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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr23 | genome | chr23:25205..29331 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO23G00060.1 vs.
Match: XP_008616160.1 (cytidylate kinase [Saprolegnia diclina VS20]; EQC30307.1 cytidylate kinase [Saprolegnia diclina VS20]) HSP 1 Score: 290.0 bits (741), Expect = 1.400e-74 Identity = 153/338 (45.27%), Postives = 215/338 (63.61%), Query Frame = 0
Query: 163 RPKVIFVLGGPGAGKGTQCERLVSKYGFVHLSAGELLRKARESGTEEGKLIDEYLVQGKIVPVRISLSLLRAEMEDARDRAGSTHFLIDGFPRNFDNVQGWEELMQEVADVEAVLAIDCPEDVLIERLLKRGETSGRTDDNVETIRKRFHTYNEATRPVIAYYQGKPTIAVHQIPGQLDRQEVFAKIEAAVDPLIEREIVSLTQTLLNAIAEGDWATYARLCSHDMTCFEPEAQGHLIQGLKFHKVYFDN----GNALGDVHVSTISQPSVRVLGKTAVCVYVRLVQSVNPVTKLTSSASHEETRVWTLVEGGQEGGREGGKEGLTGVGWKCVHFHRS 497
R KV+FVLGGPGAGKGTQC ++V++YGFVHLSAG+LLR+ R SG+E G +ID + +G IVPV+++L L+R M +G FLIDGFPRNFDN+ GW + M +V DV VL DCPED + RLL+RG+TSGRTDDN+E IRKRF TY E+T P+I ++ + V I + VF + + A++P++ + +V TQ LLNA+ + D+ATY LC +++ EP++ GH+++G+KFH+ YF N G + V + + P V++LG TA+ + ++QS + S + ETRVW + TG WK VHFHRS
Sbjct: 6 RHKVLFVLGGPGAGKGTQCAKIVAQYGFVHLSAGDLLREERASGSENGDMIDRMIREGAIVPVKVTLDLIRKAMV----ASGRDLFLIDGFPRNFDNLTGWNDEMVDV-DVAGVLFYDCPEDEMERRLLERGKTSGRTDDNMEAIRKRFATYTESTMPIINHFAAQN--KVFHILATSTPEAVFEETKKAIEPIVSQHLVDTTQRLLNAVFQNDYATYRALCDDNISAIEPQSMGHVVEGMKFHEFYFKNQGRGGLGVASVCQANVVDPHVKLLGDTAIVSFANVIQSAS-----EPSVVYMETRVW-------------HRSATTG-AWKNVHFHRS 317
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO23G00060.1 ID=NO23G00060.1|Name=NO23G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp CCGCTTACTTGCTCGATAGTCTCTAATCATGTGTGGGGTGGAGTGTGTCC AGTCAATTGTGTCTGTGGATAGAGGACAGTTACCGTTTGTGGTAGGCAGA GAGTCCGCGAAGGCCCAGCAGGAGGAGGCAGCCCTGCAACCATGCAGCAG TTGCCAATGTCGGGCTAGCAGCATACCTCTCCGACTCCTCCCTCACATCT CCTCTCCGCACACTCAGGACCTCAGCAACGAAGTCAGCTAGTCTAGCAAG GCCAGCCATGCGTCCACCGCCTGCCGTCTTTGGTTTCCAACGCGGCGGCG GCGCCCTGGCCCTCATCCTCTGTTTCCTCCATCGCCGCGGCGGGATCTTG TCCTTCGTACAGGCCCTTCGTCCTCCCTTCCACCGTCCCTTACGCTTATC CCATGCCGCAGCCGCCTTTTCTTCTGCTGCCGTCTCCTCCTCCCCTCCCT CCTTCTTCTCCCTTTCAGCCCTTAGAAGAAGAGGAGGGAAAGGAGGGCGG