NO23G00160.1, NO23G00160.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00160.1
Unique NameNO23G00160.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1891
Alignment locationchr23:75012..79097 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:75012..79097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO23G00160.1 vs.
Match: EEH11064.1 (glucan 1,3-beta-glucosidase precursor [Histoplasma capsulatum G186AR])

HSP 1 Score: 175.6 bits (444), Expect = 3.500e-40
Identity = 124/386 (32.12%), Postives = 179/386 (46.37%), Query Frame = 0
Query:   77 RGVNLGGWLVLESWMYPDWWHMTGVPLWKGEFQFNEILKDKALPLLRAHWDQWVTRDELVRLKDAGITYLRIPIGYWILGKEWLLPGDTYQPGGWPYLERALGWASELGLKCIIDLHGAPGAQNGNDNSGFSGGNTAINWTQPSNLARTTDVLVYLAQNLTKLNASKEMEGSIAGLCLLNEPWTTAVGGPVQLDTLKSWLQTTTDAVLATGWKGDVWFPDGFALDWDGWRDFLTPPEYPRNIFADAHIYMMFDDAVADLDAAGQAQNFCREDNHYRQQLERAGGVGSGVVVGEYSMDFRKWPTSFPYSNETLTGLQDLLLVQQHLYNVIGDKRENAAVGGFFWSFKSL---GRVDIQTFDQSDLAVDNSFNNLHSPWSYLSLLTDG 460
            RGVNLGGWLVLE W+ P  +   G      E+  ++IL   A   L  HW+ W+T D+  ++  AG+T++RIPIGYW +     L G+ Y  G   YL++A+ WA +  LK  IDLHGAPG+QNG DNSG  G   +INW + + +A+T + L  LA+         +    +  + +LNEP+   V G V LD +K +       V        V   D F  D   W  F+ P E   N+F DAH Y +FD+A             C   ++ R+Q+ +         VGE       W  +     + L G        +   N    KR  A  G +F S K L    +V I+ F ++ L        L + W + +  T+G
Sbjct:   40 RGVNLGGWLVLEPWITPSVFEKAGDRA-VDEYTLSQILAGNARSRLSEHWNSWITADDFKQIAAAGLTHVRIPIGYWAVAP---LKGEPYVQGQVSYLDKAIRWARQSNLKVAIDLHGAPGSQNGFDNSGRRG---SINWPKGNTVAQTLNALRALAERYA------DQTDVVDSIEILNEPF---VPGGVPLDEVKQFYHKGYKVVRDINPNVGVAISDAFQ-DLRSWNGFMLPSENFHNVFLDAHHYQVFDNAFTSFSVDQHVNLAC---SYGREQVAK---TDKKTFVGE-------WSAAMTDCAKYLNGRDKGARFDKSFPN---GKRSGACGGRYFGSVKQLPDQQKVGIRRFIEAQL----DAYGLGAGWFFWTWKTEG 388          
The following BLAST results are available for this feature:
BLAST of NO23G00160.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EEH11064.13.500e-4032.12glucan 1,3-beta-glucosidase precursor [Histoplasma... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00160NO23G00160Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00160.1NO23G00160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00160.1.cds1NO23G00160.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds2NO23G00160.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds3NO23G00160.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds4NO23G00160.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds5NO23G00160.