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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:75012..79097 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00160.1 vs.
Match: EEH11064.1 (glucan 1,3-beta-glucosidase precursor [Histoplasma capsulatum G186AR]) HSP 1 Score: 175.6 bits (444), Expect = 3.500e-40 Identity = 124/386 (32.12%), Postives = 179/386 (46.37%), Query Frame = 0
Query: 77 RGVNLGGWLVLESWMYPDWWHMTGVPLWKGEFQFNEILKDKALPLLRAHWDQWVTRDELVRLKDAGITYLRIPIGYWILGKEWLLPGDTYQPGGWPYLERALGWASELGLKCIIDLHGAPGAQNGNDNSGFSGGNTAINWTQPSNLARTTDVLVYLAQNLTKLNASKEMEGSIAGLCLLNEPWTTAVGGPVQLDTLKSWLQTTTDAVLATGWKGDVWFPDGFALDWDGWRDFLTPPEYPRNIFADAHIYMMFDDAVADLDAAGQAQNFCREDNHYRQQLERAGGVGSGVVVGEYSMDFRKWPTSFPYSNETLTGLQDLLLVQQHLYNVIGDKRENAAVGGFFWSFKSL---GRVDIQTFDQSDLAVDNSFNNLHSPWSYLSLLTDG 460
RGVNLGGWLVLE W+ P + G E+ ++IL A L HW+ W+T D+ ++ AG+T++RIPIGYW + L G+ Y G YL++A+ WA + LK IDLHGAPG+QNG DNSG G +INW + + +A+T + L LA+ + + + +LNEP+ V G V LD +K + V V D F D W F+ P E N+F DAH Y +FD+A C ++ R+Q+ + VGE W + + L G + N KR A G +F S K L +V I+ F ++ L L + W + + T+G
Sbjct: 40 RGVNLGGWLVLEPWITPSVFEKAGDRA-VDEYTLSQILAGNARSRLSEHWNSWITADDFKQIAAAGLTHVRIPIGYWAVAP---LKGEPYVQGQVSYLDKAIRWARQSNLKVAIDLHGAPGSQNGFDNSGRRG---SINWPKGNTVAQTLNALRALAERYA------DQTDVVDSIEILNEPF---VPGGVPLDEVKQFYHKGYKVVRDINPNVGVAISDAFQ-DLRSWNGFMLPSENFHNVFLDAHHYQVFDNAFTSFSVDQHVNLAC---SYGREQVAK---TDKKTFVGE-------WSAAMTDCAKYLNGRDKGARFDKSFPN---GKRSGACGGRYFGSVKQLPDQQKVGIRRFIEAQL----DAYGLGAGWFFWTWKTEG 388
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00160.1 ID=NO23G00160.1|Name=NO23G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp CTAATCTTTCCTCCCTGGCTTGAAGCAAGAGGAAGATTATTATGCATTCA CCCAAGCGCTGTCGCAGCCTTACCGAGATGACAACAAGCTTGTGGCCATA GAAGCTCTTGTGTCCTCAGTGCATCTACTTCGACTTGAACATTTCTTCAC AGGCACGCGTGCTTTTGTCTGATGGGTAATGGTAATCGCGACACAAGTTG AACCGACCGTATTTGAAACAAAAGGCACATGTCCCTCCACTCCACCCAGA ACCCTCTGGTGCAGAGTCCCTGTACACGTAATTCATGCGCGTGCATGGTC TGCAAGGTGACAGTCGCTATATTATCCAGTGATGCGGGTGCTGACAGGGG CCATCGGGTGGCTACCCTTTGTCGAAATCCTCATGATGCTCCACACCACG CCCCCTCACAAATAAGCTATTGCTATATATTCACTCGCTCACACTACACA CACCATCCGCACATAGTCAACGATGCGGCGCCTCTCTTCCTTCTTCTCCG