GAGGGAGGAAGCACATCTGCACGACGAGCATTTGCCTCCTCTTCCTCCTC CTCCTCATCGTCTTCTGCCTCCTCCTCCTCGTCTTCTGTCTCCTCCGCTT CTTCTCCCTCCTCCTCCTCCTCTGCGTCGTCGAAAGGCATCATCCTGGCG GGTGCGGCAACTGTGCTGGCCGCCTCCACGAGCAGTGACATGCGGCAGCA AGGGGAGGTCTCGGCATCGGCCGCCGGGTCCTACAAAGGCAGTCGTCCCA AGGTCATCTTCGTCTTGGGCGGCCCGGGCGCCGGCAAAGGCACGCAATGC GAGCGTCTGGTGTCAAAGTACGGGTTTGTCCACCTCTCGGCGGGTGAGCT GCTGCGGAAGGCGAGGGAGAGCGGGACCGAGGAGGGAAAGCTCATTGACG AGTACCTGGTGCAAGGCAAAATCGTGCCTGTCCGCATCTCCCTCTCCCTC CTCCGGGCCGAGATGGAGGATGCCAGGGATCGCGCCGGCTCAACCCACTT CCTCATTGACGGCTTCCCGCGGAATTTCGACAACGTCCAGGGCTGGGAGG AGCTCATGCAGGAGGTGGCGGACGTGGAGGCCGTGCTGGCCATCGACTGC CCCGAGGATGTCTTGATTGAGCGCCTCCTGAAGCGGGGCGAGACGAGTGG CCGCACGGACGACAACGTGGAGACCATCCGGAAGCGCTTTCACACCTACA ACGAAGCTACGCGGCCCGTCATCGCATACTATCAAGGCAAACCAACCATC GCGGTGCACCAAATCCCCGGCCAGCTCGACCGGCAGGAAGTGTTTGCCAA AATAGAGGCGGCCGTCGACCCGCTCATCGAGCGGGAGATCGTCTCGCTCA CTCAAACCCTCCTGAACGCCATTGCCGAGGGCGATTGGGCCACCTACGCC CGCCTCTGCTCCCACGACATGACTTGCTTCGAGCCCGAGGCTCAGGGGCA CCTCATCCAAGGCCTGAAATTTCACAAGGTCTACTTCGATAACGGCAACG CGCTGGGTGACGTCCACGTTTCCACCATCTCCCAGCCTAGCGTGCGAGTA CTGGGCAAGACCGCCGTGTGCGTCTACGTGCGCCTGGTGCAGTCGGTTAA CCCTGTCACCAAATTGACTTCTTCGGCCTCTCACGAAGAGACCCGCGTGT GGACCTTGGTGGAAGGAGGGCAGGAGGGAGGGAGGGAGGGAGGGAAGGAG GGCTTGACAGGGGTAGGCTGGAAGTGTGTGCATTTCCATCGGTCACCCGC GAATGCCTCGGTACCGTCCTCGTGAAGGCAGGAGGGAGGGAGGGATGGAG GGAGGAAGGGGTGGAAGAGGGCAATCATGACGGTATCACAAAAGTAAGG back to topprotein sequence of NO23G00060.1 >NO23G00060.1-protein ID=NO23G00060.1-protein|Name=NO23G00060.1|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp MRPPPAVFGFQRGGGALALILCFLHRRGGILSFVQALRPPFHRPLRLSHA AAAFSSAAVSSSPPSFFSLSALRRRGGKGGREGGSTSARRAFASSSSSSS SSSASSSSSSVSSASSPSSSSSASSKGIILAGAATVLAASTSSDMRQQGE VSASAAGSYKGSRPKVIFVLGGPGAGKGTQCERLVSKYGFVHLSAGELLR KARESGTEEGKLIDEYLVQGKIVPVRISLSLLRAEMEDARDRAGSTHFLI DGFPRNFDNVQGWEELMQEVADVEAVLAIDCPEDVLIERLLKRGETSGRT DDNVETIRKRFHTYNEATRPVIAYYQGKPTIAVHQIPGQLDRQEVFAKIE AAVDPLIEREIVSLTQTLLNAIAEGDWATYARLCSHDMTCFEPEAQGHLI QGLKFHKVYFDNGNALGDVHVSTISQPSVRVLGKTAVCVYVRLVQSVNPV TKLTSSASHEETRVWTLVEGGQEGGREGGKEGLTGVGWKCVHFHRSPANA SVPSS* back to topmRNA from alignment at chr23:25205..29331- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO23G00060.1 ID=NO23G00060.1|Name=NO23G00060.1|organism=Nannochloropsis oceanica|type=mRNA|length=4127bp|location=Sequence derived from alignment at chr23:25205..29331- (Nannochloropsis oceanica) CCGCTTACTTGCTCGATAGTCTCTAATCATGTGTGGGGTGGAGTGTGTCC