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds6NO23G00160.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds7NO23G00160.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds8NO23G00160.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds9NO23G00160.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds10NO23G00160.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds11NO23G00160.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds12NO23G00160.1.cds12Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00160.1.cds13NO23G00160.1.cds13Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00160.1 ID=NO23G00160.1|Name=NO23G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp
CTAATCTTTCCTCCCTGGCTTGAAGCAAGAGGAAGATTATTATGCATTCA
CCCAAGCGCTGTCGCAGCCTTACCGAGATGACAACAAGCTTGTGGCCATA
GAAGCTCTTGTGTCCTCAGTGCATCTACTTCGACTTGAACATTTCTTCAC
AGGCACGCGTGCTTTTGTCTGATGGGTAATGGTAATCGCGACACAAGTTG
AACCGACCGTATTTGAAACAAAAGGCACATGTCCCTCCACTCCACCCAGA
ACCCTCTGGTGCAGAGTCCCTGTACACGTAATTCATGCGCGTGCATGGTC
TGCAAGGTGACAGTCGCTATATTATCCAGTGATGCGGGTGCTGACAGGGG
CCATCGGGTGGCTACCCTTTGTCGAAATCCTCATGATGCTCCACACCACG
CCCCCTCACAAATAAGCTATTGCTATATATTCACTCGCTCACACTACACA
CACCATCCGCACATAGTCAACGATGCGGCGCCTCTCTTCCTTCTTCTCCG
CTCTCCCTTCTCCCTCCTTCCGCCTTTTCCTCCTCATGGTCAGCATTCTC
CTGTCCTATTCAGTCGTTGTCGCTTCCCCCTTCCTGTTGCGAGGTGACGC
CACGGCCACGGCCGCAGTCATGGAGCGGGAGAAGCTATGGTTAGGGCAGC
AGCTGCAACAGCAAGAACAGAAGGAATGGCCCCAAGATGCGCCGCAGTAC
CGTGGCGTCAATCTGGGCGGCTGGCTTGTGCTCGAGAGCTGGATGTATCC
TGACTGGTGGCATATGACGGGCGTGCCTCTGTGGAAAGGAGAGTTCCAAT
TCAACGAAATTTTGAAGGACAAGGCTCTCCCCCTGCTCCGCGCGCATTGG
GATCAGTGGGTTACCCGCGACGAGCTCGTCCGCCTCAAGGACGCTGGCAT
CACGTACCTCCGCATTCCCATCGGTTACTGGATCCTGGGCAAGGAATGGC
TTCTCCCAGGCGATACCTACCAACCCGGTGGATGGCCCTACCTCGAGCGC
GCTCTCGGCTGGGCGAGTGAATTGGGTCTTAAATGCATCATAGACCTCCA
TGGAGCCCCCGGCGCACAGAATGGGAACGATAACAGCGGGTTTTCAGGCG
GCAATACGGCCATCAATTGGACACAGCCGTCCAACCTGGCCAGAACAACG
GACGTCCTCGTCTACCTCGCGCAGAACCTCACAAAGCTGAACGCCTCCAA
GGAGATGGAAGGCAGCATCGCTGGTCTCTGTCTCCTCAACGAACCGTGGA
CTACGGCCGTCGGTGGCCCCGTCCAACTCGACACCCTCAAATCCTGGCTG
CAGACCACCACCGATGCCGTTCTCGCCACAGGGTGGAAAGGCGACGTCTG
GTTCCCTGACGGCTTTGCCCTAGACTGGGACGGCTGGCGCGATTTTCTCA
CGCCTCCCGAATACCCTCGGAATATATTCGCCGATGCCCACATCTACATG
ATGTTTGACGACGCCGTGGCCGACCTTGATGCGGCAGGCCAAGCACAGAA
TTTTTGCCGGGAGGACAATCACTACAGACAGCAGCTCGAGCGCGCGGGCG
GTGTGGGCAGTGGGGTGGTGGTGGGAGAGTACTCGATGGACTTCCGGAAG
TGGCCGACGTCCTTCCCCTACAGCAACGAGACCCTCACGGGCCTCCAAGA
CTTGCTTCTGGTTCAGCAGCATCTCTATAACGTCATTGGTGACAAACGTG