CTCTCCCTTCTCCCTCCTTCCGCCTTTTCCTCCTCATGGTCAGCATTCTC CTGTCCTATTCAGTCGTTGTCGCTTCCCCCTTCCTGTTGCGAGGTGACGC CACGGCCACGGCCGCAGTCATGGAGCGGGAGAAGCTATGGTTAGGGCAGC AGCTGCAACAGCAAGAACAGAAGGAATGGCCCCAAGATGCGCCGCAGTAC CGTGGCGTCAATCTGGGCGGCTGGCTTGTGCTCGAGAGCTGGATGTATCC TGACTGGTGGCATATGACGGGCGTGCCTCTGTGGAAAGGAGAGTTCCAAT TCAACGAAATTTTGAAGGACAAGGCTCTCCCCCTGCTCCGCGCGCATTGG GATCAGTGGGTTACCCGCGACGAGCTCGTCCGCCTCAAGGACGCTGGCAT CACGTACCTCCGCATTCCCATCGGTTACTGGATCCTGGGCAAGGAATGGC TTCTCCCAGGCGATACCTACCAACCCGGTGGATGGCCCTACCTCGAGCGC GCTCTCGGCTGGGCGAGTGAATTGGGTCTTAAATGCATCATAGACCTCCA TGGAGCCCCCGGCGCACAGAATGGGAACGATAACAGCGGGTTTTCAGGCG GCAATACGGCCATCAATTGGACACAGCCGTCCAACCTGGCCAGAACAACG GACGTCCTCGTCTACCTCGCGCAGAACCTCACAAAGCTGAACGCCTCCAA GGAGATGGAAGGCAGCATCGCTGGTCTCTGTCTCCTCAACGAACCGTGGA CTACGGCCGTCGGTGGCCCCGTCCAACTCGACACCCTCAAATCCTGGCTG CAGACCACCACCGATGCCGTTCTCGCCACAGGGTGGAAAGGCGACGTCTG GTTCCCTGACGGCTTTGCCCTAGACTGGGACGGCTGGCGCGATTTTCTCA CGCCTCCCGAATACCCTCGGAATATATTCGCCGATGCCCACATCTACATG ATGTTTGACGACGCCGTGGCCGACCTTGATGCGGCAGGCCAAGCACAGAA TTTTTGCCGGGAGGACAATCACTACAGACAGCAGCTCGAGCGCGCGGGCG GTGTGGGCAGTGGGGTGGTGGTGGGAGAGTACTCGATGGACTTCCGGAAG TGGCCGACGTCCTTCCCCTACAGCAACGAGACCCTCACGGGCCTCCAAGA CTTGCTTCTGGTTCAGCAGCATCTCTATAACGTCATTGGTGACAAACGTG AGAACGCAGCTGTTGGCGGATTTTTCTGGTCGTTCAAGTCCCTGGGCCGC GTCGATATCCAGACATTCGACCAGAGCGACCTGGCCGTCGACAACTCCTT CAATAATTTACACTCCCCGTGGAGCTACCTCTCCTTGCTCACCGACGGCG TGGCCAGCCCGAATCTGGCCAAGGCCACGCCACCATGTTAA back to topprotein sequence of NO23G00160.1 >NO23G00160.1-protein ID=NO23G00160.1-protein|Name=NO23G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp MRRLSSFFSALPSPSFRLFLLMVSILLSYSVVVASPFLLRGDATATAAVM EREKLWLGQQLQQQEQKEWPQDAPQYRGVNLGGWLVLESWMYPDWWHMTG VPLWKGEFQFNEILKDKALPLLRAHWDQWVTRDELVRLKDAGITYLRIPI GYWILGKEWLLPGDTYQPGGWPYLERALGWASELGLKCIIDLHGAPGAQN GNDNSGFSGGNTAINWTQPSNLARTTDVLVYLAQNLTKLNASKEMEGSIA GLCLLNEPWTTAVGGPVQLDTLKSWLQTTTDAVLATGWKGDVWFPDGFAL DWDGWRDFLTPPEYPRNIFADAHIYMMFDDAVADLDAAGQAQNFCREDNH YRQQLERAGGVGSGVVVGEYSMDFRKWPTSFPYSNETLTGLQDLLLVQQH LYNVIGDKRENAAVGGFFWSFKSLGRVDIQTFDQSDLAVDNSFNNLHSPW SYLSLLTDGVASPNLAKATPPC* back to topmRNA from