AGTCAATTGTGTCTGTGGATAGAGGACAGTTACCGTTTGTGGTAGGCAGA
GAGTCCGCGAAGGCCCAGCAGGAGGAGGCAGCCCTGCAACCATGCAGCAG
TTGCCAATGTCGGGCTAGCAGCATACCTCTCCGACTCCTCCCTCACATCT
CCTCTCCGCACACTCAGGACCTCAGCAACGAAGTCAGCTAGTCTAGCAAG
GCCAGCCATGCGTCCACCGCCTGCCGTCTTTGGTTTCCAACGCGGTTAGT
CTCTTTCTCCTTCCCAGCCTCCCCCGCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCGTCCCATCTCACGCAAACACAAACACATAGGCGGCGGCGCCC
TGGCCCTCATCCTCTGTTTCCTCCATCGCCGCGGCGGGATCTTGTCCTTC
GTACAGGTACGATCGCAGTGGGGATCAGGAGAAAGGGGAGAGGAGCTAGG
AGTATAGAGGGAGGAGAGAGGCTGGGCCTGGCTTGCTGGGTGAATATCCA
CCGCGATGAATAACAGCGTGAAAGAAGAGAACAACATGATAAAAAGGAAG
GACAGGGAGGAGGGGAAGACCCCGGAATAATCCGCGAACTCAAACGCCCC
GTTTGACATCCATACATCCCTCCCTTGATCCCTTCCTCCCTACCTACCTA
CCTACCTACCTACCTACCCCCCTGTTTCAACAGGCCCTTCGTCCTCCCTT
CCACCGTCCCTTACGCTTATCCCATGCCGCAGCCGCCTTTTCTTCTGCTG
CCGTCTCCTCCTCCCCTCCCTCCTTCTTCTCCCTTTCAGCCCTTAGAAGA
AGAGGAGGGAAAGGAGGGCGGGAGGGAGGAAGCACATCTGCACGACGAGC
ATTTGCCTCCTCTTCCTCCTCCTCCTCATCGTCTTCTGCCTCCTCCTCCT
CGTCTTCTGTCTCCTCCGCTTCTTCTCCCTCCTCCTCCTCCTCTGCGTCG
TCGAAAGGCATCATCCTGGCGGGTGCGGCAACTGTGCTGGCCGCCTCCAC
GAGCAGTGACATGCGGCAGCAAGGGTGAGGAGGATGGAGGGAGGGAGGGA
GAAAGAGATTGACGTATAGATAGATGCATTGACATACGACAGGAAGGGTG
TGAGGAGGATGGAGGGAGAGAGGGATGGAGAAAGAGAGAGACGTATGGAT
AGACGCAGTGACATACGACCGCAAGGGTGAGGAGGAGGGAGGAAAGGAGG
GAGTGAGAAAGTCATGAGTAGATGGACGATGTTCATGTTGTTCCCTCATC
TGTCCACTAAAACCACAGGGAGGTCTCGGCATCGGCCGCCGGGTCCTACA
AAGGCAGTCGTCCCAAGGTGCGCTCAGCCCCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTCCA
CCACACATTCTATTTTGTCGTGGGCAGGTCCGGGTGTCGGCCACGGCAGC
TGGCAGTGCGAGCGGGGGGTGCCCTTCACATGCAGGAGCCTCTTTCGCCT
CACCTCCCTCCATCCCTCCCTCCCTCCTCCTCACCCTTGAGGTCATCTTC
GTCTTGGGCGGCCCGGGCGCCGGCAAAGGCACGCAATGCGAGCGTCTGGT
GTCAAAGTACGGGTTTGTCCACCTCTCGGCGGGTGAGCTGCTGCGGAAGG
CGAGGGAGAGCGGGACCGAGGAGGGAAAGCTCATTGACGAGTACCTGGTG
CAAGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGGGGGAGGGCTTGACGGGAGACTCCCTGACTTTTC