AGAACGCAGCTGTTGGCGGATTTTTCTGGTCGTTCAAGTCCCTGGGCCGC
GTCGATATCCAGACATTCGACCAGAGCGACCTGGCCGTCGACAACTCCTT
CAATAATTTACACTCCCCGTGGAGCTACCTCTCCTTGCTCACCGACGGCG
TGGCCAGCCCGAATCTGGCCAAGGCCACGCCACCATGTTAA
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protein sequence of NO23G00160.1

>NO23G00160.1-protein ID=NO23G00160.1-protein|Name=NO23G00160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MRRLSSFFSALPSPSFRLFLLMVSILLSYSVVVASPFLLRGDATATAAVM
EREKLWLGQQLQQQEQKEWPQDAPQYRGVNLGGWLVLESWMYPDWWHMTG
VPLWKGEFQFNEILKDKALPLLRAHWDQWVTRDELVRLKDAGITYLRIPI
GYWILGKEWLLPGDTYQPGGWPYLERALGWASELGLKCIIDLHGAPGAQN
GNDNSGFSGGNTAINWTQPSNLARTTDVLVYLAQNLTKLNASKEMEGSIA
GLCLLNEPWTTAVGGPVQLDTLKSWLQTTTDAVLATGWKGDVWFPDGFAL
DWDGWRDFLTPPEYPRNIFADAHIYMMFDDAVADLDAAGQAQNFCREDNH
YRQQLERAGGVGSGVVVGEYSMDFRKWPTSFPYSNETLTGLQDLLLVQQH
LYNVIGDKRENAAVGGFFWSFKSLGRVDIQTFDQSDLAVDNSFNNLHSPW
SYLSLLTDGVASPNLAKATPPC*
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mRNA from alignment at chr23:75012..79097+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00160.1 ID=NO23G00160.1|Name=NO23G00160.1|organism=Nannochloropsis oceanica|type=mRNA|length=4086bp|location=Sequence derived from alignment at chr23:75012..79097+ (Nannochloropsis oceanica)
CTAATCTTTCCTCCCTGGCTTGAAGCAAGAGGAAGATTATTATGCATTCA CCCAAGCGCTGTCGCAGCCTTACCGAGATGACAACAAGCTTGTGGCCATA GAAGCTCTTGTGTCCTCAGTGCATCTACTTCGACTTGAACATTTCTTCAC AGGCACGCGTGCTTTTGTCTGATGGGTAATGGTAATCGCGACACAAGTTG AACCGACCGTATTTGAAACAAAAGGCACATGTCCCTCCACTCCACCCAGA ACCCTCTGGTGCAGAGTCCCTGTACACGTAATTCATGCGCGTGCATGGTC TGCAAGGTGACAGTCGCTATATTATCCAGTGATGCGGGTGCTGACAGGGG CCATCGGGTGGCTACCCTTTGTCGAAATCCTCATGATGCTCCACACCACG CCCCCTCACAAATAAGCTATTGCTATATATTCACTCGCTCACACTACACA CACCATCCGCACATAGTCAACGATGCGGCGCCTCTCTTCCTTCTTCTCCG CTCTCCCTTCTCCCTCCTTCCGCCTTTTCCTCCTCATGGTCAGCATTCTC CTGTCCTATTCAGTCGTTGTCGCTTCCCCCTTCCTGTTGCGAGGTGACGC CACGGCCACGGCCGCAGTCATGGAGCGGGAGAAGCTATGGTTAGGGCAGC AGCTGCAACAGCAAGAACAGAAGGAATGGCCCCAAGATGCGCCGCAGTAC CGTGGTGAGTACAAAGGGGATGAGGAAAGGAAGGGAGGGGAGGAGGGAAG ACGGGACAGCTGTTGATATTTGATGTCTCGAAGCATCAGAAACTTCCTCA TTAATCCCTTTTCCTCGTCTCCGCCCGCCGGCATAAATGTGACAGCCCTC TTATTATCCCCCCCATCTCCCCCCTTTTGCCCTTCCTCTTCTCCCAGGCG TCAATCTGGGCGGCTGGCTTGTGCTCGAGAGCTGGATGTATCCTGACTGG TGGCATATGACGGGCGTGCCTCTGTGGAAAGGAGAGTTCCAATTCAACGA AATTTTGAGTAAGTGTCCCTCCCTTCCTCCCTTTCTCTTTTTTTTCTTTT GTGGGGGAGCACAACTCGAAAGGAAGGTTTCACTATAGGGTAGTCTGGGG CGCCTTGTCATGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGAGGGAGGGAGGGAAGAAGGATGGATGATAAACCAATCTGAGCT