alignment at chr23:75012..79097+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00160.1 ID=NO23G00160.1|Name=NO23G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4086bp|location=Sequence derived from alignment at chr23:75012..79097+ (Nannochloropsis oceanica) CTAATCTTTCCTCCCTGGCTTGAAGCAAGAGGAAGATTATTATGCATTCA
CCCAAGCGCTGTCGCAGCCTTACCGAGATGACAACAAGCTTGTGGCCATA
GAAGCTCTTGTGTCCTCAGTGCATCTACTTCGACTTGAACATTTCTTCAC
AGGCACGCGTGCTTTTGTCTGATGGGTAATGGTAATCGCGACACAAGTTG
AACCGACCGTATTTGAAACAAAAGGCACATGTCCCTCCACTCCACCCAGA
ACCCTCTGGTGCAGAGTCCCTGTACACGTAATTCATGCGCGTGCATGGTC
TGCAAGGTGACAGTCGCTATATTATCCAGTGATGCGGGTGCTGACAGGGG
CCATCGGGTGGCTACCCTTTGTCGAAATCCTCATGATGCTCCACACCACG
CCCCCTCACAAATAAGCTATTGCTATATATTCACTCGCTCACACTACACA
CACCATCCGCACATAGTCAACGATGCGGCGCCTCTCTTCCTTCTTCTCCG
CTCTCCCTTCTCCCTCCTTCCGCCTTTTCCTCCTCATGGTCAGCATTCTC
CTGTCCTATTCAGTCGTTGTCGCTTCCCCCTTCCTGTTGCGAGGTGACGC
CACGGCCACGGCCGCAGTCATGGAGCGGGAGAAGCTATGGTTAGGGCAGC
AGCTGCAACAGCAAGAACAGAAGGAATGGCCCCAAGATGCGCCGCAGTAC
CGTGGTGAGTACAAAGGGGATGAGGAAAGGAAGGGAGGGGAGGAGGGAAG
ACGGGACAGCTGTTGATATTTGATGTCTCGAAGCATCAGAAACTTCCTCA
TTAATCCCTTTTCCTCGTCTCCGCCCGCCGGCATAAATGTGACAGCCCTC
TTATTATCCCCCCCATCTCCCCCCTTTTGCCCTTCCTCTTCTCCCAGGCG
TCAATCTGGGCGGCTGGCTTGTGCTCGAGAGCTGGATGTATCCTGACTGG
TGGCATATGACGGGCGTGCCTCTGTGGAAAGGAGAGTTCCAATTCAACGA
AATTTTGAGTAAGTGTCCCTCCCTTCCTCCCTTTCTCTTTTTTTTCTTTT
GTGGGGGAGCACAACTCGAAAGGAAGGTTTCACTATAGGGTAGTCTGGGG
CGCCTTGTCATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAGAAGGATGGATGATAAACCAATCTGAGCT
CGTGAGTGAAATTTATGTATGCCTCTTGTTTCTTTTCATTCATTTTATGG
GGGCACTGCACCCAAAGGCATCGATCATCTCACCCTCCCTCCCTCTCTCC
CTCCCTCCCTCCCTCCCTCAGAGGACAAGGCTCTCCCCCTGCTCCGCGCG
CATTGGGATCAGTGGGTTACCCGCGACGAGCTCGTCCGCCTCAAGGACGC
TGGCATCACGGTATGCACCCTCCCTCCCTCCCTCCCTCCCTCCAGCTCCT
CCCTCCCTGGTACCTACGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCCATCCCAGTACCTCCGCATTCCCATCGGTTACTGGATCCTGGGCAAG
GAATGGCTTCTCCCAGGCGATACCTACCAACCCGGTGGATGGCCCTACCT
CGAGCGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGC
CTTTTGACTTTTCGAATTGCCATGAGCTTTCTACTCGAGTAAAGCCCTCC
TTCCTTCCCTCCCTCCCTCCCTCTCCCTTCCTCCTTTCTTCCTACCATTG
CATTTTCAGGTGCCGACGCAAGACGTCGGTAGGCCCAGAGCGCATCTTTT
AATCAGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT
CCAGCGCTCTCGGCTGGGCGAGTGAATTGGGTCTTAAATGCATCATAGAC
CTCCATGGAGCCCCCGGCGCACAGAATGGGAACGATAACAGCGGGTTTTC
AGGTAGGCAGTCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAG
GGAAGGAGGATGAGGAGGGAAGGAGGATGAGATTGTCTCGTGTACGGGCT
CGTGCATTCTGAGCTATTTCTATTCACCGCCCTCCTTCCCTACGCACCCA
CCCCCACAGGCGGCAATACGGCCATCAATTGGACACAGCCGTCCAACCTG
GCCAGAACAACGGACGTCCTCGTCTACCTCGCGCAGAACCTCACAAAGCT
GAACGCCTCCAAGGAGATGGAAGGCAAGCAAGCCCTCCCTCCCTCCCTCC
CTCTTTCCCTCCCGCCCTCCCTAGCGCCCTGCCGTCTTCTCCTCATGGCT
CCCCCTCCCTCCCTCCTTCCCTCCTTCTCTCCCACAGGCAGCATCGCTGG
TCTCTGTCTCCTCAACGAACCGTGGACTACGGCCGTCGGTGGCCCCGTCC
AACTCGACACCCTCAAATCCTGGTAAGCCCCTCCCCCCCTCCCTTCTTCC
CTCCCCCCCTTCCTCCTTCCCCCCCCCCTTCCTCCTTCCCTCTTCCCCTC
CCTCCCGTGGGACTGGAAGAGCTCTGTCCTCCTTTCCCTTTACTCATCCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTGCAGACCACCACCG
ATGCCGTTCTCGCCACAGGGTGGAAAGGCGACGTCTGGTTCCCTGACGGC
TTTGCCCTAGACTGTAAGGAGGGAGGGAGGGGAGGAGGGGAGAAAGGGAG
GGGAGGTGGATGGACACTCTTTTCTCAATATAATGCTCTCGTTTCACTCA
GGTACCTTTCCCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCC
TCCTCTTCTAGGGGACGGCTGGCGCGATTTTCTCACGCCTCCCGAATACC
CTCGGAATATATTCGCCGATGCCCACATCTACATGATGTTTGACGACGCC
GTGGCCGACCTTGATGGTATGCCCTCCCTCCCTCCCTCCTGCACGCCTTC
ACTCCCTGTCATCCCCTTGCTGTGTTTTGGTTGATATTATCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTATCCCTCCTCCGATCTACAA
CCAAAGGAAGTACGACAATCAGCAGCTTCCTCTTGTTCACTTCCCCGCTC
AATCCTCCCCCTCCCTCCCTCCCTCAGCGGCAGGCCAAGCACAGAATTTT
TGCCGGGAGGACAATCACTACAGACAGCAGCTCGAGCGCGCGGGCGGTGT
GGGCAGTGGGGTGGTGGTGGGAGAGTACTCGATGGGTAGGGAGGGAGGGA
GGGAGGGAGGAACAGGCCCTGTGTATTCGTCCACGCCATTGCGTTTCCCA
CGCACCGTATCTCCTTTTACCCCTCCCTCCCTCCCTCCCCCCCGCCCTCC
CCCCCGCCCTCCCAGACTTCCGGAAGTGGCCGACGTCCTTCCCCTACAGC
AACGAGACCCTCACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGCATGT
GAGCCGTGGGGGGGGAAGGAGGAAGAGAGGGTGGGAGGGTGGGGGGGTGG
AACGTATGTGTATATGTTCTTTGTGCTTGTGTCTGTGGGAACCTCCCTCC
TTCCCTCCGTCCTCCCCTCCCTCCCTTTTCTTCAAATTGTATAGTCAACT
GAAGGTTTCCGCATGCCACCACTTCTTAACTCCTCCCTCCCTTCCTCTCT
CTTTCCCGTCCTCCTTCCCTCCCTCAGCTCTATAACGTCATTGGTGACAA
ACGTGAGAACGCAGCTGTTGGCGGATTTTTCTGGTCGTTCAAGGTACGAA