ATGATATCGGTGACTGCCTGCTGCAAGATACACGTTCTGTATGCCCACCC
GCCCTCCCTCCGTCGATCCCTCCCTTCCCCCCTCCCTCCCTCCCTCTTTC
CCTCCCTCCCTCCCTCAGGCAAAATCGTGCCTGTCCGCATCTCCCTCTCC
CTCCTCCGGGCCGAGATGGAGGATGCCAGGGATCGCGCCGGCTCAACCCA
CTTCCTCATTGACGGCTTCCCGCGGAATTTCGACAACGTCCAGGTGCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCCTTTCCCTCCCTCCC
CTCTCTCCCTCCTGCGTGTTGAGCCTCTCACCCTCCCTCCCTCCTTCCTC
CCTGCCCTCTCTCTCTCCCTCCCTCCCTCCCCTTCCCCCCCTTCCTCCCT
CTCTCTTCTACCAAGGGCTGGGAGGAGCTCATGCAGGAGGTGGCGGACGT
GGAGGCCGTGCTGGCCATCGACTGCCCCGAGGATGTCTTGATTGGTGAGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATATGGAGGGAGGGAGGGTG
TGGTCGGTGGAAAAAGGGTCGATGGGGGACATATGTATGTGTATACTGAT
GGTTTTGGGGTACATACGTACATAAATACATATCTATATATATATATATG
TATGTCGATTGTAAGATGCACATATGTTAGTAGGTTCAGGATACACGTAT
TTGAGTGTGAGGGGGCGTGACAGGTGTGAGAATGATCCGTCGGGCTTGAC
ACGCGGGAGACGATCAGGAGGACGTAAGAATAGGAAGGGAGGGAAAGAGG
GGAGGGAGGAAAGAGGGGGGAGGATAGCGGAACAGGTGTTGATTAAGTCA
AGTGCTCCTGCATAGCAACTACTATGACTTACCCTCCCTCCCTCCCCCTT
CACTTCAGAGCGCCTCCTGAAGCGGGGCGAGACGAGTGGCCGCACGGACG
ACAACGTGGAGACCATCCGGAAGCGCTTTCACACCTACAACGAAGCTGTC
CGTCCTTCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCT
CCCTCCTACCGAGGTCTCCCCCTTACCCTCCCTTCCTCCCTCCCTCCCTC
CTTCCGTCCCTCCCTCCCTCCCCCCCCCAGACGCGGCCCGTCATCGCATA
CTATCAAGGCAAACCAACCATCGCGGTGCACCAAATCCCCGGCCAGCTCG
ACCGGCAGGAAGTGTTTGCCAAAATAGAGGCGGCCGTCGACCCGCTCATC
GAGCGGGAGGTACGTGCTGGCTCGCCGTCCTTCCTCTCTCTTTATCCCGC
CCGGCCTGCTCATTTGAGACAAAAGAGATGAGAGGGGCTTTGGACTCCGT
CGTCGATAGGGAGGATAGTGATGTCTGCCCTCCTTCCCTCTCTCTTTCCC
TCCTTCCTTTCATCTTCACGTGACCTCCCTCCCTCCCTCCCTCCCTCCCT
CAGATCGTCTCGCTCACTCAAACCCTCCTGAACGCCATTGCCGAGGGCGA
TTGGGCCACCTACGCCCGCCTCTGCTCCCACGACATGACTTGCTTCGAGC
CCGAGGCTCAGGGGCACCTCATCCAAGGCCTGGTGCGTGTCGGTCTCTCC
TTTCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCTGCCCTTGTCTAATC
TCTCTTTCTTTCTTTTTCTCTCTCTCTCCTTCTTTCCCGCTCATTTTCCC
CTCCCTCCCTCCCTCCCTCCTCCCCTCCCTCCCGCTCTCCCTCGAAGAAA
TTTCACAAGGTCTACTTCGATAACGGCAACGCGCTGGGTGACGTCCACGT
TTCCACCATCTCCCAGCCTAGGTAGGGATGGGAAAGGAGGAAGGGAGGGC
TTAGTTTGACGGCACTCGGAGGGATCAGGGTTGTAACGGCCTGTTACTCC
TTGACGCACCCCCTAACCCACTCCCATCATAACTCCTCCTTCCCCCCCTC
CCTCCCTCTCATCCAAAGCGTGCGAGTACTGGGCAAGACCGCCGTGTGCG
