NO23G00170.1, NO23G00170.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO23G00170.1
Unique Name	NO23G00170.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1680
Alignment location	chr23:79858..82059 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr23	genome	chr23:79858..82059 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO23G00170.1 vs.
Match: XP_005852517.1 (hypothetical protein NGA_0683000, partial [Nannochloropsis gaditana CCMP526]; EKU23314.1 hypothetical protein NGA_0683000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 406.4 bits (1043), Expect = 1.400e-109
Identity = 206/320 (64.38%), Postives = 238/320 (74.38%), Query Frame = 0

Query:  193 YYHFKSQALLDFSVGIEPVILSLDEENDPKGGKFAKEAASAAAEREEEGVDELLPSFLASKTVMVRTCAEEGGREEG-TRGLVWLPLPGVASFTDKHLEALRFGLCVMRATTTRPPIFFCHGAHEWAMLYHPPSSTHPPPHKYQDALPLRIPQQVLNRFVEERPMRCTHFDAFRFFTPDARPLNIFHDDLSQGRLLGQALHEQPGCLHANMDLFKWAVKLGPYAPSDLLEETLSLAVACRVVDMRASPYDLTVLREISGAELQQQQQQEGYAFPVSPIKIETEEGRREYQAEQQVLFERAQPLRARLIKAYDLFFRAYEA 512
            YYHFKSQ+LLD+S G EPV+L L E          +  +  A ERE+E   + LPS LASK V V+  AE+ G + G  +G+ WLPLPG  SFT KHLEALR G  ++R T +RPP FFCHGAHEWAMLYHP SS HPPP KYQD+LPLRI Q  LN FVE RP+RCTH+DAFRFF P+ARPLN++  DLS+ R  GQ  HEQPGCLHANMDLFKWAVKLGPYAPSDLL +TL LAVACRVVDMRASPYDL+ L    G   + +    GY F  SPIKIETEEGR+EYQAEQQ LF++AQPLR RL+  YDLFFR +E+
Sbjct:    1 YYHFKSQSLLDYSAGGEPVVLLLGEAGSEGD---TQRDSGGAGEREKEEATDCLPSILASKVVPVQ--AEKAGAKYGMVQGVGWLPLPGRVSFTRKHLEALRLGREILRTTQSRPPFFFCHGAHEWAMLYHPTSSAHPPPRKYQDSLPLRISQTTLNGFVESRPIRCTHYDAFRFFAPEARPLNVWGQDLSEARSHGQLAHEQPGCLHANMDLFKWAVKLGPYAPSDLLRQTLELAVACRVVDMRASPYDLSPLVLPVG---KGRGLPSGYRFDASPIKIETEEGRKEYQAEQQALFDKAQPLRTRLLNVYDLFFRMWES 312

The following BLAST results are available for this feature:

BLAST of NO23G00170.1 vs.

BLAST of NO23G00170.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005852517.1	1.400e-109	64.38	hypothetical protein NGA_0683000, partial [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO23G00170	NO23G00170	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00170.1	NO23G00170.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO23G00170.1.cds1	NO23G00170.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00170.1.cds2	NO23G00170.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00170.1.cds3	NO23G00170.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO23G00170.1.cds4	NO23G00170.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr23:79858..82059-
coding sequence from alignment at chr23:79858..82059-