TGACTTTGAGACCTCTTCCTCCCTCCCTCCTTCTCTCCCTCCCTCATGGT
CCACTTCAGACGCTCCATTTCCCAGCAAAGCAGCTCATCACGAGGAAAGC
ACCCCTCGAAATCACTGCCAACGGCCTTCTCTTCCCTCCCTTTCTCCCTC
CCTCCCACCCACCCTCGTTCCCTCCCTCCTCAGTCCCTGGGCCGCGTCGA
TATCCAGACATTCGACCAGAGCGACCTGGCCGTCGACAACTCCTTCAATA
ATTTACACTCCCCGTGGAGCTACCTCTCCTTGCTCACCGACGGCGTGGCC
AGCCCGAATCTGGCCAAGGCCACGCCACCATGTTAA back to topCoding sequence (CDS) from alignment at chr23:75012..79097+ >NO23G00160.1 ID=NO23G00160.1|Name=NO23G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr23:75012..79097+ (Nannochloropsis oceanica) ATGCGGCGCCTCTCTTCCTTCTTCTCCGCTCTCCCTTCTCCCTCCTTCCG CCTTTTCCTCCTCATGGTCAGCATTCTCCTGTCCTATTCAGTCGTTGTCG CTTCCCCCTTCCTGTTGCGAGGTGACGCCACGGCCACGGCCGCAGTCATG GAGCGGGAGAAGCTATGGTTAGGGCAGCAGCTGCAACAGCAAGAACAGAA GGAATGGCCCCAAGATGCGCCGCAGTACCGTGGCGTCAATCTGGGCGGCT GGCTTGTGCTCGAGAGCTGGATGTATCCTGACTGGTGGCATATGACGGGC GTGCCTCTGTGGAAAGGAGAGTTCCAATTCAACGAAATTTTGAAGGACAA GGCTCTCCCCCTGCTCCGCGCGCATTGGGATCAGTGGGTTACCCGCGACG AGCTCGTCCGCCTCAAGGACGCTGGCATCACGTACCTCCGCATTCCCATC GGTTACTGGATCCTGGGCAAGGAATGGCTTCTCCCAGGCGATACCTACCA ACCCGGTGGATGGCCCTACCTCGAGCGCGCTCTCGGCTGGGCGAGTGAAT TGGGTCTTAAATGCATCATAGACCTCCATGGAGCCCCCGGCGCACAGAAT GGGAACGATAACAGCGGGTTTTCAGGCGGCAATACGGCCATCAATTGGAC ACAGCCGTCCAACCTGGCCAGAACAACGGACGTCCTCGTCTACCTCGCGC AGAACCTCACAAAGCTGAACGCCTCCAAGGAGATGGAAGGCAGCATCGCT GGTCTCTGTCTCCTCAACGAACCGTGGACTACGGCCGTCGGTGGCCCCGT CCAACTCGACACCCTCAAATCCTGGCTGCAGACCACCACCGATGCCGTTC TCGCCACAGGGTGGAAAGGCGACGTCTGGTTCCCTGACGGCTTTGCCCTA GACTGGGACGGCTGGCGCGATTTTCTCACGCCTCCCGAATACCCTCGGAA TATATTCGCCGATGCCCACATCTACATGATGTTTGACGACGCCGTGGCCG ACCTTGATGCGGCAGGCCAAGCACAGAATTTTTGCCGGGAGGACAATCAC TACAGACAGCAGCTCGAGCGCGCGGGCGGTGTGGGCAGTGGGGTGGTGGT GGGAGAGTACTCGATGGACTTCCGGAAGTGGCCGACGTCCTTCCCCTACA GCAACGAGACCCTCACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGCAT CTCTATAACGTCATTGGTGACAAACGTGAGAACGCAGCTGTTGGCGGATT TTTCTGGTCGTTCAAGTCCCTGGGCCGCGTCGATATCCAGACATTCGACC AGAGCGACCTGGCCGTCGACAACTCCTTCAATAATTTACACTCCCCGTGG AGCTACCTCTCCTTGCTCACCGACGGCGTGGCCAGCCCGAATCTGGCCAA GGCCACGCCACCATGTTAA back to top
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