATGAC
CGCCAGATTTTGGTACGTAGCGAGTGAAGAAATCATAGGCTAGGTTTCAG
ACAGTGGACCAGAGGGACAGTTTCACTAATTCTGATATTCTGCACGTATA
TTTATTGCCCACAGGATGATGAACGTTCAAGTATATACGAATGAGCTCGT
TCGCGAGGTAAATATGAATATAAAGCAACATCCTTATGAATACACATATA
TGATATGTTTGCACATCTGATAGTATATGACTTAATCCACCGACCTCAAT
TTCAAACAGTTGACGGTCGATTACGACCTTGTGAAAGCGGCCCGCTACTT
CGTTACCAACGCCATTGCCTTCGCCGATGCGGCGATTGCGGGTTGGGATA
CCAAGTACGAATATAGCTTCTGGCGACCTATCACTGCCATCCGGCTGGGT
AACTGGTGAGTGTGTAGATTCGTGAGATGATCTTATTCAATTGTCGACTC
CACACATAACTCATCTTCTGGTTCCCTGAAATCTCCACTCCGTGATTGAT
CAGTATGAATGACACTGCAAAGTTTCCCATGGACGAGACCTGGGAGCCGC
TCTTAGAAACCCCCGCCCATCCTGAGTACATGGCCGGTCATTCCACCACA
TCGGCAGCCTGTATCGAGGCCCTACGGTTCCTCAACGGGGGTGACACCAT
CCCTGCTGTCACCATTACGAGTCCCATGATGCCAATGATGGGTGGACGGA
CCTTCACGAGCCTCACTGCCATTGCCAACGAAATAACGCGGTCACGCGTT
CTGGGCGGAGCGCACTTCTCCTTCTCCACCGCGGCAGGGCAGACGCTTGG
ACGGCAATTGGGTGCTAATACTGTCAAGGTCTTGGGCGTGGGTGGCTGCG
GTGCGGGTATGTATGCATGGGGTAGCGCCTGCTTGCCATGCCAGATGGAC
ACGTACTGGCCTAGCGAACTCTTTACCGACAGCTGTACGCCATGCACCAC
TGGCTTCGCCTCTCCCATGGGTGCGAGTGCCTGTGCGCCTCGTCTCTCAA
TTGCGTTGCGCGCCAACGGAGAAGAATTTGAAGGCGAGGCCAGCGAAGAT
GATGGGATGATGATGCCCATGTCCGCGGCGTCTGCATCCTCCGCCTCTGT
GTCTACTGCAGCCGCCCGTAAAGGCACCACTTTCCTCAATCGTAAGGGCC
GGGGTGTCATCCAGCTCGTGCAGAGGAATGAGCAATCGGTATCCAGTGGG
GACTTGGCTGTGGTCACCCTGACCTTGCCGAGGAAAGTCAAATTTGCCGG
CTCCGGGCATACCATCAGTTCGAAGACTGGGAAAGTGAAGGAGTTGAGAA
AGCCCAAGGTGAGTGGACGGACACTTACGTGGGAGTACGCTCCGCTCGCG
GCCGGTGAGGAAAATGTCTTTACCATCAAGGTACGTGTGCATGAGCAAGT
ATCGAGCTGGCTGACGTTCCAAGCCTCTACCTACTACGTGACTTCTGACA
ATACCGGGTGTATGAGTGACATGAACGGCATGGACGGAATGATTTCAATG
TCCTATGGCCTGAACGCTCGGACTTTCAATGTCCCCGTTAACTAAACTGA
TGGAAAATATCATGTTATTTAATATAATAATGGGATTTGGGTTGCGTTGT
CCTCAGGGAAAGAATACTATAGGGCAAATACTATAGGGCTAGGGACATCC
CGGACAGATTTTGCACATATCCGATCGATGAGTAGTGGGAGGGGGGAAAA
GGAATAAGAAATATCGTAACCCTATGGTAGTTTCTCCATGTCCTTCTGGC
ATGGAAGCAGTGGAGGTAGCACGATGAGTAGTGAGAGATAAAGAAAA back to topCoding sequence (CDS) from alignment at chr23:84259..87005- >NO23G00190.1 ID=NO23G00190.1|Name=NO23G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=1947bp|location=Sequence derived from alignment at chr23:84259..87005- (Nannochloropsis oceanica)