mRNA sequence

>NO23G00170.1 ID=NO23G00170.1|Name=NO23G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=1680bp
AAACCACAGGATAAGAGACATGAACCCTTGGTCGAAGCCGCACGAAAAAG
AGAAGGGGTTCTCAAGGATCTGAGGCGGGGAAGGATGCAACAAACTTGTC
GTTCTGCTGCTGCTGCCGCTCCTAGTATCCCAACCAGTGCACTTCTCCCT
CCCCTCCCTTTGCTGCACCTCATCCTCCTCGTCCTTCTCCTCATCCCAGT
GCGACCTCTAGCAATGCCAGTCACCTTCAACAGACTATCTACGCTGGCTA
CCGCTGCACGGGTCCGGACAATTGCTGCCCACTCATCCCATTCCTTGGCT
TTTGCCACCAGAGCTTCTCCCTCCTCTCTTCCCTCGTCCTCCTGCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTGCCAACCCT
CCCTCGTCGCCTTCCTATTGTCTTCCCCGACTCACACTTGATACCAGGAC
AACACAGCGTCTCTGGGGCATAAATCCCGAGGAGATGACTTGCTTGCCGC
GGGCCGCATGGGAGGCCAAGGCCCGAGAGCACAAGTCAAGGATGCTGGCT
CTGATGGGAGGGAGCACCAGGCATGACCACGGCAACCCGATATTCAACTT
CTTATTTGAGTACTACCACTTTAAGTCTCAAGCCCTACTGGACTTTTCGG
TGGGAATTGAGCCTGTAATCCTCTCGCTGGATGAGGAAAATGACCCAAAG
GGAGGGAAATTCGCGAAAGAAGCAGCTTCTGCTGCAGCAGAAAGAGAAGA
GGAAGGGGTAGACGAGCTCTTGCCAAGCTTCCTAGCGAGCAAGACCGTAA
TGGTTCGGACGTGTGCAGAGGAGGGAGGGAGGGAGGAAGGAACTCGAGGA
CTGGTATGGCTGCCGTTACCGGGGGTGGCGTCATTTACCGACAAGCATTT
AGAGGCTTTGCGCTTCGGCTTGTGTGTGATGCGCGCGACGACCACACGGC
CGCCCATCTTCTTTTGTCATGGCGCGCACGAGTGGGCGATGCTCTATCAC
CCGCCCTCTTCTACCCACCCACCGCCCCATAAATACCAAGATGCCTTGCC
TTTGCGCATACCCCAACAAGTCTTGAATCGCTTCGTGGAAGAGCGCCCGA
TGCGCTGCACGCATTTTGACGCGTTTCGGTTTTTCACCCCTGACGCCCGT
CCCCTGAATATCTTTCACGACGACTTGAGTCAGGGTCGACTGCTTGGGCA
AGCGTTACATGAACAGCCGGGATGTTTACACGCAAATATGGATTTGTTCA
AATGGGCAGTTAAATTGGGCCCGTATGCGCCCAGCGACCTGCTGGAGGAA
ACCTTGTCATTGGCGGTGGCGTGTCGGGTGGTGGATATGCGGGCGTCTCC
TTATGATCTAACTGTGCTCCGAGAAATAAGCGGTGCTGAACTACAGCAGC
AGCAGCAGCAGGAGGGATATGCATTCCCAGTATCGCCTATTAAGATCGAA
ACGGAAGAGGGACGGAGGGAGTACCAGGCGGAGCAGCAGGTGCTGTTTGA
GAGAGCGCAGCCATTGCGAGCGCGTCTGATAAAGGCTTATGACTTATTTT
TCAGGGCCTACGAGGCAGGGAGGGAGGAAGGAAAAGACGAAATCGCCGAG
AAAAAAAGAGGCATTATAGGACATGAATGA

protein sequence of NO23G00170.1

>NO23G00170.1-protein ID=NO23G00170.1-protein|Name=NO23G00170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MQQTCRSAAAAAPSIPTSALLPPLPLLHLILLVLLLIPVRPLAMPVTFNR
LSTLATAARVRTIAAHSSHSLAFATRASPSSLPSSSCSSSSSSSSSSSSS
SSFSSSSSSSSSSSSSSSLANPPSSPSYCLPRLTLDTRTTQRLWGINPEE
MTCLPRAAWEAKAREHKSRMLALMGGSTRHDHGNPIFNFLFEYYHFKSQA
LLDFSVGIEPVILSLDEENDPKGGKFAKEAASAAAEREEEGVDELLPSFL
ASKTVMVRTCAEEGGREEGTRGLVWLPLPGVASFTDKHLEALRFGLCVMR
ATTTRPPIFFCHGAHEWAMLYHPPSSTHPPPHKYQDALPLRIPQQVLNRF
VEERPMRCTHFDAFRFFTPDARPLNIFHDDLSQGRLLGQALHEQPGCLHA
NMDLFKWAVKLGPYAPSDLLEETLSLAVACRVVDMRASPYDLTVLREISG
AELQQQQQQEGYAFPVSPIKIETEEGRREYQAEQQVLFERAQPLRARLIK
AYDLFFRAYEAGREEGKDEIAEKKRGIIGHE*