TCTACGTGCGCCTGGTGCAGTCGGTTAACCCTGTCACCAAATTGACTTCT
TCGGCCTCTCACGAAGAGACCCGCGTGTGGACCTTGGTGGAAGGAGGGCA
GGAGGGAGGGAGGGAGGGAGGGAAGGAGGGCTTGACAGGGGTAGGCTGGA
AGTGTGTGCATTTCCATCGGTCACCCGCGAATGCCTCGGTACCGTCCTCG
TGAAGGCAGGAGGGAGGGAGGGATGGAGGGAGGAAGGGGTGGAAGAGGGC
AATCATGACGGTATCACAAAAGTAAGG back to topCoding sequence (CDS) from alignment at chr23:25205..29331- >NO23G00060.1 ID=NO23G00060.1|Name=NO23G00060.1|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at chr23:25205..29331- (Nannochloropsis oceanica) ATGCGTCCACCGCCTGCCGTCTTTGGTTTCCAACGCGGCGGCGGCGCCCT GGCCCTCATCCTCTGTTTCCTCCATCGCCGCGGCGGGATCTTGTCCTTCG TACAGGCCCTTCGTCCTCCCTTCCACCGTCCCTTACGCTTATCCCATGCC GCAGCCGCCTTTTCTTCTGCTGCCGTCTCCTCCTCCCCTCCCTCCTTCTT CTCCCTTTCAGCCCTTAGAAGAAGAGGAGGGAAAGGAGGGCGGGAGGGAG GAAGCACATCTGCACGACGAGCATTTGCCTCCTCTTCCTCCTCCTCCTCA TCGTCTTCTGCCTCCTCCTCCTCGTCTTCTGTCTCCTCCGCTTCTTCTCC CTCCTCCTCCTCCTCTGCGTCGTCGAAAGGCATCATCCTGGCGGGTGCGG CAACTGTGCTGGCCGCCTCCACGAGCAGTGACATGCGGCAGCAAGGGGAG GTCTCGGCATCGGCCGCCGGGTCCTACAAAGGCAGTCGTCCCAAGGTCAT CTTCGTCTTGGGCGGCCCGGGCGCCGGCAAAGGCACGCAATGCGAGCGTC TGGTGTCAAAGTACGGGTTTGTCCACCTCTCGGCGGGTGAGCTGCTGCGG AAGGCGAGGGAGAGCGGGACCGAGGAGGGAAAGCTCATTGACGAGTACCT GGTGCAAGGCAAAATCGTGCCTGTCCGCATCTCCCTCTCCCTCCTCCGGG CCGAGATGGAGGATGCCAGGGATCGCGCCGGCTCAACCCACTTCCTCATT GACGGCTTCCCGCGGAATTTCGACAACGTCCAGGGCTGGGAGGAGCTCAT GCAGGAGGTGGCGGACGTGGAGGCCGTGCTGGCCATCGACTGCCCCGAGG ATGTCTTGATTGAGCGCCTCCTGAAGCGGGGCGAGACGAGTGGCCGCACG GACGACAACGTGGAGACCATCCGGAAGCGCTTTCACACCTACAACGAAGC TACGCGGCCCGTCATCGCATACTATCAAGGCAAACCAACCATCGCGGTGC ACCAAATCCCCGGCCAGCTCGACCGGCAGGAAGTGTTTGCCAAAATAGAG GCGGCCGTCGACCCGCTCATCGAGCGGGAGATCGTCTCGCTCACTCAAAC CCTCCTGAACGCCATTGCCGAGGGCGATTGGGCCACCTACGCCCGCCTCT GCTCCCACGACATGACTTGCTTCGAGCCCGAGGCTCAGGGGCACCTCATC CAAGGCCTGAAATTTCACAAGGTCTACTTCGATAACGGCAACGCGCTGGG TGACGTCCACGTTTCCACCATCTCCCAGCCTAGCGTGCGAGTACTGGGCA AGACCGCCGTGTGCGTCTACGTGCGCCTGGTGCAGTCGGTTAACCCTGTC ACCAAATTGACTTCTTCGGCCTCTCACGAAGAGACCCGCGTGTGGACCTT GGTGGAAGGAGGGCAGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGCTTGA CAGGGGTAGGCTGGAAGTGTGTGCATTTCCATCGGTCACCCGCGAATGCC TCGGTACCGTCCTCGTGA back to top
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