ATGCGCTTCGACCTCCTCGCTTGCCTTTTGGCGATTGCGGGCCTGGTTAA
TGTACCCTTCGCACGCGCCGACGCAACCATGAATGAATGGAACCAACTGA
TACTTGACCAATTTCTGGAAAAGCTAACTGGTTCTCCCTTTAACACCAGC
CGTGCCATCGCAGGCATGCACCTAGCCCAATGGAATACAGTCAAGGAGAT
CCTCCTCCAGCAGGACCTCACGCCGGATTCACCCAACTTACCCATTTCCA
GTCTCCTCCCTGCGCTGCAGACAGGAGTCGCCGCGGCGGCCAAGACCGTC
CTGGTAGATGGACAATTCGTGCCTGCTGGTGCAATGGCAGCCATCGAAGC
ATTGTATGACAGCCAGGTTGATCTGACTCTGACTGCCGCCATCAATATCG
GTGTAACCGCTGGCCAGGACATCATTGCAATGCGGGCCAATGACGGCTCC
ACCGCCCCGAACCCTAACTCCAACGGTGACAACTCGACATGCGGCGTGTG
GCGATCCACCCCGTCCGAATTTGCAATCGCTGCCTTTCCTCAGTGGCGCA
GCGTCACGCCGTGGGCAATGGAGGCCCCGTCCCAGTTCCGCCTCCCACCG
CCGCCGGACTTTCAAGAGTCTAGCATCTACCAGGAAGCCTACAATGAAGT
CATGCGTCTCGGCCGTAAGGTCTCGGCTTTCCGTACGGAGGAGGAGACGA
TGACCGCCAGATTTTGGATGATGAACGTTCAAGTATATACGAATGAGCTC
GTTCGCGAGTTGACGGTCGATTACGACCTTGTGAAAGCGGCCCGCTACTT
CGTTACCAACGCCATTGCCTTCGCCGATGCGGCGATTGCGGGTTGGGATA
CCAAGTACGAATATAGCTTCTGGCGACCTATCACTGCCATCCGGCTGGGT
AACTGTATGAATGACACTGCAAAGTTTCCCATGGACGAGACCTGGGAGCC
GCTCTTAGAAACCCCCGCCCATCCTGAGTACATGGCCGGTCATTCCACCA
CATCGGCAGCCTGTATCGAGGCCCTACGGTTCCTCAACGGGGGTGACACC
ATCCCTGCTGTCACCATTACGAGTCCCATGATGCCAATGATGGGTGGACG
GACCTTCACGAGCCTCACTGCCATTGCCAACGAAATAACGCGGTCACGCG
TTCTGGGCGGAGCGCACTTCTCCTTCTCCACCGCGGCAGGGCAGACGCTT
GGACGGCAATTGGGTGCTAATACTGTCAAGGTCTTGGGCGTGGGTGGCTG
CGGTGCGGGTATGTATGCATGGGGTAGCGCCTGCTTGCCATGCCAGATGG
ACACGTACTGGCCTAGCGAACTCTTTACCGACAGCTGTACGCCATGCACC
ACTGGCTTCGCCTCTCCCATGGGTGCGAGTGCCTGTGCGCCTCGTCTCTC
AATTGCGTTGCGCGCCAACGGAGAAGAATTTGAAGGCGAGGCCAGCGAAG
ATGATGGGATGATGATGCCCATGTCCGCGGCGTCTGCATCCTCCGCCTCT
GTGTCTACTGCAGCCGCCCGTAAAGGCACCACTTTCCTCAATCGTAAGGG
CCGGGGTGTCATCCAGCTCGTGCAGAGGAATGAGCAATCGGTATCCAGTG
GGGACTTGGCTGTGGTCACCCTGACCTTGCCGAGGAAAGTCAAATTTGCC
GGCTCCGGGCATACCATCAGTTCGAAGACTGGGAAAGTGAAGGAGTTGAG
AAAGCCCAAGGTGAGTGGACGGACACTTACGTGGGAGTACGCTCCGCTCG
CGGCCGGTGAGGAAAATGTCTTTACCATCAAGGTACGTGTGCATGAGCAA
GTATCGAGCTGGCTGACGTTCCAAGCCTCTACCTACTACGTGACTTCTGA
CAATACCGGGTGTATGAGTGACATGAACGGCATGGACGGAATGATTTCAA
TGTCCTATGGCCTGAACGCTCGGACTTTCAATGTCCCCGTTAACTAA back to top
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