mRNA from alignment at chr23:79858..82059-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO23G00170.1 ID=NO23G00170.1|Name=NO23G00170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2202bp|location=Sequence derived from alignment at chr23:79858..82059- (Nannochloropsis oceanica)
AAACCACAGGATAAGAGACATGAACCCTTGGTCGAAGCCGCACGAAAAAG
AGAAGGGGTTCTCAAGGATCTGAGGCGGGGAAGGATGCAACAAACTTGTC
GTTCTGCTGCTGCTGCCGCTCCTAGTATCCCAACCAGTGCACTTCTCCCT
CCCCTCCCTTTGCTGCACCTCATCCTCCTCGTCCTTCTCCTCATCCCAGT
GCGACCTCTAGCAATGCCAGTCACCTTCAACAGACTATCTACGCTGGCTA
CCGCTGCACGGGTCCGGACAATTGCTGCCCACTCATCCCATTCCTTGGCT
TTTGCCACCAGAGCTTCTCCCTCCTCTCTTCCCTCGTCCTCCTGCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTTGCCAACCCT
CCCTCGTCGCCTTCCTATTGTCTTCCCCGACTCACACTTGATACCAGGAC
AACACAGCGTCTCTGGGGCATAAATCCCGAGGAGATGACTTGCTTGCCGC
GGGCCGCATGGGAGGCCAAGGCCCGAGAGCACAAGTCAAGGATGCTGGCT
CTGATGGGAGGGAGCACCAGGCATGACCACGGCAACCCGGTAATGAGATA
GTAGGGAGTTGTGGAGGAGGGAGGGAGGAACAGAATGGAACGTTTCCTTG
CACTGATGTCGATACCGCCATTTACTGTAAGCGTACACTCATACATCTCC
CTCTTGTTTCCCTATCGTCCTCACTACTGGTTGGTACAGATATTCAACTT
CTTATTTGAGGTAAAGGCAGCAAATACACAGAATGGATGGAGAGGGCGAA
GGAATGAAGAGCTATGTAGAGTGGTGCATGCCAAATACTCACAAATGATT
CTCACTCTGACATCCCTCTCTCTCCCTGCCTCCCTCCCTCCCTCCCTTCC
TTCCTCCCTCCCTCCCTCCCTCCTGTAGTACTACCACTTTAAGTCTCAAG
CCCTACTGGACTTTTCGGTGGGAATTGAGCCTGTAATCCTCTCGCTGGAT
GAGGAAAATGACCCAAAGGGAGGGAAATTCGCGAAAGAAGCAGCTTCTGC
TGCAGCAGAAAGAGAAGAGGAAGGGGTAGACGAGCTCTTGCCAAGCTTCC
TAGCGAGCAAGACCGTAATGGTTCGGACGTGTGCAGAGGAGGGAGGGAGG
GAGGAAGGAACTCGAGGACTGGTATGGCTGCCGTTACCGGGGGTGGCGTC
ATTTACCGACAAGCATTTAGAGGCTTTGCGCTTCGGCTTGTGTGTGATGC
GCGCGACGACCACACGGCCGCCCATCTTCTTTTGTCATGGCGCGCACGAG
GTAAGGGCATCCATCCACGGGTTTGCTCCAAGGCAGGAGATTCAGAGGGA
GATGTTCAAATGACTTGTCAGCGTTTGTCCTTGTTTTGCTCGCCTGTCTC
TGTATCCGAGTGGACGTGAGATTGAAATTGACGGTTTTTCAAATATCGGG
GTCTCACGTCCCTTCCCCACCCTCCTCCCTCTTCCTTCCCTCCGCAACCC
ACAGTGGGCGATGCTCTATCACCCGCCCTCTTCTACCCACCCACCGCCCC
ATAAATACCAAGATGCCTTGCCTTTGCGCATACCCCAACAAGTCTTGAAT
CGCTTCGTGGAAGAGCGCCCGATGCGCTGCACGCATTTTGACGCGTTTCG
GTTTTTCACCCCTGACGCCCGTCCCCTGAATATCTTTCACGACGACTTGA
GTCAGGGTCGACTGCTTGGGCAAGCGTTACATGAACAGCCGGGATGTTTA
CACGCAAATATGGATTTGTTCAAATGGGCAGTTAAATTGGGCCCGTATGC
GCCCAGCGACCTGCTGGAGGAAACCTTGTCATTGGCGGTGGCGTGTCGGG
TGGTGGATATGCGGGCGTCTCCTTATGATCTAACTGTGCTCCGAGAAATA
AGCGGTGCTGAACTACAGCAGCAGCAGCAGCAGGAGGGATATGCATTCCC
AGTATCGCCTATTAAGATCGAAACGGAAGAGGGACGGAGGGAGTACCAGG
CGGAGCAGCAGGTGCTGTTTGAGAGAGCGCAGCCATTGCGAGCGCGTCTG
ATAAAGGCTTATGACTTATTTTTCAGGGCCTACGAGGCAGGGAGGGAGGA
AGGAAAAGACGAAATCGCCGAGAAAAAAAGAGGCATTATAGGACATGAAT
GA