CGTGAGTGAAATTTATGTATGCCTCTTGTTTCTTTTCATTCATTTTATGG GGGCACTGCACCCAAAGGCATCGATCATCTCACCCTCCCTCCCTCTCTCC CTCCCTCCCTCCCTCCCTCAGAGGACAAGGCTCTCCCCCTGCTCCGCGCG CATTGGGATCAGTGGGTTACCCGCGACGAGCTCGTCCGCCTCAAGGACGC TGGCATCACGGTATGCACCCTCCCTCCCTCCCTCCCTCCCTCCAGCTCCT CCCTCCCTGGTACCTACGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCCATCCCAGTACCTCCGCATTCCCATCGGTTACTGGATCCTGGGCAAG GAATGGCTTCTCCCAGGCGATACCTACCAACCCGGTGGATGGCCCTACCT CGAGCGGTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGC CTTTTGACTTTTCGAATTGCCATGAGCTTTCTACTCGAGTAAAGCCCTCC TTCCTTCCCTCCCTCCCTCCCTCTCCCTTCCTCCTTTCTTCCTACCATTG CATTTTCAGGTGCCGACGCAAGACGTCGGTAGGCCCAGAGCGCATCTTTT AATCAGCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCT CCAGCGCTCTCGGCTGGGCGAGTGAATTGGGTCTTAAATGCATCATAGAC CTCCATGGAGCCCCCGGCGCACAGAATGGGAACGATAACAGCGGGTTTTC AGGTAGGCAGTCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAG GGAAGGAGGATGAGGAGGGAAGGAGGATGAGATTGTCTCGTGTACGGGCT CGTGCATTCTGAGCTATTTCTATTCACCGCCCTCCTTCCCTACGCACCCA CCCCCACAGGCGGCAATACGGCCATCAATTGGACACAGCCGTCCAACCTG GCCAGAACAACGGACGTCCTCGTCTACCTCGCGCAGAACCTCACAAAGCT GAACGCCTCCAAGGAGATGGAAGGCAAGCAAGCCCTCCCTCCCTCCCTCC CTCTTTCCCTCCCGCCCTCCCTAGCGCCCTGCCGTCTTCTCCTCATGGCT CCCCCTCCCTCCCTCCTTCCCTCCTTCTCTCCCACAGGCAGCATCGCTGG TCTCTGTCTCCTCAACGAACCGTGGACTACGGCCGTCGGTGGCCCCGTCC AACTCGACACCCTCAAATCCTGGTAAGCCCCTCCCCCCCTCCCTTCTTCC CTCCCCCCCTTCCTCCTTCCCCCCCCCCTTCCTCCTTCCCTCTTCCCCTC CCTCCCGTGGGACTGGAAGAGCTCTGTCCTCCTTTCCCTTTACTCATCCC CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTGCAGACCACCACCG ATGCCGTTCTCGCCACAGGGTGGAAAGGCGACGTCTGGTTCCCTGACGGC TTTGCCCTAGACTGTAAGGAGGGAGGGAGGGGAGGAGGGGAGAAAGGGAG GGGAGGTGGATGGACACTCTTTTCTCAATATAATGCTCTCGTTTCACTCA GGTACCTTTCCCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCC TCCTCTTCTAGGGGACGGCTGGCGCGATTTTCTCACGCCTCCCGAATACC CTCGGAATATATTCGCCGATGCCCACATCTACATGATGTTTGACGACGCC GTGGCCGACCTTGATGGTATGCCCTCCCTCCCTCCCTCCTGCACGCCTTC ACTCCCTGTCATCCCCTTGCTGTGTTTTGGTTGATATTATCCCTCCCTCC CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTATCCCTCCTCCGATCTACAA CCAAAGGAAGTACGACAATCAGCAGCTTCCTCTTGTTCACTTCCCCGCTC AATCCTCCCCCTCCCTCCCTCCCTCAGCGGCAGGCCAAGCACAGAATTTT TGCCGGGAGGACAATCACTACAGACAGCAGCTCGAGCGCGCGGGCGGTGT GGGCAGTGGGGTGGTGGTGGGAGAGTACTCGATGGGTAGGGAGGGAGGGA GGGAGGGAGGAACAGGCCCTGTGTATTCGTCCACGCCATTGCGTTTCCCA CGCACCGTATCTCCTTTTACCCCTCCCTCCCTCCCTCCCCCCCGCCCTCC CCCCCGCCCTCCCAGACTTCCGGAAGTGGCCGACGTCCTTCCCCTACAGC AACGAGACCCTCACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGCATGT GAGCCGTGGGGGGGGAAGGAGGAAGAGAGGGTGGGAGGGTGGGGGGGTGG AACGTATGTGTATATGTTCTTTGTGCTTGTGTCTGTGGGAACCTCCCTCC TTCCCTCCGTCCTCCCCTCCCTCCCTTTTCTTCAAATTGTATAGTCAACT GAAGGTTTCCGCATGCCACCACTTCTTAACTCCTCCCTCCCTTCCTCTCT CTTTCCCGTCCTCCTTCCCTCCCTCAGCTCTATAACGTCATTGGTGACAA ACGTGAGAACGCAGCTGTTGGCGGATTTTTCTGGTCGTTCAAGGTACGAA TGACTTTGAGACCTCTTCCTCCCTCCCTCCTTCTCTCCCTCCCTCATGGT CCACTTCAGACGCTCCATTTCCCAGCAAAGCAGCTCATCACGAGGAAAGC ACCCCTCGAAATCACTGCCAACGGCCTTCTCTTCCCTCCCTTTCTCCCTC CCTCCCACCCACCCTCGTTCCCTCCCTCCTCAGTCCCTGGGCCGCGTCGA TATCCAGACATTCGACCAGAGCGACCTGGCCGTCGACAACTCCTTCAATA ATTTACACTCCCCGTGGAGCTACCTCTCCTTGCTCACCGACGGCGTGGCC AGCCCGAATCTGGCCAAGGCCACGCCACCATGTTAA
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Coding sequence (CDS) from alignment at chr23:75012..79097+

>NO23G00160.1 ID=NO23G00160.1|Name=NO23G00160.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr23:75012..79097+ (Nannochloropsis oceanica)
ATGCGGCGCCTCTCTTCCTTCTTCTCCGCTCTCCCTTCTCCCTCCTTCCG
CCTTTTCCTCCTCATGGTCAGCATTCTCCTGTCCTATTCAGTCGTTGTCG
CTTCCCCCTTCCTGTTGCGAGGTGACGCCACGGCCACGGCCGCAGTCATG
GAGCGGGAGAAGCTATGGTTAGGGCAGCAGCTGCAACAGCAAGAACAGAA
GGAATGGCCCCAAGATGCGCCGCAGTACCGTGGCGTCAATCTGGGCGGCT
GGCTTGTGCTCGAGAGCTGGATGTATCCTGACTGGTGGCATATGACGGGC
GTGCCTCTGTGGAAAGGAGAGTTCCAATTCAACGAAATTTTGAAGGACAA
GGCTCTCCCCCTGCTCCGCGCGCATTGGGATCAGTGGGTTACCCGCGACG
AGCTCGTCCGCCTCAAGGACGCTGGCATCACGTACCTCCGCATTCCCATC
GGTTACTGGATCCTGGGCAAGGAATGGCTTCTCCCAGGCGATACCTACCA
ACCCGGTGGATGGCCCTACCTCGAGCGCGCTCTCGGCTGGGCGAGTGAAT
TGGGTCTTAAATGCATCATAGACCTCCATGGAGCCCCCGGCGCACAGAAT
GGGAACGATAACAGCGGGTTTTCAGGCGGCAATACGGCCATCAATTGGAC
ACAGCCGTCCAACCTGGCCAGAACAACGGACGTCCTCGTCTACCTCGCGC
AGAACCTCACAAAGCTGAACGCCTCCAAGGAGATGGAAGGCAGCATCGCT
GGTCTCTGTCTCCTCAACGAACCGTGGACTACGGCCGTCGGTGGCCCCGT
CCAACTCGACACCCTCAAATCCTGGCTGCAGACCACCACCGATGCCGTTC
TCGCCACAGGGTGGAAAGGCGACGTCTGGTTCCCTGACGGCTTTGCCCTA
GACTGGGACGGCTGGCGCGATTTTCTCACGCCTCCCGAATACCCTCGGAA
TATATTCGCCGATGCCCACATCTACATGATGTTTGACGACGCCGTGGCCG
ACCTTGATGCGGCAGGCCAAGCACAGAATTTTTGCCGGGAGGACAATCAC
TACAGACAGCAGCTCGAGCGCGCGGGCGGTGTGGGCAGTGGGGTGGTGGT
GGGAGAGTACTCGATGGACTTCCGGAAGTGGCCGACGTCCTTCCCCTACA
GCAACGAGACCCTCACGGGCCTCCAAGACTTGCTTCTGGTTCAGCAGCAT
CTCTATAACGTCATTGGTGACAAACGTGAGAACGCAGCTGTTGGCGGATT
TTTCTGGTCGTTCAAGTCCCTGGGCCGCGTCGATATCCAGACATTCGACC
AGAGCGACCTGGCCGTCGACAACTCCTTCAATAATTTACACTCCCCGTGG
AGCTACCTCTCCTTGCTCACCGACGGCGTGGCCAGCCCGAATCTGGCCAA
GGCCACGCCACCATGTTAA
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Synonyms
Publications