Coding sequence (CDS) from alignment at chr23:79858..82059-

>NO23G00170.1 ID=NO23G00170.1|Name=NO23G00170.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr23:79858..82059- (Nannochloropsis oceanica)
ATGCAACAAACTTGTCGTTCTGCTGCTGCTGCCGCTCCTAGTATCCCAAC
CAGTGCACTTCTCCCTCCCCTCCCTTTGCTGCACCTCATCCTCCTCGTCC
TTCTCCTCATCCCAGTGCGACCTCTAGCAATGCCAGTCACCTTCAACAGA
CTATCTACGCTGGCTACCGCTGCACGGGTCCGGACAATTGCTGCCCACTC
ATCCCATTCCTTGGCTTTTGCCACCAGAGCTTCTCCCTCCTCTCTTCCCT
CGTCCTCCTGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCGTCGTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCCTTGCCAACCCTCCCTCGTCGCCTTCCTATTGTCTTCCCCGACTCA
CACTTGATACCAGGACAACACAGCGTCTCTGGGGCATAAATCCCGAGGAG
ATGACTTGCTTGCCGCGGGCCGCATGGGAGGCCAAGGCCCGAGAGCACAA
GTCAAGGATGCTGGCTCTGATGGGAGGGAGCACCAGGCATGACCACGGCA
ACCCGATATTCAACTTCTTATTTGAGTACTACCACTTTAAGTCTCAAGCC
CTACTGGACTTTTCGGTGGGAATTGAGCCTGTAATCCTCTCGCTGGATGA
GGAAAATGACCCAAAGGGAGGGAAATTCGCGAAAGAAGCAGCTTCTGCTG
CAGCAGAAAGAGAAGAGGAAGGGGTAGACGAGCTCTTGCCAAGCTTCCTA
GCGAGCAAGACCGTAATGGTTCGGACGTGTGCAGAGGAGGGAGGGAGGGA
GGAAGGAACTCGAGGACTGGTATGGCTGCCGTTACCGGGGGTGGCGTCAT
TTACCGACAAGCATTTAGAGGCTTTGCGCTTCGGCTTGTGTGTGATGCGC
GCGACGACCACACGGCCGCCCATCTTCTTTTGTCATGGCGCGCACGAGTG
GGCGATGCTCTATCACCCGCCCTCTTCTACCCACCCACCGCCCCATAAAT
ACCAAGATGCCTTGCCTTTGCGCATACCCCAACAAGTCTTGAATCGCTTC
GTGGAAGAGCGCCCGATGCGCTGCACGCATTTTGACGCGTTTCGGTTTTT
CACCCCTGACGCCCGTCCCCTGAATATCTTTCACGACGACTTGAGTCAGG
GTCGACTGCTTGGGCAAGCGTTACATGAACAGCCGGGATGTTTACACGCA
AATATGGATTTGTTCAAATGGGCAGTTAAATTGGGCCCGTATGCGCCCAG
CGACCTGCTGGAGGAAACCTTGTCATTGGCGGTGGCGTGTCGGGTGGTGG
ATATGCGGGCGTCTCCTTATGATCTAACTGTGCTCCGAGAAATAAGCGGT
GCTGAACTACAGCAGCAGCAGCAGCAGGAGGGATATGCATTCCCAGTATC
GCCTATTAAGATCGAAACGGAAGAGGGACGGAGGGAGTACCAGGCGGAGC
AGCAGGTGCTGTTTGAGAGAGCGCAGCCATTGCGAGCGCGTCTGATAAAG
GCTTATGACTTATTTTTCAGGGCCTACGAGGCAGGGAGGGAGGAAGGAAA
AGACGAAATCGCCGAGAAAAAAAGAGGCATTATAGGACATGAATGA

Synonyms

Publications